TCONS_00046901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046901
Unique NameTCONS_00046901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046901 ID=TCONS_00046901|Name=TCONS_00046901|organism=Clytia hemisphaerica|type=transcript|length=843bp
TTCTTGTTCAGTTTATTTAGGCCTTTTGAATTGtcctgaatttttttatg
attttgggTTTCGAAAtcggcaaaatttttaaattacaggcctctaataa
aagaaaaagcgtgaaTTGCAGGCCACACCCATCAATGGCGTACACTTGCC
TGGATACCTTATTGGCCatgattttattttctgattGGATGAGATTAGGT
GATTGTTTATCATGTTACGATTGTGGTATGTCCTCTTCAAGCAAGGCGTG
CAACAACACGCAACTTCTAAAAAGTTGTTCAAATACCAACCAAATTTGCA
TCACTGCACGATATTATGAACAACTGGGCAACACTTTTAAATACGTATTT
TTCAAAGgCTGTATGAAGAAATCATTTTGTGAAAACTATTGCAATAAATT
GCCATTTGATGCTACACAATGTATGAGCAAATGCTGTCAAAAAGACAAAT
GCAATGCACTGAGCAATGAACGCTGGGTGTGGTACCAATATTTTCAATCT
GATGCGACGAGAACAGAATGCCAAAGAAACATCAAAGTAATGCTCGTGTT
TCTGTATTTACTAACTTTATTTGATTGGCTCATAACTTGAATTATAACAC
TGCTTAAACTataaatgttggaaaaaaagttaaaatgtaTACTCACGTCT
ATGAAGTGTTTACATGGAACTGTGTCTTTTCATGGCTTTGGTTTCATTCA
GTGGGGACAAACTTGACGTTACTCGGAGCATATACCAGTTCCACCTATCT
TAGTTTTTTTATCTAACAATTATTTATTGTAATAGTttctgtaaaataaa
aataaaagagttCACGATAAAAACATCCCTTCACACATTGGAA
Run BLAST on NCBI

protein sequence of TCONS_00046901-protein

>TCONS_00046901-protein ID=TCONS_00046901-protein|Name=TCONS_00046901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MILGFEIGKIFKLQASNKRKSVNCRPHPSMAYTCLDTLLAMILFSDWMRL
GDCLSCYDCGMSSSSKACNNTQLLKSCSNTNQICITARYYEQLGNTFKYV
FFKGCMKKSFCENYCNKLPFDATQCMSKCCQKDKCNALSNERWVWYQYFQ
SDATRTECQRNIKVMLVFLYLLTLFDWLIT
Run BLAST on NCBI

