TCONS_00046925 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046925
Unique Name	TCONS_00046925
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	5141

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_118:179333..191496-

transcript sequence

>TCONS_00046925 ID=TCONS_00046925|Name=TCONS_00046925|organism=Clytia hemisphaerica|type=transcript|length=5141bp
GAAACGTcaacataattattcaatagaaAAAGATCTGGTTACCTTTTGGT
GGTTAACCAGAATGATGAAATTGAAGCCGAAAAAATGTCCCAGCCCAGNA
TAGAAAAAGATCTGGTTACCTTTTGGTGGTTAACCAGAATGATGAAATTG
AACCCGAAAAAATGTCCCAGCccagagaagaaaaaaaagcatAGTCAACA
ATGGTTATTGGATTTCCCACATGTTTCAACTGCTCTGATTGGTTAACTAC
TCATGATATTGAATGGTGATTGGCTGCTTTAAACAATGAATCAAAACCGA
AACAAAGCAAGACTTCATATCACTTGAAACTACCGGATATGGGTGAAGCc
agtgaaatatcaaatcttacTTCACCAagaacagaacatcaaattgaaaa
gaaaaatcaaagacaACGCACACACGACTTGTTGTTGTGGAAAAGAGCCT
CTTATCTTACAGTGCGTGGCTTGGAGTATTGAGGAGgGCGATCTCTCTCA
TTAGCCAGCCAGCTGGAAGATGAAGCTGTCAGCCTCATCAGCTGCAGGCC
TTCTGCTGATTTTCGTTTATCTTACTGCAAGTGTACGAGCCCAAGAAGAA
GACGACCtatTTGGGAACGACAACAAAAAGCCTGGCAAATGTCCAGTAGT
TGAAGACATCCCTGGAGAATGTCCAGATATTGACGATCAAGAATGTTTGA
CTGATGATATGTGTTCTGGTGATTTGAAATGTTGCTCTGACGGATGTATG
TTAAGATGTACGGTTGCTGAGGCTTCCATCATCGTCAAGAAGGGTGAAAT
TGGCGAACCAGGAGATGCTGGAGAAGATGGAGCACAAGGTGAAAGCGCTG
TTGATGGAAAAGAAGGACCTGCTGGAGCCAAGGGAAAACCTGGTAAAGAC
GGTTCCAAGGGAAAGAAAGGAAAACGGGGACGACCAGGACCTCCAGGACC
AGCAGCCGGCGGTGTCGTACCAGGGCCAGTTGTTGAGCGACCTCTTGGCA
GCAAACCACAGGCACCATGGTTGAGTGGCGCATTGAACAGTGAATTTGGA
GAAGATATCATGCCACCCATCCCAACAAGCAAAGATGCACCAACTGGCGC
AAAAGGCGAAGAAGGTCCCGAAGGATATCTCGGACCTTACggtGAACGTG
GCAACCCAGGGCTTCCAGGTGTGATTGGTGCTGGAGGAGATGCGGGACCA
AAAGGTTACCCAGGACCATCAGGTGCGACTGGACGTTCCGGATTACCCGG
ACGCCGTGGTCCTTCCGGTGATACTGGAGAAGCAGGATTCCCGGGACCAA
TGGGAGAAGCTGGATCTCCAGGAATCCGTGGTCCATCAGGCTACAAAGGG
AACAAAGGAGATCGTGGAGCAGCTGGAGAAGTCGGTGTCGCTGGAGAAGC
AGGTGAAAAAGGAGAAGCAGGAGAAGCAGGAGCTGATGGTGACCAAGGAA
GAACTGGTAGCCCCGGTGAGCGTGGCCAACGCGGTCCACAAGGACCTGCA
GGTGGAGCAGGAGCTAAAGGAGATCTTGGTGCCGCTGGTGCCCCTGGACC
TGTCGGTGTTGCTGGATTCCCTGGAGACCAAGGAGATGCTGGAGCTGACG
GAGTAAAAGGAGAAGGGGGAGACCCTGGACCAAGAGGTGTTCAAGGACCT
CAAGGAAACATGGGAGACTCTGGTGCACCTGGTTCTCAAGGAAAGAAAGG
AGAACGAGGTCGCAATGGACGCAATGGTAACACTGGTCTCAAAGGTAATA
CTGGACGTCGAGGAAGCTTTGGTATTCCTGGACCTGTTGGACAAACTGGA
TATCCAGGAGCCACTGGACCAGAAGGATTGATCGGTGCTACTGGAGCTAC
TGGACCAAGAGGAGACACAGGAGCTCAAGGACCTGGAGGATTCAAAGGAC
AAACAGGTGATCAAGGAAGTCAAGGTCAATCTGGCGCCATGGGTGTTCAA
GGGTCTGTTGGCAAAAAAGGTGCTGCTGGTCCACCAGGAGCAGCTGGCGC
ACCAGGAAAAACAGGGTTTATGGGCAAAATAGGAGAACGAGGATCAGTCG
GTGCATTAGGAGCCAAAGGAGGTCTTGGTGACCGTGGAGCTCGCGGAGAA
