TCONS_00046936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046936
Unique NameTCONS_00046936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length982

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046936 ID=TCONS_00046936|Name=TCONS_00046936|organism=Clytia hemisphaerica|type=transcript|length=982bp
attttttcaggattttaaCCGCTGTTCCGCCATGAGAGGCAgtgtttctt
ttttcaaaaaactcggCTTGCGGTGCTCATTTCATACGAACCCATCATGT
TTATCATTCAAACAACGTTGAATGGATGTTAAAACAACACTCATGTAGCA
CTGAGaaaattaaatatgtcaatgatCGATTCAATGCTAGATAAAGAAGT
CTTAAAACATAAATCTGATTATATTTGTAACAaagattgataaaaaaaat
aattcatgcgGGCGTGTCAAAGTATAATACTTTTTTCGTCAAAGCAATTT
CATCATTCACATTGGAGACTTGGTCCTGCATAGACGGATTCATAGCTGAG
GATCAAgaagatttcaaaatgaaactgtttttcttggctGCTCTCTGTTT
TGTTGCATTTCAAGCAACTTGTGGAAGTTACCTGGATTTAGATGCATTTG
AAGATGAAACATACAATGATATGCTTGAAGCAAGAAGACAAAGAGATTAT
TTAAATGaaaTGGCAAAACGAGATTATTTCAGGTCAAAATACGATTACTT
TCAACGTAAACGTTCTTGTACAAACGATTCCTCGTGTAAAAGCATCCTTG
GTGTTCATCCAAATGCGTGTACCGAGTCTACATCTAAAATTGGTATGCTT
CATCCGTGGGTTCTCGCTAAATGCAAGCTAGCATGTGGCAAATGCTAATA
TTTTATATCCTTGTATTTATCATTTTGGGTCATTGAAAATTCGAAATGTA
AATATTTCAGCCCTTCATTTCGGgaatatttctaattttttgaatacaaa
atatttaaccttttttactcaaaataatttatatctATATTTTCTACATT
TTCCGTTCCACATATTCCTAATTCCACATATTTTTAAAGCTGCTTAATAC
AAAATCCTAAGCACAAGAAAGATCGTTgtattgtaaaattttaattctcC
ATTTCACTCAAattattgccaccgcagggagc
Run BLAST on NCBI

protein sequence of TCONS_00046936-protein

>TCONS_00046936-protein ID=TCONS_00046936-protein|Name=TCONS_00046936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MKLFFLAALCFVAFQATCGSYLDLDAFEDETYNDMLEARRQRDYLNEMAK
RDYFRSKYDYFQRKRSCTNDSSCKSILGVHPNACTESTSKIGMLHPWVLA
KCKLACGKC
Run BLAST on NCBI

