TCONS_00046918 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046918
Unique NameTCONS_00046918
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1216

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046918 ID=TCONS_00046918|Name=TCONS_00046918|organism=Clytia hemisphaerica|type=transcript|length=1216bp
CGGGATCATGACATGCGTCATGTCAATCAAAAACGTGTAAATTTTGATAC
TTCTTCTGTCTTAAAAAATTCATCCTAACCCTGACTGCCCTGATTTATCA
CAATGACTACCATGGGTTATCCATTTTGAATTCCATTACGTCACAATTAT
CATAATCGAAAGTGGTTACTTTTCCGTCCGTACTCTCAGACATCTCGGTG
AAAAAATTGGGGATCAGACAGAACAGGCTAAGAAGTGCTAAGAACTAGCT
AAACTGAACACTGACAACTGAACGGCCAAACAACAATGTCAACCAAATTT
CTCTCCagaagtttcattttttctatcGGAAGACAATGGTGTCAGATTCG
AAATGGAAGTACAAACACGGGGAAAGTGATCGTAGCATCAAAAGAACCTT
TCTGTGAGAGCTTAACCAAAGGAACTCGTTACTCATGGTGCACTTGTGGT
TTAAGCCACAAACAGCCATTTTGCGATGGAAGCCACGAAGGTTCGGGAAT
GCGGCCACATCGTATGAAAGCAGAAGAAACTTGTGAAGTCTTCTTTTGTG
GatgtaaacaaaccaaaacacCTCCTTATTGCGATGGCTCCCACATGAGT
GATGACGTACAGGCTTGCGTTATCGGTTCCTCTTTATCGTGATTACTTTC
ACGGGTTGAAGAAATTTCGAGatgaaatgaaaatgtcTTGATAACGAGAA
ATTAAAATGGCTGAATGGTTGCTTCTTGCTCTATTGAATTTATCCCTCTA
CAATCAGACTTGACCGTGGGAACTAAAGGTCTTCATTGGTACGCAGGACA
TTTTTAGAATAcagccccttctcacagacccgatgagtcagtgggggtaa
aaataacggaccaaaactcgatgggggaTCGATATTCACATgctttttta
tggctggggtttgaattcctttgttttcttgcCAAAACAtttagtgggga
tggaaaaaatagaacaatattttgcagcgaggatttgcttttctgattat
tttcattgGGCTCAAAAAATAGAGTatgattttccactggggacaatatt
ttggccagtgggtctgtgagaagggggtgttaaaatGTCATCTAGCTGCC
GAATTTCAAATCTTGTGCATTTCGCTCTAAAATTGAAACTGAGATACTTA
CGCTCGGACAATTACCAAGAGAATCATTTGCTTTAAAGactctttcgaaa
aaaagttactacaatc
Run BLAST on NCBI

protein sequence of TCONS_00046918-protein

>TCONS_00046918-protein ID=TCONS_00046918-protein|Name=TCONS_00046918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MSTKFLSRSFIFSIGRQWCQIRNGSTNTGKVIVASKEPFCESLTKGTRYS
WCTCGLSHKQPFCDGSHEGSGMRPHRMKAEETCEVFFCGCKQTKTPPYCD
GSHMSDDVQACVIGSSLS
Run BLAST on NCBI

transcript from alignment at scaffold_118:94146..109716-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046918 ID=TCONS_00046918|Name=TCONS_00046918|organism=Clytia hemisphaerica|type=transcript|length=15571bp|location=Sequence derived from alignment at scaffold_118:94146..109716- (Clytia hemisphaerica)
CGGGATCATGACATGCGTCATGTCAATCAAAAACGTGTAAATTTTGATAC
TTCTTCTGTCTTAAAAAATTCATCCTAACCCTGACTGCCCTGATTTATCA
CAATGACTACCATGGGTTATCCATTTTGAATTCCATTACGTCACAATTAT
CATAATCGAAAGTGGTTACTTTTCCGTCCGTACTCTCAGACATCTCGGTG
AAAAAATTGGGGATCAGACAGAACAGGCTAAGAAGTGCTAAGAACTAGCT
AAACTGAACACTGACAACTGAACGGTAAGTAAATTTTTTTACATTCAGCC
ATCATTTGAGATTACTTTCATAAGAAGTATGGGGTAACTTTCATAGTCTC
CAAAACTACGTAATTCTGTCAATGATTTATCTATAAGCCAGAAAGTCAGA
AGACCGCAAAAAAGTTACCCCTTTCCAACCCTTTCTCCGTGTATTTCTCA
GGCTTTTATTTAGGTTGGTACTGACTGATGCCAGAGAATACCCTGGTGTT
GGCTGATGCGAGTTCCCCTCAAAACAATACGCCATAAAAAATCTGGCGTT
