TCONS_00046927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046927
Unique NameTCONS_00046927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046927 ID=TCONS_00046927|Name=TCONS_00046927|organism=Clytia hemisphaerica|type=transcript|length=1349bp
CGGAAGGCTCATAAAATGAGTAGTTGAAAGTTTTTGCTTGTAAAGCCTCG
ATAATGGAAATGGCTCGTTTGCCACCAAGAACGAAAATGGAGAACACGAA
CCTGCTATACTATGAAGTACCGATCGGTTGTGTCGGCTTCTTATTGAATT
TTGTCGAAATCATTTACATCGGGTGTATAAAGAAAATCAGACGAAATCCT
GATACGATCTTGTTGAGCTTATGCCTGGCTGATTTACTAACGTGTACTTC
AACGACACTTTCGACAGCTCTAGTAAATGATTTCTCGACTCACATTAAAA
GCAGTACGGAGATTTTGGCAGCTTTATCAGGTTTGAATGCCGTTTTACTG
TCCATCGATAGATTTTTTGCTATCATCTACCCATTGAAACATCGTAGTGT
GCTCACCAAGAGCCTTATAATCAAACTTATCATACTTGTATGGGTATTGG
GCATTTCAGTCGGTGCAATTGGTTTCAAATATACAGAATATCGTTTTCTT
TTCGTCCCCGTAGTGGTCGCCTTGGCAAGTGTTGTGTTCGTCTTTGTCTA
CACTTCGATTGCTATTACCGTCAAAAGACGCAAACTTACCTCCTCAAGGT
CTTCCAACAACAAAACCGTCATCATCTGTCTCATAACAACCGTTCTTTTC
GTCGCTACTTCAATACCAATTTGTCTCGAATCAATGAGAAATTCACTTTT
CTTTTACATCAACGGTATTTCGAACTCATTGGTTTACTTTGTGTATAACG
TGGTGGCGCGTCTATGTTGTGCTCGTACCAGGAACAACTCTTCGCGAAGA
TCGACGACGAGCAGTCGAATCATTCATTCGACTAAAAATTCTGTCATTGA
ACGAGGTATATCAAATGGTAACTTTGAGTTGCCCGAAATACCTAAAACAT
CCGAAGAATAATGAAACTATTCTCTAATTTACACCAAATATGATATTGTT
TTTCAggcattttgactttttaaagatCATATTTTTGACGGTTGTATTTG
AAAAACCCAAAAGGCACTTCGAATGTTATATACTATAGTCCCtgtaaggg
ttgtaaaaaccagaaaattaaatttcagtcacactaagggtcggaaaaat
aggaaaatttctactttttgctCCTTGAATAGTCAAAATTTGGTTAAAtt
agtcccagtaagggtcgtaaaaatcgctaaattttaccaattttttctcc
tttttagtcccgctaagggtccgagggtcgaaattcgggtggcacatacc
cgtcagctcgtAACCCTAGTGCCCGCAGAATTTTATGTGAATCTTTCGAC
TATTTCCAATACtgttaggttccaaataaaataattttttgaaaatttt
Run BLAST on NCBI

protein sequence of TCONS_00046927-protein

>TCONS_00046927-protein ID=TCONS_00046927-protein|Name=TCONS_00046927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MEMARLPPRTKMENTNLLYYEVPIGCVGFLLNFVEIIYIGCIKKIRRNPD
TILLSLCLADLLTCTSTTLSTALVNDFSTHIKSSTEILAALSGLNAVLLS
IDRFFAIIYPLKHRSVLTKSLIIKLIILVWVLGISVGAIGFKYTEYRFLF
VPVVVALASVVFVFVYTSIAITVKRRKLTSSRSSNNKTVIICLITTVLFV
ATSIPICLESMRNSLFFYINGISNSLVYFVYNVVARLCCARTRNNSSRRS
TTSSRIIHSTKNSVIERGISNGNFELPEIPKTSEE
Run BLAST on NCBI