transcript from alignment at scaffold_118:300889..303238-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046936 ID=TCONS_00046936|Name=TCONS_00046936|organism=Clytia hemisphaerica|type=transcript|length=2350bp|location=Sequence derived from alignment at scaffold_118:300889..303238- (Clytia hemisphaerica)
ATTTTTTCAGGATTTTAACCGCTGTTCCGCCATGAGAGGCAGTGTTTCTT
TTTTCAAAAAACTCGGCTTGCGGTGCTCATTTCATACGAACCCATCATGT
TTATCATTCAAACAACGTTGAATGGATGTTAAAACAACACTCATGTAGCA
CTGAGAAAATTAAATATGTCAATGATCGATTCAATGCTAGATAAAGAAGT
CTTAAAACATAAATCTGATTATATTTGTAACAAAGATTGATAAAAAAAAT
AATTCATGCGGGCGTGTCAAAGTATAATACTTTTTTCGTCAAAGCAATTT
CATCATTCACATTGGAGACTTGGTCCTGCATAGACGGATTCATAGCTGAG
GATCAAGAAGATTTCAAAATGAAACTGTTTTTCTTGGCTGCTCTCTGTTT
TGTTGCATTTCAAGGTAAAGCGTCGTCTTTTTTGTTCATTTTGACATCCC
TTCTCACAAACCCACTGGGACCTCTTCCCACTGGAAAAATTTGCCAAAAT
ATCGTCCCAGTGGAAAATTATACTCTAATTTTTGTCCCGCTTAAAATAAT
CAGAAATGCAAATCCTCATTGCAAACTATCGTGCTGTTTTTCCATTCCCA
TCAAATTTTCGGGCTCAAAAATAATGAAAGTCAAATACCCAGCCAAAAAA
ACATGGGGGTCGATATTCCCTGGGTATTCTGACTATTTGTATCGAGTTTT
GTCCGTTATTTTTACCCCTACTATCTGAAAAAAATCCTACCTGGTATGTG
AGAAGGGGGTGTATTTTGGTCCTGATACCGTGTTGATTTGAAGGTAGAGC
GTTCAGTCACAAAAAATGCAAGGCTTCAATCCATGGCCTAGTTTTAACTG
CACCCTCTATCCTTTAATAGCGAATAGACATGCTTTTGGCTATTCGCCTC
TGACTGCAATTCCAATTTTTCCCGTCATGTAAGGTTAAGTAGTTTCAAGA
TTAATTTTAACTTTCATCTTAGCAACTTGTGGAAGTTACCTGGATTTAGA
TGCATTTGAAGATGAAACATACAATGATATGCTTGAAGCAAGAAGACAAA
GAGATTATTTAAATGGTATGGAAATCATATTTATTTTTTTAATCAAAAAT
AACATACCCTTGCAGCGAACCCAGTATTCTTTCAAGCCGATATGTACATT
GCATTATTACCATTCAAGCTGTCTGGTTCTCGTTAACACATCCAAAAAAA
CTGATCAATCAGAAACCCAAAATCTTTTCATGTTCTGATTAATAAGAGCT
TGCGAAACGTAAACTATACGCAAATAGACGTTTGTAGTGGATTAATTTTG
TACAGAAAGGTAGTGGGTTCAATCCCTGGCTGGTTCATACCAATGACACC
AAAATGGTACCTGATATATATCTTTTTAATGTTCAGCTGTTAAATGAAGG
ACTGAGGGCAAGAGGACAATCTTAGGAGAAAGAGAAAAGTTAAGGTCTCT
ACTTCATGGTAAGATAGCTATCGAAAGAGCGATCATTTAAGTTTCCTCCG
AATGTGGTCACAAGATTGACTTCATGACGCTCTCTCTTCATAAAATCTTT
ATAAAACATTTTTATTTTATAGAAATGGCAAAACGAGATTATTTCAGGTC
AAAATACGGTAAGTTTCTTTTTAATACTCTTTAAATTCTCTCAAAGAGTT
AAAAATCCGGAAAACCTGGTTGAGCGAACCCTTTAGAAAAGAGGCTCGGG
TCGAAAGATCTATTGAAGGATTGTGAATTATGAATTTCAATTAAACATCA
AAGAAAAGACAATAAAACCTGTGATTCTCACCTACTCTTATTTGCTATTT
CATCATTTAAATGCCATATTTAGCTCCTTCACGCTTAATATAATTAGCTC
TGCTAGAAAGCACTGACTTGGTCACTTTGCCAATTTTGATTTTGATTTTG
TCTTCTTATAGATTACTTTCAACGTAAACGTTCTTGTACAAACGATTCCT
CGTGTAAAAGCATCCTTGGTGTTCATCCAAATGCGTGTACCGAGTCTACA
TCTAAAATTGGTATGCTTCATCCGTGGGTTCTCGCTAAATGCAAGCTAGC
ATGTGGCAAATGCTAATATTTTATATCCTTGTATTTATCATTTTGGGTCA
TTGAAAATTCGAAATGTAAATATTTCAGCCCTTCATTTCGGGAATATTTC
TAATTTTTTGAATACAAAATATTTAACCTTTTTTACTCAAAATAATTTAT
ATCTATATTTTCTACATTTTCCGTTCCACATATTCCTAATTCCACATATT
TTTAAAGCTGCTTAATACAAAATCCTAAGCACAAGAAAGATCGTTGTATT
GTAAAATTTTAATTCTCCATTTCACTCAAATTATTGCCACCGCAGGGAGC