transcript from alignment at scaffold_118:339462..343361+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046901 ID=TCONS_00046901|Name=TCONS_00046901|organism=Clytia hemisphaerica|type=transcript|length=3900bp|location=Sequence derived from alignment at scaffold_118:339462..343361+ (Clytia hemisphaerica)
TTCTTGTTCAGTTTATTTAGGCCTTTTGAATTGtcctgaatttttttatg
attttgggTTTCGAAAtcggcaaaatttttaaattacaggcctctaataa
aagaaaaagcgtgaaTTGCAGGCCACACCCATCAATGGCGTACACTTGCC
TGGATACCTTATTGGCCatgattttattttctgattGGATGAGATTAGGT
AAGCAAataagaaaactaaaaatttttctcaagacTTTTCTAAGTTTTAC
ATTCAAGATTTACTCTGAAACCCAATGATAGCTATTACTGGTAGTCCCAT
TTAAGATTGTTAAAAAAGTACTACAGACTCGTAGATAACTGCCTGAACTC
ACTGATAAATTAAACAATTTGACTTTAAAGGCCGTGATACACTTGTCAAT
ATtaaatcaatattcaaaaactGTTACAATATATGGATCATAAATGTTAT
TGAGCTAATATTGCTGAATGTaaggtaaaaagttgaatttgaaattaTGT
TCAAATTCATGAAAGTGCAGGAAAGTGCTCTATTGTTCGATTATTGAGCG
AGAGTtgatttaaattgaaatttttcaatttttcaaatcaacaatagaaa
gaaaggaaaaacaaTTGATTTCGATTATGTAAACAAACACtttccattca
atttttctccaaaagagagagaaaatatttctcTTCTTGAACAAAGGGCA
AGTGTTCCTATTGTTTGCAAAATTACCTATAATTTTGAGCAAGTGTAAGG
GCCcaaattataatagatcaatatTCTATGATTGAATATAATTTAGACTA
TTGATAGGTGTAAGGAAGCGatcaattttagatttatatccAAATATAGT
AAcagtttttgaatatttaatATTGACAATCGATCACGGCcttaagtctg
tctcaatattaTAATTTGTAGCGGAGATAAAAAGACTGTaagttttgata
gaattcgaagtagatagcgattttgtgctcgttaaaaatataatccagaa
aggaatattattaaaaaagaaaaatctttaaaaaatgggaaaatgaagaa
aatcaacttatttagaataatgctatgatcttcatttttatatcagAGAC
TGTTGAATCTTAAAACGTCATAAATGcgtatcaaaaaatatttattcagt
caaaaaatacagctttGTTGTTAGTTTATTTAATGGTTTTTTTTAAGTCA
ATCAGTGATAAACTTTGGATTATATCTTTCGACGGaataaattttttgga
aaaactttttcacatcAAGGATGCTATAAGAtcaaggaattattatagac
actggaaaaacaactcgctgatttttgccaatttctcatgtacaagcctt
gtccgcagtaatgacattattgttcaccctccttccaccattaaCATGAT
TCTtcatagcattttaattgcatttcacatcaaaatacacttatccaatt
cccaaatgagcttttaagttctcctccgagagtcaaactcatctagttaa
ttactaactatgacgttttaaaatgcgatgaccgtgccaccacgtgccac
caaaagattttcatatcacagtgaagctatgagactcacgtctaataCAT
Gtaaatctcagctcttctcggagaaatattggaaagatattcccaattca
aaatttcgtgtcattataagcattttgtttgaatttactcgtctaatgat
gtttttctcacaccagatttcataaatgtattcgcttgatattctagcat
ttattttcaaacctttggccagcaaaagtacgcATAGAAAAAGTTAGACA
GCTctttagaaataagagtattaatcatttttcaaaatcagagtccttcg
agccgcaATGACAGTTGTCCTTCGCGGATAAAgcctgtacatcgattgtt
ttctgaaacaaaagaaagacaatacttcgctctccaccgtttcattcgat
gtttatccagagtctctataataaatccatgataAGATCAAAGAACCACT
CGTGTGTAAATTTTAGCACAATTATCGAAGAAGTcgattttccgatcttt
tttcgaattttttctttGGATCAGGTCCGGTTAGAGTGGTCACCGGCTAC
GAACTGAACAGCTATTGGGCGTGGTCTGGGCCACGAGCTAAACAGCGAGT
TGGCGAGTCTTTGGCTACGAGCTGATCAGTGAAACATGGTGGTCTGCATT
TTCTTCAATTAAATGTCCGGCCACCAACTGAACAGTGAAGAATACTGTTC
AGTTTGTAGCCAGCGACCACTCTAACCAGACCTGATCCTCTTTTTTCGTT
TCAACAAGCgctaaacaagcacaaaaccgctatctaattcgaatacTCTC
TCAGTAATATCATCCTTTCCACAGGTGATTGTTTATCATGTTACGATTGT
GGTATGTCCTCTTCAAGCAAGGCGTGCAACAACACGCAACTTCTAAAAAG
TTGTTCAAATACCAACCAAATTTGCATCACTGCACGATATTATGAACAAC
TGGGCAACACTTTTAAATACGTATTTTTCAAAGGTAACACAACTATGAAA
TCTATGCTATAATGAAAGACGTCATTAAAAGCACTATCAACTCAAGTAGC
TAATAAATTCTTATCAAGTTTACCAAAGTTTGATTCTAGACATGTCTATA
AGCGTCATGCTACGTCATTAATTacacaaaaaatgtaaaataccactgtc
attatttttctaggCTGTATGAAGAAATCATTTTGTGAAAACTATTGCAA
TAAATTGCCATTTGATGCTACACAATGTATGGTAAGTGCTTAAATGGCAC
ATAACGTCATAACGACGTCAATTGAACGTCCATAGCACCCATGTTTTGTT
ACTTAAAAATAGTTTTATTAATGCCAGTATGAGTTTTTTTGTAAGGCTCT
AGGAGGAAGAAAGGGATCTATTTCTGGGACTTGGGAacctaaaagaaaac
ttttgaattgtAATGAAATCTATAATACACTGCATTGCCTGAATATTGCG
CCAGCATGAGACACCTAGTAGCAATTGCAACTTAGTTCTTTATCTCTAAA
TATTTCGctcgaatttttttgaattttcttgaattttcttGAGCACTTAT
ATATAATTATTTCACTGTTTATCGGtgatcaaaaaaatatcagcaatctg
attggttaaaaagagtacaatatatcttgtattttacatgtaagaatata
aattgacgaaaagatgttgttgcattgtagcggtagcagcaatataacgt
cactttgctacaaaagtgccctgcgcttttttccaacacaaaaagtgcat
tttttgagtcaacgataaaccagttatcagacatttgctcgtacaatatg
gaaatatttcacttgtTCCGGATTTTTTCcgtatataaaatattgtacgg
aaaaatctcggaactcgtaaaatatttctcatattgtactcgcaactctc
cgataactattacatattgtaatatATTTCAGAGCAAATGCTGTCAAAAA
GACAAATGCAATGCACTGAGCAATGAACGCTGGGTGTGGTACCAATATTT
TCAATCTGATGCGACGAGAACAGAATGCCAAAGAAACATCAAAGTAATGC
TCGTGTTTCTGTATTTACTAACTTTATTTGATTGGCTCATAACTTGAATT
ATAACACTGCTTAAACTataaatgttggaaaaaaagttaaaatgtaTACT
CACGTCTATGAAGTGTTTACATGGAACTGTGTCTTTTCATGGCTTTGGTT
TCATTCAGTGGGGACAAACTTGACGTTACTCGGAGCATATACCAGTTCCA
CCTATCTTAGTTTTTTTATCTAACAATTATTTATTGTAATAGTttctgta
aaataaaaataaaagagttCACGATAAAAACATCCCTTCACACATTGGAA