ACAAAGTTACACTGCAGTGCAACAGCTTCAAAATCAAAGAACAAACGAAA
AATGAGGACCCTGTCGACGCACCGGACTTAACGAACACCGGACACGCGAA
AGTCCGGTGTAAAATGAAATTTTTTTTTACCACCGGACAATTTCTACACC
AGACTTAAGGAAGTCGGATGTCCTGTGTCGGAGAACGATATTTTTTCCCA
CCGGACAATCAAAACACCGGACGTGACCAGTCCGGTGCGTCCAGCGGTGT
TTCTTAATTTTTTGTTTCATAAATGTCCGGCGCTCAAAATTCCCTGTATG
CAACACCGGTGTAGCGAAAGGATACTTTTTCCCACCGGATAGTCCGGTGC
GTCTGCAGGGTCCTATGAAATGTGATGTTTTGTTTTTGAATTACGTAATC
TTTTGCAATTGAAAAACAGACAACAGTCAGGATTAACCGCCTAAATAGGT
ACAAATTTCTTGATTTCTAAAATACTCCTATCTAAGATATAAGTACTTAT
ATGCCTATATAAGTACTTATATTTTTTATTCTAAGGCCAGGGCTGCAAAT
AAATATTTTTAGTCAATCGGACATCATGTCCGACAGAAATGAAATCCTGT
CGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGTTGATAAAAGTGATCTTAGAAACACTCTTAATA
GTTAAGAAGAAAGCGAGTTGATAAAAGTTAACTTAGAAACACTCTTAATA
GTTACGAAGAAAGCAAGTTGATAAAAGTTAACTTAGAAACACTCTTAATA
GTTAAGAAGAAAGCAAGTTGATAAACGTTAACTTAGAAACACTCTTAATA
GTTAAGAAGAAAGCAAGTTGATAAAAATTAACTTAGAAACACTCTTAATA
GTTACGAAGAAAGCAAGTTGATAAAAGTTAACTTAGAAACACCTTTGGAA
GTTACGAAGAAAGCAAGTTGATAAAAGTGATCTTAGAAACCCTCTTGAAA
GTTACGAAGAAAGCGAATTGATAAAAGTGATCTTAGAAACGGGCTTAATT
GGTAAGAAGAAAGCGAGTTGATAAAAGTTAACTTAGAAACGCTCTTGAAA
GTTATGAAGAAAGCGAGTCGATAAAAGTTTAACTTTGAAACACCCTTGCA
TGCAAGTTACGAAGAAAGCGAATTGATAAAAGTGATCTTAGAAACGGGCT
TAATTGGTAAGAAGAAAGCGAGTTGATAAAAGTTAACTTAGAAACGCTCT
TGAAAGTTATGAAGAAAGCGAGTCGATAAAAGTTTAACTTTGAAACACCC
TTGCATGCAAGTTACGAAGAAAGCGAATTGATAAAAGTGATCTTAGAAAC
GGGCTTAATTGGTAAGAAGAAAGCGAGTTGATAAAAGTTAACTTAGAAAC
GCTCTTGAAAGTTATGAAGAAAGCGAGTCGATAAAAGTTTAACTTTGAAA
CACCCTTGCATGCAAGTTACGAAGAAAGCGAATTGATAAAAGTGATCTTA
GAAACGGGCTTAATTGGTAAGAAGAAAGCGAGTTGATAAAAGTTAACTTA
GAAACGCTCTTGAAAGTTATGAAGAAAGCGAGTCGATAAAAGTTTAACTT
TGAAACACCCTTGCATGCAAGTTACGAAGAAAGCGAATTGATAAAAGTGA
TCTTAGAAACACCCTGAAAGCTACAAAGGAAGCGAGTATTAAAAGAATAG
GCTAAGTAAGAGACAGGGGTGTAAGAGATTTATTTTCAACTCTCAAGTTA
ATGGTTTATTCCTTTTTTCATTCGGACATCATGACCGACACAAAAGATTT
TCAGTCGGTCAAATAGCTTTTTCAGTCGGACATTGACCGATGACCGACGC
TTATTTGCAGCCCTGTAAGGCGGTAATCGAAAAAATGCTCTGTTCGCGTC
ACAACAGGTGTTAAAAATGGCCAGACGATCTCAATCAAACGGAATCGACG
ATCTCAATCGAACGAAATCGACTCATTGACCCCCAGATTGTTCATCGCAT
AATTTCTACGGGAAATCGAAAGTAATTTCATTCGGCTTGTGATGTTTGAG
AGCTTGGATGTTGGGAAGCTGCAAGAATAAAGCCAGAGGATCTCAATCGA
ACGGAATCGACGATCGAACCAGTCAAACCAAATCGAACGCAATCGACCGA
TTGAAATTCGATTGTCGAACGCAATCGAATCTCAATCGAACATCAAAATT
CTGGGTAATATTCGATTGGTTCGATTGTTGTTCGATTGGTTTGCATTGGA
AATGCATGCGGGCAGACGGGCGGTCGAAAAAATTCCCGGGTTTTTTTAAT
CACGCCAGTAATTCAGGGGCGAGTGGTGACGCAAAACAATTTTTCGATGA
CCGCCTAAGCTAGGAACATTTTCTTTCTTCTCCAAATTTTTCATTTCAAA
ACAAAGTCGCATGTTCAAGTTATATATGACTAATAGTAAAATAGTACAAA
GTGGTTTCTTTTTCCCAAAATCAGCACTTTTGGTGGGTGGAAGGGTGGAA
AATCTTAGCTTTTGTGAAAAATATCTTAAATAGGAACATTTAAAAGGCTC
TCTTTACTAAAAAACAGGATTTGATGTGTAAATAGACCATTAATAAGCAG
TGGAATCTGCCTGGAAACTTTAAAATGCAATAATTCAATACTGCATTCTT
TCTGAAATTTGGAACACAGTTAGAAAATACCTAAATGAAAACATAGATAA
TAATTGATACATGTGACTTTATTTAGTTTTAGTGTAAAATAAAAATCTCT