transcript from alignment at scaffold_118:215761..217594-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046927 ID=TCONS_00046927|Name=TCONS_00046927|organism=Clytia hemisphaerica|type=transcript|length=1834bp|location=Sequence derived from alignment at scaffold_118:215761..217594- (Clytia hemisphaerica)
CGGAAGGCTCATAAAATGAGTAGTTGAAAGTTTTTGCTTGTAAAGCCTCG
ATAATGGAAGTTAGTTTTCATTACCAATGATTTCGTTTCGTGGACTCGAA
AAAAATCTTGTCTTAAACAACGTGAAGAGCCAGATCTCCTGTTGTGTTCA
TTCTTATCCAAAAAACTGTTTTCAAGTTGAACTTCAAACTGAGACAAGAC
TTTTTCGAATTTACATTGTTGGCTTTTTGAAAACAATATTTTGTAAATTA
ATTTTCAGTTTTTTCTTTAGAATATCTTTGGCCTTTTTAATACTATTCAA
TGACGATATCTAGGAGTCAAGTCACCAGCTATTTTAGCCTGAAACTAATT
AAGTTCAAAATTGTAAGATCTTTCTCAAAAGTAAAGAAAACATATGGTAA
TTAATAATGAAAACTTTAATAATTCATCTAAGAAAAAATTAATTTTAGCT
TCCGTTTGTNGAAAACATATGGTAATTAATAATGAAAACTTTAATAATTC
ATCTAAGAAAAAATTAATTTTAGCTTCCGTTTGTTTTTTATCAGATGGCT
CGTTTGCCACCAAGAACGAAAATGGAGAACACGAACCTGCTATACTATGA
AGTACCGATCGGTTGTGTCGGCTTCTTATTGAATTTTGTCGAAATCATTT
ACATCGGGTGTATAAAGAAAATCAGACGAAATCCTGATACGATCTTGTTG
AGCTTATGCCTGGCTGATTTACTAACGTGTACTTCAACGACACTTTCGAC
AGCTCTAGTAAATGATTTCTCGACTCACATTAAAAGCAGTACGGAGATTT
TGGCAGCTTTATCAGGTTTGAATGCCGTTTTACTGTCCATCGATAGATTT
TTTGCTATCATCTACCCATTGAAACATCGTAGTGTGCTCACCAAGAGCCT
TATAATCAAACTTATCATACTTGTATGGGTATTGGGCATTTCAGTCGGTG
CAATTGGTTTCAAATATACAGAATATCGTTTTCTTTTCGTCCCCGTAGTG
GTCGCCTTGGCAAGTGTTGTGTTCGTCTTTGTCTACACTTCGATTGCTAT
TACCGTCAAAAGACGCAAACTTACCTCCTCAAGGTCTTCCAACAACAAAA
CCGTCATCATCTGTCTCATAACAACCGTTCTTTTCGTCGCTACTTCAATA
CCAATTTGTCTCGAATCAATGAGAAATTCACTTTTCTTTTACATCAACGG
TATTTCGAACTCATTGGTTTACTTTGTGTATAACGTGGTGGCGCGTCTAT
GTTGTGCTCGTACCAGGAACAACTCTTCGCGAAGATCGACGACGAGCAGT
CGAATCATTCATTCGACTAAAAATTCTGTCATTGAACGAGGTATATCAAA
TGGTAACTTTGAGTTGCCCGAAATACCTAAAACATCCGAAGAATAATGAA
ACTATTCTCTAATTTACACCAAATATGATATTGTTTTTCAGGCATTTTGA
CTTTTTAAAGATCATATTTTTGACGGTTGTATTTGAAAAACCCAAAAGGC
ACTTCGAATGTTATATACTATAGTCCCTGTAAGGGTTGTAAAAACCAGAA
AATTAAATTTCAGTCACACTAAGGGTCGGAAAAATAGGAAAATTTCTACT
TTTTGCTCCTTGAATAGTCAAAATTTGGTTAAATTAGTCCCAGTAAGGGT
CGTAAAAATCGCTAAATTTTACCAATTTTTTCTCCTTTTTAGTCCCGCTA
AGGGTCCGAGGGTCGAAATTCGGGTGGCACATACCCGTCAGCTCGTAACC
CTAGTGCCCGCAGAATTTTATGTGAATCTTTCGACTATTTCCAATACTGT
TAGGTTCCAAATAAAATAATTTTTTGAAAATTTT