CAAGGTAGTAGTGGAAATGCTGGAGGACCAGGAATTGATGGAGCTGATGG
AGCTAAAGGAGAAGTTGGTGCCCCAGGTGTTCAAGGTGAACAAGGACCAT
CAGGAAACCCTGGCAAGCGAGGTGCAGGTGGTAAAGACGGACGGAATGGT
GTAGAGGGTGCTCGTGGTGCACCTGGAAGTCCTGGAGCCATTGGTCTTCA
AGGAGCCAAAGGAGCAGCAGGTTATCCAGGCAACGGTGGTGAAGCTGGTG
TTAGAGGTGCAAAAGGAGCTCGAggAGATATCGGAGAGAAAGGGGGAAAT
GGACCTGTTGGAGTGAGTGGTTTACCAGGAGGCTCAGGAAGCCGTGGCGC
AACCGGTGCACCAGGACAAATGGGTGCACCTGGACCAGGCGGACCCATCG
GAAATGCTGGACAACCAGGAAAAACAGGACAGACAGGTGCCAATGGATTA
CAAGGAGACCGAGGAACAAGTGGAGCTGCTGGACAACGTGGTCAAACAGG
ACCAGGTGGAAAACCTGGAATGACTGGCACACGTGGAAACGATGGAGAAA
CTGGGGAGACTGGACCTGAAGGAAAACAGGGTGCTAAAGGACCAAGTGGA
CCACAAGGACCCCCTGGTATCATCGGAGCCGTTGGTCGACCAGGAATGCA
CGGAGCCCGTGGATCACCCGGCGGTAAAGGAGCGCCAGGACCACGAGGAA
AGAATGGAAAACGAGGAGAAGATGGATTACCAGGAGAAGTTGGTGCTGAT
GGACCTGTAGGACCCACTGGTACCGCTGGTGCACCTGGAGCTAAAGGAGT
GGCCGGACGTAAAGGGTCCAGTGGTCTGACCGGTAAACCAGGACAGCAAG
GGTTGGCTGGACCCGCTGGTGAACAAGGACCACGTGGTGATGGAGGACGA
CTTGGAGAGAAAGGCGGTGCAGGAAGCAAAGGTGCAAGAGGAGTCCGTGG
TGACCGTGGAGCAACTGGAAAAGCTGGTGCTGATGGACCCGATGGTATTA
CTGGTCCCGAAGGTATTAACGGAGCGTTTGGAACGAAAGGAAGCAAAGGA
CCCAACGGTCAATCCGGTGGTATGGGTTTCCGTGGTGAAGATGGACCGGT
CGGAGCACAAGGAGAACGAGGTATCATTGGAAACCTTGGACCACGTGGAA
AGATTGGACGCGATGGATTGAAAGGAAATCAAGGTCTTGAAGGACGTCAA
GGAGCCGATGGACCACGTGGTGAAGATGGAAGACCTGGCAAAGATGGTCT
CAATGGAGAACCAGGAAAAGATGGTGCCACTGGCGAACAAGGAGAACCAG
GCAAAGCAGGACAACCCGGATTCCGCGGAATGTGGGGAGGACTTGGATTA
CCAGGGCGTCCAGGACCACAAGGAGAAGCTGGTGAATCAGGAGACGCCGG
TCTTGATGGTATTGATGGAGCCAAGGGAAAGAAAGGATCTACTGGTCTCC
AAGGACGTGTTGGTGAACGCGGTGCTACCGGAAATGCTGGCCTCGCTGGC
GTGAATGGCGTTGACGGTAAACCAGGAACCAACGGTGAAGACGGTGGCAA
AGGAGAAACAGGGGAGACTGGCCTCGCCGGACAACCCGGATCACAAGGAG
ATGTCGGCGCAAGAGGACCAATGGGAACCAAAGGAAAAACTGGACCGAAA
GGAGAAGATGGTGTCGACGGAGTTTCTGGAAACCCCGGGAGAAACGGTGA
TGCTGGTGCCAATGGAGATCGCGGAGAGAAAGGAAACCGTGGTGCACGAG
GAGACAAAGGAGCAAAAGGATGGAAAGGTTACCGTGGATACCCCGGTTAC
CCAGGATACCGTGGACGATCAGGAGCACGTGGTGAACCAGGTGTCAATGG
TGAAAAAGGAGAAATTGGAATGGCTGGATCAGCAGGTGCTCCTGGACCTC
GTGGTCGTGAAGGAGAACCTGGAGAAATTGGAGACGCCGGCCTCGATGGT
GCCAAAGGAATAAAGGGTCCTCTAGGTCTTCAAGGAGAAAACGGATTTTC
CGGACCCGCAGGACCACCTGGACCAAGAGGATCACCAGGACCTGCCGGAG
GCTTATTCGATGCAGGCTCTCTTCAGAATTATTACCCATACCAACAACAA
GCTCCACAAGAGAAAGGACCAGCTCATTATGGTTATTACTACAATAATTA
CTACAAATCAAAGCAACGCCGACGTCAAGGTGCAATGGACCTTATGGACG
ATTTGGAGATCCGTGTTGAGGCTGAAGGAAAACCCGACGGCAGCAAACAA
TTCCCTGGTAAAACATGCCGTGATATCCAAATGTGCTTCCCTGAAAGCAA
AACCGgtTATTACTTCATCGATCCTAATGGTGGTGGCAGCGACGACGCCA
TTGTTGCTCATTGCAACTTCGAGAAAGCAGGCGAAGTAGAGACATGCGTC
AATGCTGTACAGACGTCTTACGAATTAAAAGACTGGGTACCAACTGGTCA
AGATGCTTACAAATGGTTCATGTGGGACATCCAAACCACTTTCGATGATA