AAAATATTCTAACCTTAGAATAAAAAATATGCCTAGATACTCTTATCTAA
GATATAGGTACCTATATCCTAGATAAGATTATTTTGTGAAATCGAAAAAA
TTATTCCTATTTAGGCGGTCAGAGGCGGTTAATCCTGACTGGACAATGCC
AGGGTATTATCTAGTGCTATCAGTGAGCATAAAAAAGGTAATAATGTTCG
GGAAAAATGTGTGTGTTTTGTTTTTGATATAAATAAGCTCTCATGTTCTT
TTATAACACCCCTTGGACATCTGACAATAAGGCTAGGCTAGACTACCTCT
TTTCTCTTTTCTATTCCAACAATACAATGCTTATATAGTTGACACTTAAT
ACACTACACAAAAACACATTCATTTAATTTTTAAGTGTTTCTTGAACTAA
TAAGCGTCTGCGTGGTAAGCCTAAATGTACACATGCAAACACATTTTTTA
AAAGTCTGTTCACGATAAGTGTGCACTCTTTTTTCTTTTACCTATAACTT
TCGAAGGAATTCTTCAATCTTTGTAAATTTGATATCGTTGGAAAGATATT
TGTGAGTGGAACAATTTGAAATAAAAAGGTCTCTAAAAAAATTCTAAAAA
CAAAGATGAAAATAAAGAAGAAAAAAATGAAGATCTTGTAGAAAAGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACTGGAGAGATTCTTTGA
TCTTAGGAGGTCATCACTGTGAAGAAATTTTACTAAAATATTTATTCAAT
ATAAAGTTATGATACAAAGTTTATAAGTGATTGACCCCAAAAAACAGCAG
AAAACAGCAGAAAACAGCGTTTTAGACGTCAACCAGCTTATAACTTTGTT
TGATATCTTTTGACTGAATGATTATTTTTGAAAAAAAATTTCACAGTGAT
GACGTTCGATGATCAAGGATTAATTTCAGTGAAAATGATAGTAATAGCAC
CTTTCTACAAGATCTTCATTTTTTTCTTTGAAGAATTCCTTCAAAAGTTA
TAGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGACTTTAGGTTA
CAAAGTCCAATTCAGTCCAAAGTAGCAATTATGTATGTACAGAGTCATTA
CGTCATGTCTTCGCCGTTTAAAATGTTATCCTAACTAGTAATATATATAT
CTAATAAATTAGCAGAGAAAACGTCACGTAATGATTATTTCAAATATACA
AACTGAAGTAAAAAAAAACTTTCACTGTGACCCAGCAAAGACTGTGTGGC
AACCAAACATTGTTTGAGTCACATACAAAAAGCATTGTTTTTTAGGATAC
AAAAACTACCGTTTTTTCCTTTAATATATACAGTGAAAGTGTCATTACCA
CTGACAACATTAAAACTTTTTGTATGTCATTTAGGTGCATTTGAAAATAC
CCTACAAAAGAAGACTGAGAGAGCCAAAGTAGCGATTTTTAAACATTACA
CAACTATAACCAGGGATATGTAATAGCAAAGCTGGATGAAGGACAAGAAT
TCTTTAGCGGATTGCTTTTNGATTTTTAAACATTACATAATAACCAGGGA
TATGTAATAGCAAAGCTGGATGAAGGACAAGAATTCTTTGGCGGGTTGCT
TCTTTGTTTTTTCTATTCTAAACTGTTCATAATAGAAATCCATCTTTGTC
CCCTTGAGTGTTCTGTTTTTATAAGAAAAATGAAGCAGACAAAGTATATT
CATGCAGTACATTTGCACATATTTTGCTACGATGTTCCTGCTTTTCATCA
AAATGATAATTGCAAAAGATACCCCAAAAGCTTCCTTGTAAATGAAATCT
AATTTTATCAGCGTGTGTTCTGAATTTGAGAAGTTTTCAGGATTCCTCTT
TAAAAATTCAGGATGTAAATATTTTGATAAATGATGTTTCAATTGACTTG
AAATTTTTTCCATAATCAGACAAACCGACTTGCTAACTGAAAATATCAGT
TAGAAAGTGAGGCACCCCGCGGGGTAGCGAGGTATTTCAAATGAAAAAGT
ACTATTTATAATCTTAGAGAAGAAACTTCTTATATAACTTTACTAATGAA
AACAATGTTTTTCTTCTTTTTTTTAATTGTCATTCACCAATGTTTTACAG
ACCCTCTTGATAATTAAAAGTTTTTAATCGTGAAAGATAAGTGCACCAGC
AGAATCATTGGCTAAGAGGAAATTCAAATTTCACGAGTTTGTAATTAAAA
AAATTAAATTTCATTATCAAATTTTAATGTCAGGGTACAGAGATAGAAGA
GGGCTTTTTCAAATGTGTGTTATCCAGCGGTTAGTGTAAAACGCAGGTCA
CAGGTCGCAGGTCACAGGTTACAGGTCACAGGTCACAGGTCAACAAAGTG
CAGACCAGAAAAAAGATAATACGATCATAACATATACATAACATAACATC
AATACATAACGCATTAAATTACAAAAAAGTAATACATGTTATTTAGATAT
TATCAAATGACAATTGAATAGAATAACAACCTAGTAACACTTACAAAAAT
AATGACAAAATCATAAAATATGATGCCTAACAAGACAATAAAGCACGAAA
AATATTCATTATACAAAATGTGATGTGGATGGTGTGAATGGATAAAAAAT
GGCACCAAATAAAACAGAAGCTTGCACGGTCCCTAAGAGAGTGGTTTTAG
AAGGATGGAACTAATTAATTATTTAGTTATTATCTTAATGTTTTAATGAC