Coding sequence (CDS) from alignment at scaffold_118:300889..303238-

>TCONS_00046936 ID=TCONS_00046936|Name=TCONS_00046936|organism=Clytia hemisphaerica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_118:300889..303238- (Clytia hemisphaerica)
ATTACTTTCAACGTAAACGTTCTTGTACAAACGATTCCTCGTGTAAAAGC
ATCCTTGGTGTTCATCCAAATGCGTGTACCGAGTCTACATCTAAAATTGG
TATGCTTCATCCGTGGGTTCTCGCTAAATGCAAGCTAGCATGTGGCAAAT
GCTAAAAATGGCAAAACGAGATTATTTCAGGTCAAAATACGCAACTTGTG
GAAGTTACCTGGATTTAGATGCATTTGAAGATGAAACATACAATGATATG
CTTGAAGCAAGAAGACAAAGAGATTATTTAAATGATGAAACTGTTTTTCT
TGGCTGCTCTCTGTTTTGTTGCATTTCAAGATTACTTTCAACGTAAACGT
TCTTGTACAAACGATTCCTCGTGTAAAAGCATCCTTGGTGTTCATCCAAA
TGCGTGTACCGAGTCTACATCTAAAATTGGTATGCTTCATCCGTGGGTTC
TCGCTAAATGCAAGCTAGCATGTGGCAAATGCTAAAAATGGCAAAACGAG
ATTATTTCAGGTCAAAATACGCAACTTGTGGAAGTTACCTGGATTTAGAT
GCATTTGAAGATGAAACATACAATGATATGCTTGAAGCAAGAAGACAAAG
AGATTATTTAAATGATGAAACTGTTTTTCTTGGCTGCTCTCTGTTTTGTT
GCATTTCAAGATTACTTTCAACGTAAACGTTCTTGTACAAACGATTCCTC
GTGTAAAAGCATCCTTGGTGTTCATCCAAATGCGTGTACCGAGTCTACAT
CTAAAATTGGTATGCTTCATCCGTGGGTTCTCGCTAAATGCAAGCTAGCA
TGTGGCAAATGCTAAAAATGGCAAAACGAGATTATTTCAGGTCAAAATAC
GCAACTTGTGGAAGTTACCTGGATTTAGATGCATTTGAAGATGAAACATA
CAATGATATGCTTGAAGCAAGAAGACAAAGAGATTATTTAAATGATGAAA
CTGTTTTTCTTGGCTGCTCTCTGTTTTGTTGCATTTCAAGATTACTTTCA
ACGTAAACGTTCTTGTACAAACGATTCCTCGTGTAAAAGCATCCTTGGTG
TTCATCCAAATGCGTGTACCGAGTCTACATCTAAAATTGGTATGCTTCAT
CCGTGGGTTCTCGCTAAATGCAAGCTAGCATGTGGCAAATGCTAAAAATG
GCAAAACGAGATTATTTCAGGTCAAAATACGCAACTTGTGGAAGTTACCT
GGATTTAGATGCATTTGAAGATGAAACATACAATGATATGCTTGAAGCAA
GAAGACAAAGAGATTATTTAAATGATGAAACTGTTTTTCTTGGCTGCTCT
CTGTTTTGTTGCATTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029941XLOC_029941Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046936-exon-scaffold_118-1575043694:302825..303238TCONS_00046936-exon-scaffold_118-1575043694:302825..303238Clytia hemisphaericaexon
TCONS_00046936-exon-scaffold_118-1575043694:302174..302266TCONS_00046936-exon-scaffold_118-1575043694:302174..302266Clytia hemisphaericaexon
TCONS_00046936-exon-scaffold_118-1575043694:301631..301666TCONS_00046936-exon-scaffold_118-1575043694:301631..301666Clytia hemisphaericaexon
TCONS_00046936-exon-scaffold_118-1575043694:300889..301327TCONS_00046936-exon-scaffold_118-1575043694:300889..301327Clytia hemisphaericaexon
TCONS_00046936-exon-scaffold_118-1510915933:302825..303238TCONS_00046936-exon-scaffold_118-1510915933:302825..303238Clytia hemisphaericaexon
TCONS_00046936-exon-scaffold_118-1510915933:302174..302266TCONS_00046936-exon-scaffold_118-1510915933:302174..302266Clytia hemisphaericaexon
TCONS_00046936-exon-scaffold_118-1510915933:301631..301666TCONS_00046936-exon-scaffold_118-1510915933:301631..301666Clytia hemisphaericaexon
TCONS_00046936-exon-scaffold_118-1510915933:300889..301327TCONS_00046936-exon-scaffold_118-1510915933:300889..301327Clytia hemisphaericaexon
TCONS_00046936-exon-scaffold_118-1491911889:302825..303238TCONS_00046936-exon-scaffold_118-1491911889:302825..303238Clytia hemisphaericaexon
TCONS_00046936-exon-scaffold_118-1491911889:302174..302266TCONS_00046936-exon-scaffold_118-1491911889:302174..302266Clytia hemisphaericaexon
TCONS_00046936-exon-scaffold_118-1491911889:301631..301666TCONS_00046936-exon-scaffold_118-1491911889:301631..301666Clytia hemisphaericaexon
TCONS_00046936-exon-scaffold_118-1491911889:300889..301327TCONS_00046936-exon-scaffold_118-1491911889:300889..301327Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046936-proteinTCONS_00046936-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:300889..303238 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0458962	0.358048	0.051966	0	0	0	0	0	0	0	0	0	0	0.0633992	0	0.0279678	70.6653	103.259	0.0975773	0.153161	272.063	247.917	231.649	244.14	94.6112	135.585	65.3871	45.3354	0.152824	0.311406
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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