AGATTCGCTACGAACAACTGAATACAAACGCACAAATCAAATCATTGAGG
ATTGGTCACACTCAAGCTCGTCAAAACATCACCTATTTGTGTAAAAACTC
GTTCGCACACAAAGACGCTGACGGCAAATCCAACTCTTTCGTCAAAGTTT
TATCCAACAATGGAGACGAAGTTCACGTCAATGGACGCCGTCATAAACGA
CTTGACGTATTGAGGGATAACTGTCACGTCAAAGACGGAAAATCAAGAGA
AACTGTTTTCGAATATTCGTCACGACGTACAAACGACTTACCTATTCGAG
ACGTTGCCGTTTTTGACGTTGCCGACTCCGACGAATCTTTTGGATTGCAA
ATCGGTCCCGTATGTTTCTCATGAATGTGagatataaaaaattattaaaa
tttatgCACATAcattaaagttttatttttcatataaaattcttttagtt
ttgtaaaatattttgaaaaatcaacattttaacGCGCGCGCATTGGGACA
AAAAGGAACTGGCTGAAAATATGGGGGgtattaaaaaatga

Run BLAST on NCBI

transcript from alignment at scaffold_118:179333..191496-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046925 ID=TCONS_00046925|Name=TCONS_00046925|organism=Clytia hemisphaerica|type=transcript|length=12164bp|location=Sequence derived from alignment at scaffold_118:179333..191496- (Clytia hemisphaerica)
GAAACGTCAACATAATTATTCAATAGAAAAAGATCTGGTTACCTTTTGGT
GGTTAACCAGAATGATGAAATTGAAGCCGAAAAAATGTCCCAGCCCAGNA
TAGAAAAAGATCTGGTTACCTTTTGGTGGTTAACCAGAATGATGAAATTG
AACCCGAAAAAATGTCCCAGCCCAGAGAAGAAAAAAAAGCATAGTCAACA
ATGGTTATTGGATTTCCCACATGTTTCAACTGCTCTGATTGGTTAACTAC
TCATGATATTGAATGGTGATTGGCTGCTTTAAACAATGAATCAAAACCGA
AACAAAGCAAGACTTCATATCACTTGAAACTACCGGATATGGGTGAAGCC
AGTGAAATATCAAATCTTACTTCACCAAGAACAGAACATCAAATTGAAAA
GAAAAATCAAAGACAACGCACACACGACTTGTTGTTGTGGAAAAGAGCCT
CTTATCTTACAGTGCGTGGCTTGGAGTATTGAGGAGGTATAACTTCATTT
TTTTTATGATTGAATCATTTCTTTGAAGCTCTTGGTACAGTTCTCCATCG
AAAGATGTATCTGAGTTGAGGTCGCTCCTTGCAATCGCTCTTTTTTATCC
ATTAAGTACAATCATTCTGTAATCTCAAATTTTAAAACATTTTTTTGATT
TCGAAAGGGTGAACACGCCCCAACTAATAATTTTTTCTTTCGACTTTTTC
ATTCGATTAGGGTAAAAAAACAGGGTGGTATTTAGGGACATAGCGACGCA
TATGCTATAAACTCTAGTGATTTCATACAATTTTCTTTTTCCAGGGCGAT
CTCTCTCATTAGCCAGCCAGCTGGAAGATGAAGCTGTCAGCCTCATCAGC
TGCAGGCCTTCTGCTGATTTTCGTTTATCTTACTGCAAGTGTACGAGCCC
AAGAAGAAGACGACCTATGTAAGAAAATATTCTACCTTTATTCAATCTTT
CATCGTCGTTGTTGCGAATTTTCGAATTATTTTAAGAATTAAAATAAATG
GCTTACATTTTGACGGATCAACGAAATATTTTCTAATGCCTTTGCAAGAT
GAGTATACAGCTTCATATACAGAAATATAGATATATTATATATAGATTGG
TTTTAATGGAGAGAGTTTTAGTAACCAAACTAAAATCTACAATTATAGTA
TTTTTTGCAACTTTTAATGAAGCTCTTCACTTTATGTAACGTCATTTTTA
AGTTGGGAACGACAACAAAAAGCCTGGCAAATGTCCAGTAGTTGAAGACA
TCCCTGGAGAATGTCCAGATATTGACGATCAAGAATGTTTGACTGATGAT
ATGTGTTCTGGTGATTTGAAATGTTGCTCTGACGGATGTATGTTAAGATG
TACGGTTGCTGAGGCTTCCATCATCGTCAAGAAGGGTGAAATTGGCGAAC
CAGGAGATGCTGGAGAAGATGTAAGATTTAATCACTTGTTTTATATAACG
TTTTTAATCAAGCACAACAATCAACCATTTTCATACTAAAATAAGCTTAG
GCCCTTACAATTCACCCCATCACGCAAGTATAGCATTTAAGCATACATCA
AAGGAAGAAATTTTGGCGGGAATTTAGTTTGGCGGATGGCCGAAAAAGTT