AATTTTTGACAAAAATATTAACAGAATCATAAAATCTGATGCAAGAAAAG
ACAAAAACACGAAAAATATTTATAATACAGAATGTGATGTTGATAGTGTG
AATGTATATAAAACGGCACCAATCAGAAGCTTGTGATAGGGTAGGGCGTC
AACAGTCATTTTCGGGGCAAAGTCAAAAAATTCAAGATGTAGTGTTTTTT
TATGAAAATTTAACCTATTGTGAGGCATTCCGCGCAAATTTTAAGGTCAG
AAGTCCAAAATTGGCCAAACCCCCCTGGGGGTACTGATTCGCACTACAGG
CAAAAATTGGAAAAATGGCATTTTCTGGCCTTTTCAGGCCTGTAAATATG
TCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATTTTTTTCAT
TTGCTGTACTAAACTTTATGAAGAAACAACAAAATAATCATATTGGGTTG
AAAATTGTGCCCATTGGAGCCCTAAACGAGCCGTTTTAAGCGAATTTTGG
GTAGCAAAATGCTTTTTAAGGCCAATTTTGCAAGTTCATAAACTTTAAAC
TGATTAAATCACATGTCTGAAATTTTCAGAGATGGAGGTCTTCATTAAAG
TCTTTAAGCAAANGATTAAATCACATGTCTGAAATTTTCAGAGATGGAAG
TCTTCAATAAAGTCTTTAAGCAAAATGAATTTCAAGTTTTTCACTTTTTT
CAAAATATCGTAATGGCGTCTTCAAAAATAGCTTTTTAGCAAAAAAAAAT
CATATTTATCAAAAAATAGCATTTTTTAAGGCAAGCTTCTACAAACTGAG
TTTAAATGCTAACTGAAATTTTTTATGCAGTGATAGTATTCTGGAGATAC
TCCAGGGAAATCAAAATCATTTGGGTCTGGGATGCGTCTATGTCCGCCAT
TATGGAAATAAAATCCCTGCTAAGAGCCATTTTTCAGGCAAAAACCCAAA
TTTGAACTGAAAATATCTCTAAAATGACAATAGACATGGGCCCGAATTTT
CTTGCAGTGACAGTATTCTGGAAATACTGCAGGAAAATCAAAATCATTTG
GGTTTGGGATTTGGGTATATCCACCATTTTGGAATTGAAATTCCTGTTAA
AACGAAGTATTTCAAGCAAAAATCCCATTTTTGACTGGAAAAATCTTGAA
GATAGCAATAAACATGAACCTAAAATCTTTTTGCAGTGATAGCCTTCTGG
AAATACTCCAGGGAAATCAAAATCCTTTGGGTTTAGGATAAGGGTATGTC
CGCCATTATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAAATATGTGCTAAAACTGGCTAAAATGCAACATTTCAA
GCAAAAACCCCATTTTTGACTAAAAACTGCTCTGAAATGGCAATAGACAT
GGACCCAAATTTCTTTAAAGTGATAGTATTCTGTGAATTCTCCTGGGAAA
ACAGAATCATTTGAGTCTGGGATTTGTTTACATCCACCATTATGGAAATT
TTCATTTATCAGTACTGTACTCACATATATTTTTTATTGACTTCTCTCTA
CGGGGGCGGAAGAACAATGTTTTTGTTTTAGTTTATCTTGGGACCTGAAG
TGTTAGGGGACCTAGCACAAGACAATTTTTTGGGTGGAGCTAAATTGTTG
GGGGGACCTTACTTTGTTGGGGGAGCTAGAAACCTGGCTGAAGCTATGTA
ACATTACAAACATTACAATATGTAATATACCTGTTATACGTATAATATGG
TTTCAAATATTTTCTGATCTGCGCTATACACGGCGCAAACTGCGAAAGAT
TGATAAAAGCACATGGTTAAATTTTGATGTTTGAAATGGTTTTTATATGG
ATGAAATTGCTTGATAATTATGTTTTTGATAATTCTTTGTGTTTTCCAAA
CATTTTCCTATGCAATGACATTGATTAGAGTCAACCTGTCATCACTGACC
TGTGACCTGCGACCTGTGACCTGCGTTTTACACTAACTGGTTATCCAGCT
CCGCTATTACACATCCCTGCTAAAAAAAATAATAACAAAATATTTTCAAA
AAAGCAGTGAGGAAGTATACAGTATTCATTTTTCAAAAGAAGTACCTTAT
TATATTTGGTTTATATGTCACACTTTTTTATCACTTTAACTGCCATCTTG
AAATTCTTGCCGTAGTGTTAAATGCTTTTTTATTAAAGAAGTTCATCAGT
CTACTTGGAGAGGGAATAATTTTGTAAACATTATCTATTTACTAGCATAT
GTCTGGGGCATTGTAATTAAAAGCTCTCAAGGTATCAAAAAGACATTTTC
CTGATCACTATGTTATGTTGAATAATAAAAAACTTCTATGGCCTCAACAG
TGAAACCAGTGAGTATCCATTAAGATTTACAAAAAAGGGGTACCCAATAT
AGTAATGTTATGAATAGTGGGTGGAGAGTGAAAGTGAAACATTTTTTTGT
GAAAGTCAACACTAGTTGAACTTCTTCCCTGCTTTGGTTTTTAGTTACAG
TAATTTGTTTTCAGAGTAGTACGTACTCTACCCCTTAATAATAGTATAAA
ATGTTTTTTAAAGTGTGATTTTTTGTTGAGAAACCAAAGCTTCACCCCCT
GGCCGCAAGNAATAATAGTATAAAATGTTTTTTAAAGTGTGATTTTTTGT
TGAGAAACCAAGCTTCACCCCCTAGCCGTAAGGGGGGGGGGCTAAAAGGT