Coding sequence (CDS) from alignment at scaffold_118:215761..217594-

>TCONS_00046927 ID=TCONS_00046927|Name=TCONS_00046927|organism=Clytia hemisphaerica|type=CDS|length=1716bp|location=Sequence derived from alignment at scaffold_118:215761..217594- (Clytia hemisphaerica)
ATGGCTCGTTTGCCACCAAGAACGAAAATGGAGAACACGAACCTGCTATA
CTATGAAGTACCGATCGGTTGTGTCGGCTTCTTATTGAATTTTGTCGAAA
TCATTTACATCGGGTGTATAAAGAAAATCAGACGAAATCCTGATACGATC
TTGTTGAGCTTATGCCTGGCTGATTTACTAACGTGTACTTCAACGACACT
TTCGACAGCTCTAGTAAATGATTTCTCGACTCACATTAAAAGCAGTACGG
AGATTTTGGCAGCTTTATCAGGTTTGAATGCCGTTTTACTGTCCATCGAT
AGATTTTTTGCTATCATCTACCCATTGAAACATCGTAGTGTGCTCACCAA
GAGCCTTATAATCAAACTTATCATACTTGTATGGGTATTGGGCATTTCAG
TCGGTGCAATTGGTTTCAAATATACAGAATATCGTTTTCTTTTCGTCCCC
GTAGTGGTCGCCTTGGCAAGTGTTGTGTTCGTCTTTGTCTACACTTCGAT
TGCTATTACCGTCAAAAGACGCAAACTTACCTCCTCAAGGTCTTCCAACA
ACAAAACCGTCATCATCTGTCTCATAACAACCGTTCTTTTCGTCGCTACT
TCAATACCAATTTGTCTCGAATCAATGAGAAATTCACTTTTCTTTTACAT
CAACGGTATTTCGAACTCATTGGTTTACTTTGTGTATAACGTGGTGGCGC
GTCTATGTTGTGCTCGTACCAGGAACAACTCTTCGCGAAGATCGACGACG
AGCAGTCGAATCATTCATTCGACTAAAAATTCTGTCATTGAACGAGGTAT
ATCAAATGGTAACTTTGAGTTGCCCGAAATACCTAAAACATCCGAAGAAT
AAATGGAAATGGCTCGTTTGCCACCAAGAACGAAAATGGAGAACACGAAC
CTGCTATACTATGAAGTACCGATCGGTTGTGTCGGCTTCTTATTGAATTT
TGTCGAAATCATTTACATCGGGTGTATAAAGAAAATCAGACGAAATCCTG
ATACGATCTTGTTGAGCTTATGCCTGGCTGATTTACTAACGTGTACTTCA
ACGACACTTTCGACAGCTCTAGTAAATGATTTCTCGACTCACATTAAAAG
CAGTACGGAGATTTTGGCAGCTTTATCAGGTTTGAATGCCGTTTTACTGT
CCATCGATAGATTTTTTGCTATCATCTACCCATTGAAACATCGTAGTGTG
CTCACCAAGAGCCTTATAATCAAACTTATCATACTTGTATGGGTATTGGG
CATTTCAGTCGGTGCAATTGGTTTCAAATATACAGAATATCGTTTTCTTT
TCGTCCCCGTAGTGGTCGCCTTGGCAAGTGTTGTGTTCGTCTTTGTCTAC
ACTTCGATTGCTATTACCGTCAAAAGACGCAAACTTACCTCCTCAAGGTC
TTCCAACAACAAAACCGTCATCATCTGTCTCATAACAACCGTTCTTTTCG
TCGCTACTTCAATACCAATTTGTCTCGAATCAATGAGAAATTCACTTTTC
TTTTACATCAACGGTATTTCGAACTCATTGGTTTACTTTGTGTATAACGT
GGTGGCGCGTCTATGTTGTGCTCGTACCAGGAACAACTCTTCGCGAAGAT
CGACGACGAGCAGTCGAATCATTCATTCGACTAAAAATTCTGTCATTGAA
CGAGGTATATCAAATGGTAACTTTGAGTTGCCCGAAATACCTAAAACATC
CGAAGAATAAATGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029937XLOC_029937Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046927-proteinTCONS_00046927-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046927-exon-scaffold_118-1575043694:217536..217594TCONS_00046927-exon-scaffold_118-1575043694:217536..217594Clytia hemisphaericaexon
TCONS_00046927-exon-scaffold_118-1575043694:215761..217050TCONS_00046927-exon-scaffold_118-1575043694:215761..217050Clytia hemisphaericaexon
TCONS_00046927-exon-scaffold_118-1510915933:217536..217594TCONS_00046927-exon-scaffold_118-1510915933:217536..217594Clytia hemisphaericaexon
TCONS_00046927-exon-scaffold_118-1510915933:215761..217050TCONS_00046927-exon-scaffold_118-1510915933:215761..217050Clytia hemisphaericaexon
TCONS_00046927-exon-scaffold_118-1491911889:217536..217594TCONS_00046927-exon-scaffold_118-1491911889:217536..217594Clytia hemisphaericaexon
TCONS_00046927-exon-scaffold_118-1491911889:215761..217050TCONS_00046927-exon-scaffold_118-1491911889:215761..217050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:215761..217594 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.155604	0.182086	0.21142	0.103421	0.545586	0.298474	1.24033	0.861524	1.31125	1.07197	3.34213	1.05704	0.662319	0.70932	0.159043	0.0758566	0.677506	0.502857	0.595478	0.865452	2.40715	2.42163	1.14184	1.0381	4.71124	4.47305	0.0853457	0.136625	0.62175	0.633465
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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