TTTAGCGGTTGCAGGATATTTAGTGTCAAAAATGATAGCAAAATTGTTGA
AAACCCTAATTTGGAGCCTAAAATAGGACGAAATTTGGCGGTACGTATGG
GTAAGATTGGCGGACGGCGGAAAATAGAGATTTTGGCGGGAACTTAATTT
CTCGGGGAACTTAATTAATGCATGTCCCGGAATTGCATTAATTTTTCCGC
CCCAGTTCCAGTCCCTAAACCATAACAAACTAAACATTTTTGGAAGCGTA
TTTGTATGTAGAATACCGTATTCGGTGTAACTTAAATTTTTTCTCAGTAG
AATTAGAGCTATCTTAAGAAAACCTGATTATGACGTCACGATTGATGACG
ATCTCGAGAAATATAAATCAAAACTTTATGAAATTTGGACCAGTGATAAA
GTACATTGAGATGTTTCAAAAATTTTAAAAGTATTTCCCAAAATTAATGA
CGTCAGCAGAAATTGCAAGATTTTGAATTTTTGCGATAAAATGCTGACAT
CAGCAAATTTTCAAATTTTTTAAAAGAATTCTCCTCTTATTGATAAGTTC
TATCATTGGTTCAAATTTCGTAAAGTTTCGAGTATTAGTTCTTGAGATAT
TCATCTTTTTAAAATTATGACGTCATAAATAATGACGTCATAATCACGTT
TTCTTAAAAAAACTCAAATTTTGCTGAAAAAAAAATTAAGTTACACCGAA
TACAGTATTCTACATCCAAATATACTTCCGAAAATGTATAGTTTGTTATG
GTTTAGGGACTGGAACTGGGGCGGAGAAATTAATGCAATACACCTTTTTC
CGGTTAGCCGTTTCGTATAAAAAGTCACCAAAATTTCGAGTAAACAAACC
ATCCCATTGGCTAAAAGCAAAAGCATAAACAAAAAAACGTACAGAGTATG
AAAAAAATGTGCTTTCTCTGCTCTTACTCTGGACATTTTTTATGCTTTTG
CTTTTAGCCAATGAGATGGTTTGTTTACTCGAAATTTTGGTGACTTTTTA
TACGAAGCAGCTAACCGTAAAAAGGTGTATTCGGGGACATGCATTAAGTT
ACCCGAGTTGGCGGATTTTGGCAAAATTTTTTCTTTAATGTATCTTACGA
AAACTGTCCTCAAAAAAATATAACGATGCGATGACCCGAGTCAAAATTAA
TAAAAAGGAACTTTACCTGATCGAGATTTCTGTCTGATTTGTTTAGGGAG
CACAAGGTGAAAGCGCTGTTGATGGAAAAGAAGGACCTGCTGGAGCCAAG
GTAGGAAAAATATCTCGTTATTCAGGACGAAATTTTTGTTGCGTACACAT
TTATTCTATTACAAAAACTTTAACATTTTAATTTCCAAAAGGGAATTTTG
TGTCAAGAAATTTTAAATACTCTTTTTATTCATGTAAGTCTTTTCACTAT
AGGAAAAAGCTTTTCATAGACCTACAAAGTGGGTCTATAAAGCATTGTTT
TACAAAATACTTTTTTTAGAAATTTTATCCGTATACCTCATCATCACCAA
ATCTTTTTATTTTCAATCTGTAGGGAAAACCTGGTAAAGACGGTTCCAAG
GGAAAGAAAGGAAAACGGGGACGACCAGGACCTCCAGGACCAGCAGCCGG
CGGTGTCGTACCAGGGCCAGTTGTTGAGCGACCTGTGAGTTGTCTTTTAC
TTTTACAGTTTATGAATTAACCGCAAATATGGGGACAATATTAATCATGT
TTAGGAGGCTAGGGGTCAAAAGGAGATAAGGATGAGAATAAAACTATATA
CGAAGATTTAAATACCAGTTGATTTTATTGAAATTGCTAAAACTGATATT
GTTCGTTCGGAATGCTAATAATGTTCAATTTTTATCTCATTGAAGTTCTC
GCCAATTGATGTTTAATCATTTTGTTTCTCTTGAATCATCAGCTTGGCAG
CAAACCACAGGCACCATGGTTGAGTGGCGCATTGAACAGTGAATTTGGAG
AAGATATCATGCCACCCATCCCAACAAGCAAAGATGCACCAACTGGCGCA
AAAGGCGAAGAAGGTCCCGAAGGATATCTCGGACCTTACGTAAGTACATA
TTGAACTCTCTCTAACGAACCAGGCTGTGAAATATTCATCATTATTATAC
AGTAACACTTTCTACAACACGAACATCTATAACTTAAATATCTAATCCAA
CAAGCTCTTAGAAATCGTGGAAAACGATTTCTCGATGGACTAAGATACCT
ACAGTAGTTTGGGATCTCCTGCTGTATCAAGCTATTTTGAAAGAATTAAA
TATTGTTATCAACATTCTGGCATCAGGATTATATTGAAAACAATTCATTA
TTAAATAAAATAGCCTAAAAAACAGCTTCACAAACTCGAATATCACCGTA
ATTTGAACGATTTGAGTTATGAAGACTCCATTGCATTCGAAATCTGATCA
TTTTCTTTTTCAGGGTGAACGTGGCAACCCAGGGCTTCCAGGTGTGATTG
GTGCTGGAGGAGATGCGGTAAGACACACCTTTCTTTCGTTTGATTCTACA