TCAACAACAACTGGTACCTAGAAATAGCTTCAGGTCAGGGGTCACCTACT
CAGCTAGGGGTCACCTACAATTATTCAAACTAAAATGGGGGCTGAATTCT
AAATTATTGTGTTAATCTCATGGTTGATTGAAATTCGATTGACGGTTTTG
CTTACGTTAATTTGTAATTTCCCGCGAACTTGTAATTTTATTCCTAGATT
TTATAATTTCCCGCAAAAGTACAATTTCCATTTCTTGGAAATTCATCACC
AATCTTGTTTTTCAAATTCTCAAACTTAGGGGCCACCTAGAATATTTTTT
CATTAGGGGTCGCCTAAATTCTAGGGGTCACCTAAATTCTCAGGGGCGAC
CTAGCACCTGCTTATAAGCGATGGAAACCAATTCCTGCCTAGAATCTTAC
TCACAATCAAACCCATCCCAATAAATTGTTTGTTTCGTTGAAAGGCATTG
TCTTGTGGTTCCGGTTAGCAGTGGTTACATGTTACTAGTATATATAGTAC
AAATAATAATGATATCTAATAACTAGTTGATTTATCACTTATTATGGGCT
ATTCTTCTAATAGCCGTGCAATTGTCACTTGTCTATCTGTCTGTCTTACT
CTTGGCACATAGCCGGCACAGCGTCTGTGTCTTGGCATATATCAACCGCC
AAGTTTTTGAGCTGATAATAACGTGGTCGATATTCCTAAGATGTTACGCA
ATGTTCGATACTGTAAAGGCGGGTAAAGGGAATAGTGAGTTGTTCCTTCC
GGAATGGAGAGTTCTCTTATAATCGACTTGAAAAATATTTATACAAAAGT
GAGGATGAGGACTGATCTTTTGTGATTGTCCTGATGCATAACTCTTGCCC
TAAAGAGCAAAACAAGGTGTTCTCTGAGGAGCCAAACCTAGAGAACCTGC
AAGGGAAAACTGCTGCACCAAACTCCATCCGAGTATAAATATGACAATTT
TTATAACTAACAAAAATATAAAACTTCTTCTTTTGATGGTCTTGGCCCTT
GTTTGATGGTATTGATGACATGTTCTTTTACTGCTTTCCGTATCTCGTAA
GTCATCCTTTGTCGCATAATGTCGTAAACAAAAAAGAGATAAAATCAAAT
ATAACTAAAATGGTTGCAAATATTTGCTAAGTATGCTAACCAGAGTCAAA
AGACCGAGTGATCTGCACACGGCTTGTCAGTCCTTTTGAATAGTTCCAGA
CTCAATGCTTACGCATGCGTTAAAAATATGTTTGCATAGGAACGGAAGGA
AAACAATTCCAAACATCTTCGAACGTCGGAAATTTAAGTGATGTTGATAA
TTGTGGATAAATCTTCAAATGTAACTCAGGCCAGGGGGGGGGGTTCAGGC
AGTTGATCCAGAACACTATGCCTGTTTTAACCGTGGTGGTCCATTTTCAA
ATTTCTATAAGGCGAGACCAATTTGATTGGTTGTTTTACGGGCCCGACCG
ACCCTGAAATTCCAAACGTCGAAATAAGAATAAAATTGATTTTGGTAGTA
CATTTTTATTTTCATAGCTTTATAGACTGCCAATTTTTCAAAATTTTGGT
ATTTTTTCTAAGGTTTTGAGAATTTTATGTTTAATTTTTCATTTTATCCG
TGAATTCGACTTTTTGTGTCTTTTTAGTTTCTATTTCGTATTTTTGTCAA
GATGTAGTAGTTTTTGCTGCCTTTTTAGGAAATTTTATGGATGAAATTCT
ACTTTTGGATCAGCAGTTTTGGATCATCTATTCCAGTTTTAAAAATTCTT
GAGGCCTTTTTCATTAGCAAATATATAGGCTGGTGACCAATTTCTTTTGT
TGTCGGGATAAGAGTTTCCAAAACTGTAAACTCTTCTTTATTTAGAAATC
GTATTTTCAATACTTTGGGAGCACTCGGGGATTTTAGAATTCCAGTCTTC
GACCAGCACTAACCTAGCACAGCCTAGCACTGCTATTTTTGGACATTTGT
TTGAAAGAGCTCTATTTCTTGATAATAAATGTCATCGTGAGTGACTGTTT
TGATTTTGGGTCACTTTAATATTACTGCATGCAGAAAACTCAGTTTGAAG
ACTGTTGGAGCGCTTAAGGATTGCCTATTCCATTTATTCCTACATTTACA
AGGTTTGAAAATGGAACGTCTAATCCTGTAAAGCTTGCGATTTTGAACAA
TAAAACGCAAGAATACGAGAGAGCTGTTAATAATGAGTCGCTCAGCAATA
TTTTAGTTCTGAAAAAGAGCTTTTTAGGATCAAGAAAATCCTTATTTTTT
CGATGTTCTTTAATAGAAACTTCAAAACTTTTTCATTTTCCTCAAACTTT
GAAAGTTTTTTATTTGGAATTAGTGATCCCAGATGCTCTTTCACGAATAT
ATCATATGATTTTACAGTTTAAATTTGTTGAGTTTTTGTCGTTTTTTCTA
TTTTTAAACAGTTCCAACAAATATGTTTCTTGAAGCAATAAAGTAAAAAT
TTATGTTTCAATCATTAGATTTGTTTGTGATTGATGCTGCAGAGTGCTCA
ATGAAATCAGAGCCAATTTAAATTTTTAAATTTTAAATTTTAAATTTTAA
GTTTCAATCATTATGAGTTTTAAGAGGAATCCTTGATCCTAAGCGTCTCT
CAATAACCTAAAAGGGTCCTGTACTACTCTATGATACTTTGCCATGAAGG
TTTGATATCTTTTAAAGACTAATGAAGTCTGACGTTGCGTGGAATAAGAT
