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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046921 ID=TCONS_00046921|Name=TCONS_00046921|organism=Clytia hemisphaerica|type=transcript|length=2267bpRun BLAST on NCBI transcript from alignment at scaffold_118:164743..172702- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046921 ID=TCONS_00046921|Name=TCONS_00046921|organism=Clytia hemisphaerica|type=transcript|length=7960bp|location=Sequence derived from alignment at scaffold_118:164743..172702- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046921 vs. Swiss-Prot (Human)
Match: COLA1 (Collagen alpha-1(XXI) chain OS=Homo sapiens GN=COL21A1 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.872e-24 Identity = 122/320 (38.12%), Postives = 162/320 (50.62%), Query Frame = 2
Query: 716 GQIGQLGELGLKGNRGGPGLIGSQGLQGPTGGRGEQGPPGFQGKRGPGGSEGRTGLKGLEGQRGQIGMNGETGQ------------------PGVPGKDGENGSPGDDGLMGEPGPRGKEGLRGGRGQMGAL---GLPGYPGKQGEAGVKGDAGRPGREGSKGRP---------GGAGRQGNVGMTGGRGKPGKDGFPGTTGVDGQPGNSGEKGAKGINGFVGASGTEGMNXXXXXXXXXXXXXXXXXXXXXXLAGLKGEKGTDGQLGALXXXXXXXXXXXXXXXXXXXFRGFRGMPGIRGRAGTSGDTGIDGEKGQTGP 1585
GQ GQ G+ G +G G PG+ GS G+QG G G +G PG G +G G G GL G+ G +G++G G+ G PG+PG GE G G DGLMG PG +G+ G G GQ G G+PG+PG +G G KG+ G PG++G KG P G G+ G G G +G+PG G PG +G+ G+PG +G G G G G G +G G +GEKG GQ G G++G G++G +G G KG RG +G PG+RG G+ G++G+DG G GP
Sbjct: 470 GQPGQDGKPGYQGIAGTPGVPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDKGSPGFYGKKGAKGEKGNAGFPGLPGPAGEPGRHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEPGATGSPGEPGYMGLPGIQGKKGDK------------------------GNQGEKGIQGQKGENGRQGIPGQQGIQGHHGAKGERGEKGEPGVRGAIGSKGESGVDGLMGPAGP 765 HSP 2 Score: 94.7449 bits (234), Expect = 7.637e-20 Identity = 85/203 (41.87%), Postives = 112/203 (55.17%), Query Frame = 2
Query: 713 AGQIGQLGELGLKGNRGGPGLIGSQGLQGPTGGRGEQGPPGFQGKRGPGGSEGRTGLKGLEGQRGQIGM------NGETGQPGVPGKDGENGSPGDDGLMGEPGPRGKEGLRGGRGQMGALGLPGYPGKQGEAGVKGDAGRPGREGSKGRPGGAGRQGNVGMTGGRGKPGKDGFPGTTGVDGQPGNSGEKGAKGINGFVGASG 1303
AG+ G+ G+ GL G+ G G GS G G G RGE G PGF G RG G +G G G +G++G GM NG GQPG PG G G PG G+ G G +G+ G G G+ G +GLPG GK+G+ G +G+ G G++G GR G G+QG G G +G+ G+ G PG G G KG G++G +G +G
Sbjct: 568 AGEPGRHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEPGATGSPGEPGYMGLPGIQGKKGDKGNQGEKGIQGQKGENGRQGIPGQQGIQGHHGAKGERGEKGEPGVRGA------IGSKGESGVDGLMGPAG 764 The following BLAST results are available for this feature:
BLAST of TCONS_00046921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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