CTGCTAAGAGTGGCAAAGTTTGCACTCACTATGGAGAAAAAGACTTACCC
AGGCTAACTAAATATTTGTTTAGAAAATCAACAAATACAAAACCAATAAA
ACCAATAAAGCCAGCATCACCTTCCCCTCGATACTTGAACCCAGACCCTT
GAGCTATCACTCTGACTTATTCCCAAAAGTTTGTTTGTTCGTTTATCGTA
AAAGGTGTCGTCATACTTGTTTGGGTTTTTTGACATGTCATTGTTGTGTA
AGATTGATGAAAACCGCACTAGTCGTTTTGGAAAACTGTTCTCATATCTC
TCCTGATTGTTGTTTCTTTCAGCAAATCAAAACACTCGATTGATCTTTAA
TATCCACTCTTTTTTTCAGGGACCAAAAGGTTACCCAGGACCATCAGGTG
CGACTGGACGTTCCGGATTACCCGGACGCCGTGGTCCTTCCGGTGATACT
GGAGAAGCAGGATTCCCGGGACCAATGGTGAGTTTGCTAATCATTTACTT
CTATTCTTTTTACTGCTTGAGACTGAACATTAATGCAATTATGGATTTTG
CATCACGAGTTAAAGAAAAAACTGGTTTCGACCGAAAGGACCAAAAATGC
CAATATTTGACACAAATCTAGCAAATTGATTAGAAGCTTTACCTCTGGTA
TCCCTTGTATCGAGCCAGTCAAACAGATCCACGCAGCGAAAAAACGATGT
ATCAATGTAGCTTTAATTACAGCTACAAGGAAATCTTGTTCCAATCTTTC
ATGTGATGCCTTTTTTGACACCAATGTAAACTTCCTATGACTCTTTTCAA
GCTAAAATTTGGAACTGATAGCTTTTCATTGACCCATTCTTACATCGAAT
GGCAGCAAGTCGGCAGCCTGAAGTAGGTATAAGAAACGTCACATCTTTCT
GTATAGGGAGAAGCTGGATCTCCAGGAATCCGTGGTCCATCAGGCTACAA
AGGGAACAAAGGAGATCGTGGAGCAGCTGGAGAAGTCGGTGTCGCTGGAG
AAGCAGGTGAAAAAGGAGAAGCAGGAGAAGCAGGAGCTGATGGTGACCAA
GGAAGAACTGGTAGCCCCGGTGAGCGTGGCCAACGCGGTCCACAAGGACC
TGCAGGTGGAGCAGGAGCTAAAGGAGATCTTGGTGCCGCTGGTGCCCCTG
GACCTGTCGTAAGTATTGTTGTCTACCCTTCAATGGATTTTGTTTGAAAA
CTTTCGGTTTTATTTTTAGTTACTCACGTCTTTTTTGTTTTTCAAGCATT
TCTATACCTTTTGAAAAGTTGTACATCATAAAATTAAAGGTTTAAGTTTT
GAATTCAATACCTTAGGGTGTTGCTGGATTCCCTGGAGACCAAGGAGATG
CTGGAGCTGACGGAGTAAAAGGAGAAGGGGGAGACCCTGGACCAAGAGGT
GTTCAAGGACCTCAAGGAAACATGGGAGACTCTGGTGCACCTGGTTCTCA
AGGAAAGAAAGGAGAACGAGGTCGCAATGGACGCAATGGTAACACTGGTC
TCAAAGGTAATACTGGACGTCGAGGAAGCTTTGGTATTCCTGGACCTGTT
GGACAAACTGGATATCCAGGAGCCACTGGACCAGAAGGATTGATCGGTGC
TACTGGAGCTACTGGACCAAGAGGAGACACAGGAGCTCAAGGACCTGGAG
GATTCAAAGGACAAACAGGTGATCAAGGAAGTCAAGGTCAATCTGGCGCC
ATGGGTGTTCAAGGGTCTGTTGGCAAAAAAGGTGCTGCTGGTCCACCAGG
AGCAGCTGGCGCACCAGGAAAAACAGGGTTTATGGGCAAAATAGGAGAAC
GAGGATCAGTCGGTGCATTAGGAGCCAAAGGAGGTCTTGGTGACCGTGGA
GCTCGCGGAGAACAAGGTAGTAGTGGAAATGCTGGAGGACCAGGAATTGA
TGGAGCTGATGGAGCTAAAGGAGAAGTTGGTGCCCCAGGTGTTCAAGGTG
AACAAGGACCATCAGGAAACCCTGGCAAGCGAGGTGCAGGTGGTAAAGAC
GGACGGAATGGTGTAGAGGGTGCTCGTGGTGCACCTGGAAGTCCTGGAGC
CATTGGTCTTCAAGGAGCCAAAGGAGCAGCAGGTTATCCAGGCAACGGTG
GTGAAGCTGGTGTTAGAGGTGCAAAAGGAGCTCGAGTAAGTGGCAAAAAG
AAATCTTTTTCAGATAGCAATGACGAGGGACAACAGGAACTTTTTTTTTT
ACAAATGACCTGTATAATTCATGAGTATGATTTTTGATTCGTTTATTTAT
TGGTTTTATTGATAAGCTGCGATACCTCTGAGCCATATTTAGAGAATTAA
AAAGTGATTTTTTATGATTTTAGGGAGATATCGGAGAGAAAGGGGGAAAT
GGACCTGTTGGAGTGAGTGGTTTACCAGGAGGCTCAGGAAGCCGTGGCGC
AACCGGTGCACCAGGACAAATGGGTGCACCTGGACCAGGCGGACCCATCG