GAAACATTCGACTTTATTTTCTCTAACTTCGAACCAGCTTGATTTTGGAA
TGCTTAATCCAAAAGTGCTCTTCAGTGAGGATTTATAAAATATAGGCATT
AGACTTTAGGAAAACAATATAATATCCTTGGAGATGATTGCCAGAGTCTC
ATAATAGATAGAAACAGAAAATCTTTATTTTTGGAATATCTGATCCCTCT
CTGCTTGAATAGAAAAAAAATATATGTATACAATCCGATTTTGCATCTTT
GTGGAACTTTTCATCCAATAATGCTGATTTTTCTTTCCGTCAGATCAAAA
AAACTGTTTTTGACGAAAATTAAGTCGTCAGGTTTTCGCCAAAAGTGTAA
AAAACATAACACAACTTTGTAGTTTTAAGCAGATCTATATTTTTTTCAAA
AATCAAGAATCAGTCCATGCTAAGCAGAGTAAACAGTATCTGCTTCAACA
TTATAAAATGGTTTAACTGACTTTTTCTAGGCCAAACAACAATGTCAACC
AAATTTCTCTCCAGAAGTTTCATTTTTTCTATCGGAAGACAATGGTGTCA
GGTATGGTTAAACTCCTTTCTTGTGATAAAGGATTATACCTTTATCAATA
AGTAAAGAGGTAGACAGGTTTTTGTGAGGAGGACTGAGTTCAATTCTCAT
ATTGGTATTTCAGTTCATTTTCCNATGGTGTCAGGTATGGTTAAACTCCT
TTCTTATTATAAAATGTTTAAGCAGGTAGACAGGTTTTTGTGAGGAGGAG
TGGACTGAGTTCCATTCTCATATTGGTATTTCAGTTAATTTTCTGAACAC
ACCTTAAGCCGCATTTTTACTGCCTTACGCAATAGTAGGTGATGCCGTGC
ATTGTGTTGTGTTAAAACAGAGTAAAACATCTGATAGTGACAATAAAAAT
GTACATGGTAAAGTCCATTGGATTCCTTTATAACATTCTCATGGTTATAA
GTGGTATGAGTTTTATTTAGAAAGTATGGTACGAAATTGCGAGAATCTGA
TTGGCTTAGAGAAGTGCAACGAATCACTAATTGCGCTATTAAAACTTCTT
GTTGTAAGACTGCATCCCTCTAAACCAACCAGAGTGACTCGAGTAATTCT
GCCCAACTGGCGATTATGAAATACTTCTTCTAATCTCATGGTTGATTGAA
ATTCGATTGACGTTTTTGTTTACGTTAATTTGAAATTACCCGCGAACTTG
CAATTTCCCTCCTAGCTTTTGCAATTTCCCTCCTAGCTTTTGTAATTTCC
CTCCTAGCTTTTGCAATTTCCCTCCTAGCTTTTGTAATTTCCCTCCTAGC
TTTTGCAATTTCCCTCCTAGCTTTTGTAATTTCCCTCCTAGCTTTTGCAA
TTTCCCTCCTAGCTTTTGTAATTTCCCTCCTAGCTTTTGTAATTTCCCTC
CTAGCTTTTGTAATTTCCCTCCTAGCTTTTGCAATTTCCCTCCTAGCTTT
TGTAATTTCCCTCCTAGCTTTTGTAATTTCCCTCCTAGCTTTTGTAATTT
CCCTCCTAGCTTTTGCAATTTCCCTCCTAGCTTTTGTAATTTCCCTCCTA
GCTTTTGTAATTTCCCTCCTAGCTTTTGTAATTTCCCTCCTAGCTTTTGT
AATTACCCTCCTAGCTTTTGTAATTGCCCTCCTAGCTTTTGTAATTGCCC
TCCTAGCTTTTGTAATTTCCCTCCTAGCTTTTGTAATTTTCCTCCTAGAT
TTTGTAATTTCCCGCAAAAGTGAAATTTTCATCGTTTGGAAATCCATCAC
TATTTTCGACTTTCTTACTAACTTCAAAGGCTTAAATAAATGGAATACTA
TCCAATTAAAACTCGATTCACGTTTCTATGACTTTTTTTAGACCTCTTTT
TAAATTTTCAGATTGATTTCCTGTGTTAAATTGACGTCTTTCAGAATTGT
TAGAATTTCAATCCAAACCATGAGATTAACCAGGAATCACATGCTTGTTT
TCGTGAAATTCTGGATAAATTACCCTCGGTCAAATTTTGAAATGTTTTAA
ATTTCCCTCGTTGTACTCGGGAAATTTCAAAAAATTTCAAAATTGACCTC
GAGAAATTTATCCCGAATTTCCCTTATAACCATGAGATTACTAGTACAAA
TTTTACTCTACTCTAAAATTTTTATTTTCGTCATCAGATTCGAAATGGAA
GTACAAACACGGGGAAAGTGATCGTAGCATCAAAAGAACCTTTCTGTGAG
AGCTTAACCAAAGGAACTCGTTACTCATGGTGCACTTGTGGTTTAAGCCA
CAAACAGGTAAAGAGAATGCTGTCATCTTTTTGCGATTTCTAAATGATGG
TTTTTGAGCCCAAAAGCGATGCCGTCATCGCTCCTACTCGCTCTAGTACA
GTATTTGAACAAACAAAAAATCAACATCTTATGACATAGCGCTCATTATT
CAAATTTCAAAGAGTACTCTTTTTCGTTTCAGCCATTTTGCGATGGAAGC
CACGAAGGTTCGGGAATGCGGCCACATCGTATGAAAGCAGAAGAAACTTG
TGAAGTCTTCTTTTGTGGATGTAAACAAACCAAAACACCTCCTTATTGCG
ATGGCTCCCACATGAGTGATGACGTACAGGCTTGCGTTATCGGTTCCTCT
TTATCGTGATTACTTTCACGGGTTGAAGAAATTTCGAGGTATTAAACTTT
CCTCTCTCAAAGACTCATTAAAGTAGACTTAATTAACGAAATAGTTTTAT
ATATAAGTTTCCAATTGAATATATTATACATATTTTTTAAATGATATTGT