GAAATGCTGGACAACCAGGAAAAACAGGACAGACAGGTGCCAATGGATTA
CAAGGAGACCGAGGAACAAGTGGAGCTGCTGGACAACGTGGTCAAACAGG
ACCAGGTGGAAAACCTGGAATGACTGTAAGTACACACTCTTTCGATAAAA
TATTATCAAGTTGGTCAGTCTGAGGCAAAAACGGCCTGAAATCAATTTTC
TACGCACACTTACTGAGCTTCGTGTACATAGTTCTAGTCTGAAAGAATAA
GAGCACATTAGAATATTCCAGCCTTAATTTTGAAAACATTCTAAAGAATA
CCCACTAGCCAAANAATATTCCAGCCTTAATTTTGAAAACATTCTAAAGG
ATACCCACTAGCCAAGACAACTAGTCATATACAAATATTCTTTGAAAAGT
AGAACTTGAGTGTGTATTTTGTAGATGGAAAAGACTTACTTTGATTTTAA
TTCATCTTTTAGGGCACACGTGGAAACGATGGAGAAACTGGGGAGACTGG
ACCTGAAGGAAAACAGGGTGCTAAAGGACCAAGTGGACCACAAGGACCCC
CTGGTATCATCGGAGCCGTTGGTCGACCAGGAATGCACGGAGCCCGTGGA
TCACCCGGCGGTAAAGGAGCGCCAGGACCACGAGGAAAGAATGGAAAACG
AGGAGAAGATGGATTACCAGGAGAAGTTGGTGCTGATGGACCTGTAGGAC
CCACTGGTACCGCTGGTGCACCTGGAGCTAAAGGAGTGGCCGGACGTAAA
GGGTCCAGTGGTCTGACCGGTAAACCAGGACAGCAAGGGTTGGCTGGACC
CGCTGGTGAACAAGGACCACGTGGTGATGGAGGACGACTTGTGAGTATTT
CACTTTAATTTTGCCCAAATGACTCCACAGCCTTTGATTTGAAAATAGTT
TTGGTTTTCTATAAAAAATGAATAACAATGACCTAAAGTGAATTTCAAAA
ATGTCATAGATCTCTACGGAGAGACAATTTTCAACATCTTTCTTTTCTTT
CATTTATAGGGAGAGAAAGGCGGTGCAGGAAGCAAAGGTGCAAGAGGAGT
CCGTGGTGACCGTGGAGCAACTGGAAAAGCTGGTGCTGATGGACCCGATG
GTATTACTGGTCCCGAAGTAAGTCATCCATTGAAAGTTTAGTATTTTCAT
TTGAAAGTTACCTCTACACACGCCATTATTTTTTCAGTCNGGTATTACTG
GTCCCGAAGTAAGTCATCCATTGAAAGTTTAGTATTTTCATTTGAAAGTT
TACTCTACACACGCCATTTTTTCAGTTGATCTTTGAAAATCTCTTTCAAA
ACTCGCATTTTGCTTGTGGTTTGATCAGACTTTGAAAGGGCATTATCGCG
ATTTTCTTGATCTGACTATATTTTTTATATTATATTCTTTCATATTTGGC
TCGAATATCAATGTTCTTTATTCATAGGGTATTAACGGAGCGTTTGGAAC
GAAAGGAAGCAAAGGACCCAACGGTCAATCCGGTGGTATGGGTTTCCGTG
GTGAAGATGGACCGGTCGGAGCACAAGGAGAACGAGTAAGTCTAATACTG
TTTTGATGCTTCATGTCTTTGGAATACTTAACAGAGGCCAGAGATTTCAT
TTGCAAGTTACTAAAGATGAGACTACCTATTCGAATCAAAGAGGGCTTCC
GACTGATGGTCTTTCCAGGTGATTTGGTTTGTTACGGAATGCTCTAGAAA
GAGTCAACTGATCCTGAACATTTGTTAAAGATTTTCGCATTCTGTTTTGC
TTCAAGGTTGACGTTTTACATTGTTTTTAGGGTATCATTGGAAACCTTGG
ACCACGTGGAAAGATTGGACGCGATGGATTGAAAGGAAATCAAGGTCTTG
AAGGACGTCAAGGAGCCGATGGACCACGTGGTGAAGATGGAAGACCTGGC
AAAGATGGTCTCAATGGAGAACCAGGAAAAGATGGTGCCACTGTACGTTT
ACAAGTGTCCTACAGCTGATGATTGACTTTTAGTTCACTATCTTTAGGCT
GAAAGTATTAATTATAAAATTCTACCAGAATAATTCTGAAATTCTAATTT
TTTTTTTGAGTTTGTTTTGATTTTTGATTTTTGAGCAAAAGATTATAAGA
AATAGATTTCGCTCTACAAATGGTAGTGGACATTTTTTTGAGACTTTCTT
CATATTAACGATTTTTAAGGGCGAACAAGGAGAACCAGGCAAAGCAGGAC
AACCCGGATTCCGCGGAATGTGGGTGAGTAAAACTTTTCCATTTTTTCAT
CTTTCATCATTTCATTTCAAAAAGACTTTATTAGGCTGAAAAAAATTCGA
AATATCTTTTAAACCTGTAAACATAATAACAAATTATTTTTNAAAAAAAT
TCGAAATATCTTTTAAACCTGTAAACATAATAACAAACTATTTTCAGCTA
TACTTTGCGATGTTTTGAAACGTAACTTGTCTTTCAGGGAGGACTTGGAT
TACCAGGGCGTCCAGGACCACAAGGAGAAGCTGGTGAATCAGGAGACGCC
GGTCTTGATGGTATTGATGGAGCCAAGGGAAAGAAAGGATCTACTGGTCT
CCAAGGACGTGTTGGTGAACGCGGTGCTACCGGAAATGCTGGCCTCGCTG
TAAGTTCTTTAGCAATGACTCAGAATTTTCATTTTTAATATTTTTTAAAG
GGGACAAAAAAACACATTTCCTAAAGAACCTTCATCGACCAAATGCTTTT
TTCACAATAGCCATATCATCGAAAGCAGTCTATTTAAAGTATGTGCACAT
CTGGAAAACTAATTCTAATCATTAAGAAACTTTGATATCAATATATTACT
GTTGGATTCATTCTTATTTCAATCTTGTTTTTGACAGGGCGTGAATGGCG
TTGACGGTAAACCAGGAACCAACGGTGAAGACGGTGGCAAAGGAGAAACA
GGGGAGACTGGCCTCGCCGGACAACCCGGATCACAAGGAGATGTCGGCGC
AAGAGGACCAATGGGAACCAAAGGAAAAACTGGACCGAAAGGAGAAGATG
GTATAATCAATTATTTTCTAATTTGAACTATTAAAGTTTTTCCTAATCTC
TGTTTAACTGGGAGCCTCTACGATGAAGGCTTTCAATAAAATCGAACGTT
GAGGCAAAACTTTAAAATCTTTCAACATTCAAATTTTTCTCTTACTCGAA
AAAGACCTAAAACCATCAAAGGTGTTTTACCATTGTATCTATTTTCACCA
TTCTGTATGTATTTTAAAGATTTAAAGACTGATTTAAAAAATTATTTTTC
TCGAAGGTGTCGACGGAGTTTCTGGAAACCCCGGGAGAAACGGTGATGCT
GGTGCCAATGGAGATCGCGGAGAGAAAGGAAACCGTGGTGCACGAGGAGA
CAAAGGAGCAAAAGGATGGAAAGGTTACCGTGGATACCCCGGTTACCCAG
GATACCGTGGACGATCAGGAGCACGTGGTGAACCAGGTGTCAATGGTGAA
AAAGGAGAAATTGGAATGGCTGTGAGTTTCTCTTTGCTTTGGAGATCTTA
TTCATAATTGTGATCTTGATTGAAAATGTTTTTTTTGTTAAATGGTTGTT
TAACTAACTTAGCTTGTTAAATTACTTTCGCCTGAAACATCCAAGACATT
TTATTTTTTTAGTGTTGACAGATCCCTCTCACTAAATTACCCAAATATCA
TATCGGGGAAGTTTATAAATCTAACGTTTCACATCTTAGGGATCAGCAGG
TGCTCCTGGACCTCGTGGTCGTGAAGGAGAACCTGGAGAAATTGGAGACG
CCGGCCTCGATGGTGCCAAAGGAATAAAGGGTCCTCTAGGTCTTCAAGGA
GAAAACGGATTTTCCGGACCCGCAGGACCACCTGGACCAAGAGGATCACC
AGGACCTGCCGGAGGCTTATTCGATGCAGGCTCTCTTCAGAATTATTACC
CATACCAACAACAAGCTCCACAAGAGAAAGGACCAGCTCATTATGGTTAT
TACTACAATAATTACTACAAATCAAAGCAACGCCGACGTCAAGGTGCAAT
GGACCTTATGGACGATTTGGAGATCCGTGTTGAGGCTGAAGGAAAACCCG
ACGGCAGCAAACAATTCCCTGGTAAAACATGCCGTGATATCCAAATGTGC
TTCCCTGAAAGCAAAACCGGTAAGAAAACCTATTTCTTGTTTCTTTCACC
TCTACTGGAAGTTTCTTTTACCTGCTCTCCTTAAATAAATGTGCAATTTG
CAGCGTCGGCCCCTTATTTGTTGTTACCATCCATTATTGAATATCTACAT
TTTTTACATTGAAAAAGGCTACTAATAGAATTTGTTGTTGTATATATGAC
TGGACCGACTTTTTAATTTTAGGTTATTACTTCATCGATCCTAATGGTGG
TGGCAGCGACGACGCCATTGTTGCTCATTGCAACTTCGAGAAAGCAGGCG
AAGTAGAGACATGCGTCAATGCTGTACAGACGTCTTACGAATTAAAAGAC
TGGGTACCAACTGGTCAAGATGCTTACAAATGGTTCATGTGGGACATCCA
AACCACTTTCGATGATAAGGTTAATATTCGCGCAAATTTTTATGCGGTAT
AATTTGCGTTAGTAAACTGACTTAAACTGACTTAAGCGAATGACACAATA
TTAATCCCTGACTCTCTAATCAAAATAAACTTTCTAAATTTAAAATTAAA
GGATATATTTTGTGAAAGTGAGTTTTTAAGGCAGTTTTGCGAAGAAGTCA
ATTTGACATTCCCTATGATGTATGACTCTCATGTAATATTTTCATAATCT
GGCTTTTCAATTTCATTTCTTTCCTGTAACTAACTTCGTCAAAAGGGCGG
TTTTTTATTGGGTGTTTGAAACCTTATGATAATTTTAAGGTTCCTTTTGC
TATGACTTTCTCTCTTCTTTTCGTGATAGACTTTCGTGTTGGCTCTAGCA
CATCATCCTCCCCTTAATGTCAAGGCTAAAGTCTAGATAATGTAATTCAT
TACATGCAAAGACTAAAATTTTCTTCAATAAAGTAGAAACTCCGTTGAAC