CCTTTGTTAGTTTGCGTTTTTTATAGATGAAATGAAAATGTCTTGATAAC
GAGAAATTAAAATGGCTGAATGGTTGCTTCTTGCTCTATTGAATTTATCC
CTCTACAATCAGACTTGACCGTGGGAACTAAAGGTCTTCATTGGTACGCA
GGACATTTTTAGAATACAGCCCCTTCTCACAGACCCGATGAGTCAGTGGG
GGTAAAAATAACGGACCAAAACTCGATGGGGGATCGATATTCACATGCTT
TTTTATGGCTGGGGTTTGAATTCCTTTGTTTTCTTGCCAAAACATTTAGT
GGGGATGGAAAAAATAGAACAATATTTTGCAGCGAGGATTTGCTTTTCTG
ATTATTTTCATTGGGCTCAAAAAATAGAGTATGATTTTCCACTGGGGACA
ATATTTTGGCCAGTGGGTCTGTGAGAAGGGGGTGTTAAAATGTCATCTAG
CTGCCGAATTTCAAATCTTGTGCATTTCGCTCTAAAATTGAAACTGAGAT
ACTTACGCTCGGACAATTACCAAGAGAATCATTTGCTTTAAAGACTCTTT
CGAAAAAAAGTTACTACAATC

Coding sequence (CDS) from alignment at scaffold_118:94146..109716-

>TCONS_00046918 ID=TCONS_00046918|Name=TCONS_00046918|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_118:94146..109716- (Clytia hemisphaerica)
CCATTTTGCGATGGAAGCCACGAAGGTTCGGGAATGCGGCCACATCGTAT
GAAAGCAGAAGAAACTTGTGAAGTCTTCTTTTGTGGATGTAAACAAACCA
AAACACCTCCTTATTGCGATGGCTCCCACATGAGTGATGACGTACAGGCT
TGCGTTATCGGTTCCTCTTTATCGTGAATTCGAAATGGAAGTACAAACAC
GGGGAAAGTGATCGTAGCATCAAAAGAACCTTTCTGTGAGAGCTTAACCA
AAGGAACTCGTTACTCATGGTGCACTTGTGGTTTAAGCCACAAACAGATG
TCAACCAAATTTCTCTCCAGAAGTTTCATTTTTTCTATCGGAAGACAATG
GTGTCAGCCATTTTGCGATGGAAGCCACGAAGGTTCGGGAATGCGGCCAC
ATCGTATGAAAGCAGAAGAAACTTGTGAAGTCTTCTTTTGTGGATGTAAA
CAAACCAAAACACCTCCTTATTGCGATGGCTCCCACATGAGTGATGACGT
ACAGGCTTGCGTTATCGGTTCCTCTTTATCGTGAATTCGAAATGGAAGTA
CAAACACGGGGAAAGTGATCGTAGCATCAAAAGAACCTTTCTGTGAGAGC
TTAACCAAAGGAACTCGTTACTCATGGTGCACTTGTGGTTTAAGCCACAA
ACAGATGTCAACCAAATTTCTCTCCAGAAGTTTCATTTTTTCTATCGGAA
GACAATGGTGTCAGCCATTTTGCGATGGAAGCCACGAAGGTTCGGGAATG
CGGCCACATCGTATGAAAGCAGAAGAAACTTGTGAAGTCTTCTTTTGTGG
ATGTAAACAAACCAAAACACCTCCTTATTGCGATGGCTCCCACATGAGTG
ATGACGTACAGGCTTGCGTTATCGGTTCCTCTTTATCGTGAATTCGAAAT
GGAAGTACAAACACGGGGAAAGTGATCGTAGCATCAAAAGAACCTTTCTG
TGAGAGCTTAACCAAAGGAACTCGTTACTCATGGTGCACTTGTGGTTTAA
GCCACAAACAGATGTCAACCAAATTTCTCTCCAGAAGTTTCATTTTTTCT
ATCGGAAGACAATGGTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029933XLOC_029933Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046918-proteinTCONS_00046918-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046918-exon-scaffold_118-1575043694:109443..109716TCONS_00046918-exon-scaffold_118-1575043694:109443..109716Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1575043694:96916..96986TCONS_00046918-exon-scaffold_118-1575043694:96916..96986Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1575043694:95210..95329TCONS_00046918-exon-scaffold_118-1575043694:95210..95329Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1575043694:94829..95034TCONS_00046918-exon-scaffold_118-1575043694:94829..95034Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1575043694:94146..94690TCONS_00046918-exon-scaffold_118-1575043694:94146..94690Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1510915933:109443..109716TCONS_00046918-exon-scaffold_118-1510915933:109443..109716Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1510915933:96916..96986TCONS_00046918-exon-scaffold_118-1510915933:96916..96986Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1510915933:95210..95329TCONS_00046918-exon-scaffold_118-1510915933:95210..95329Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1510915933:94829..95034TCONS_00046918-exon-scaffold_118-1510915933:94829..95034Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1510915933:94146..94690TCONS_00046918-exon-scaffold_118-1510915933:94146..94690Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1491911889:109443..109716TCONS_00046918-exon-scaffold_118-1491911889:109443..109716Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1491911889:96916..96986TCONS_00046918-exon-scaffold_118-1491911889:96916..96986Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1491911889:95210..95329TCONS_00046918-exon-scaffold_118-1491911889:95210..95329Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1491911889:94829..95034TCONS_00046918-exon-scaffold_118-1491911889:94829..95034Clytia hemisphaericaexon
TCONS_00046918-exon-scaffold_118-1491911889:94146..94690TCONS_00046918-exon-scaffold_118-1491911889:94146..94690Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:94146..109716 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.1387	19.789	8.65624	7.88338	23.8031	26.4309	26.9053	40.1149	28.3229	25.9625	23.8435	17.9263	14.4336	13.3834	6.36172	7.08472	13.1181	11.8734	4.08221	3.56631	6.16548	4.8848	11.8358	10.43	26.97	33.5901	26.6951	23.5098	27.4094	32.6672
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018967FeS-contain_CDGSH-typ
Vocabulary: Cellular Component
TermDefinition
GO:0043231intracellular membrane-bounded organelle
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
Blast
[Close]
BLAST of TCONS_00046918 vs. Swiss-Prot (Human)
Match: CISD3 (CDGSH iron-sulfur domain-containing protein 3, mitochondrial OS=Homo sapiens GN=CISD3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.317e-22
Identity = 43/88 (48.86%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:  370 GKVIVASKEPFCESLTKGTRYSWCTCGLSHKQPFCDGSH--EGSGMRPHRMKAEETCEVFFCGCKQTKTPPYCDGSHMSDDVQACVIG 627
             + +VA K P    L  G  Y WC CG S KQPFCDGSH  + +G+ P + KA+ET  V  C CK T+ PPYCDG+H S+ VQ   +G
Sbjct:   37 ARSVVALKTPIKVELVAGKTYRWCVCGRSKKQPFCDGSHFFQRTGLSPLKFKAQETRMVALCTCKATQRPPYCDGTHRSERVQKAEVG 124
The following BLAST results are available for this feature:
BLAST of TCONS_00046918 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CISD36.317e-2248.86CDGSH iron-sulfur domain-containing protein 3, mit... [more]
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