TTGGTTTTGCTAAAATCGCGTCAGCTCACTGTGAATGACAATACGTTAAG
CACTCCTTTCATGTTCTTCCCACAGATTCGCTACGAACAACTGAATACAA
ACGCACAAATCAAATCATTGAGGATTGGTCACACTCAAGCTCGTCAAAAC
ATCACCTATTTGTGTAAAAACTCGTTCGCACACAAAGACGCTGACGGCAA
ATCCAACTCTTTCGTCAAAGTTTTATCCAACAATGGAGACGAAGTTCACG
TCAATGGACGCCGTCATAAACGACTTGACGTATTGAGGGATAACTGTCAC
GTCAAAGACGGAAAATCAAGAGAAACTGTTTTCGAATATTCGTCACGACG
TACAAACGACTTACCTATTCGAGACGTTGCCGTTTTTGACGTTGCCGACT
CCGACGAATCTTTTGGATTGCAAATCGGTCCCGTATGTTTCTCATGAATG
TGAGATATAAAAAATTATTAAAATTTATGCACATACATTAAAGTTTTATT
TTTCATATAAAATTCTTTTAGTTTTGTAAAATATTTTGAAAAATCAACAT
TTTAACGCGCGCGCATTGGGACAAAAAGGAACTGGCTGAAAATATGGGGG
GTATTAAAAAATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029934	XLOC_029934	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_118	supercontig	scaffold_118:179333..191496 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2528	2.17459	1.40743	0.556965	2.28936	2.04672	1.86814	2.64071	0.568232	2.02727	0.744947	1.09708	0.855557	1.5849	1.02767	3.31157	79.1719	14.9028	1.10877	1.24027	851.883	878.452	268.654	381.506	720.916	478.027	15.282	7.80969	2.14736	1.64557

Blast

[Close]

BLAST of TCONS_00046925 vs. Swiss-Prot (Human)
Match: CO5A2 (Collagen alpha-2(V) chain OS=Homo sapiens GN=COL5A2 PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 2.500e-44
Identity = 87/244 (35.66%), Postives = 129/244 (52.87%), Query Frame = 1

Query: 4261 KQRRRQGAMDLMDDLEIRVEAEGKPDGSKQFPGKTCRDIQMCFPESKTGYYFIDPNGGGSDDAIVAHCNFEKAGEVETCVNAVQTSYELKDWVPTGQDAYK--WFMWDI----QTTFDDKIRYEQLNTN-AQIKSLRIGHTQARQNITYLCKNSFAHKDADGKSNSFVKVLSNNGD-EVHVNGRRHKRLDVLRDNCHVKDGKSRETVFEYSSRRTNDLPIRDVAVFDVADSDESFGLQIGPVCF 4968
            K +   G    +  L  ++E    PDGSK+ P +TC D+++C    ++G Y+IDPN G  +DAI  +CN E     ETC++A  +S   K W  +     K  W+  D+    Q  + D   ++  NT   Q+  LR+   +A QNITY+CKNS  + D   K+     VL    D ++   G    R  VL+D C  ++G   +TVFEY ++    LPI D+A  DV  +D+ FG++IGPVCF
Sbjct: 1261 KNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHSAKQSGEYWIDPNQGSVEDAIKVYCNMETG---ETCISANPSSVPRKTWWASKSPDNKPVWYGLDMNRGSQFAYGD---HQSPNTAITQMTFLRLLSKEASQNITYICKNSVGYMDDQAKNLKKAVVLKGANDLDIKAEGNIRFRYIVLQDTCSKRNGNVGKTVFEYRTQNVARLPIIDLAPVDVGGTDQEFGVEIGPVCF 1498

The following BLAST results are available for this feature:

BLAST of TCONS_00046925 vs. Swiss-Prot (Human)

BLAST of TCONS_00046925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CO5A2	2.500e-44	35.66	Collagen alpha-2(V) chain OS=Homo sapiens GN=COL5A...	[more]

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TCONS_00046925 (transcript) - C. hemisphaerica