Coding sequence (CDS) from alignment at scaffold_118:339462..343361+

>TCONS_00046901 ID=TCONS_00046901|Name=TCONS_00046901|organism=Clytia hemisphaerica|type=CDS|length=2172bp|location=Sequence derived from alignment at scaffold_118:339462..343361+ (Clytia hemisphaerica)
atgattttgggTTTCGAAAtcggcaaaatttttaaattacaggcctctaa
taaaagaaaaagcgtgaaTTGCAGGCCACACCCATCAATGGCGTACACTT
GCCTGGATACCTTATTGGCCatgattttattttctgattGGATGAGATTA
GGTGATTGTTTATCATGTTACGATTGTGGTATGTCCTCTTCAAGCAAGGC
GTGCAACAACACGCAACTTCTAAAAAGTTGTTCAAATACCAACCAAATTT
GCATCACTGCACGATATTATGAACAACTGGGCAACACTTTTAAATACGTA
TTTTTCAAAGgCTGTATGAAGAAATCATTTTGTGAAAACTATTGCAATAA
ATTGCCATTTGATGCTACACAATGTATGAGCAAATGCTGTCAAAAAGACA
AATGCAATGCACTGAGCAATGAACGCTGGGTGTGGTACCAATATTTTCAA
TCTGATGCGACGAGAACAGAATGCCAAAGAAACATCAAAGTAATGCTCGT
GTTTCTGTATTTACTAACTTTATTTGATTGGCTCATAACTTGAatgattt
tgggTTTCGAAAtcggcaaaatttttaaattacaggcctctaataaaaga
aaaagcgtgaaTTGCAGGCCACACCCATCAATGGCGTACACTTGCCTGGA
TACCTTATTGGCCatgattttattttctgattGGATGAGATTAGGTGATT
GTTTATCATGTTACGATTGTGGTATGTCCTCTTCAAGCAAGGCGTGCAAC
AACACGCAACTTCTAAAAAGTTGTTCAAATACCAACCAAATTTGCATCAC
TGCACGATATTATGAACAACTGGGCAACACTTTTAAATACGTATTTTTCA
AAGgCTGTATGAAGAAATCATTTTGTGAAAACTATTGCAATAAATTGCCA
TTTGATGCTACACAATGTATGAGCAAATGCTGTCAAAAAGACAAATGCAA
TGCACTGAGCAATGAACGCTGGGTGTGGTACCAATATTTTCAATCTGATG
CGACGAGAACAGAATGCCAAAGAAACATCAAAGTAATGCTCGTGTTTCTG
TATTTACTAACTTTATTTGATTGGCTCATAACTTGAatgattttgggTTT
CGAAAtcggcaaaatttttaaattacaggcctctaataaaagaaaaagcg
tgaaTTGCAGGCCACACCCATCAATGGCGTACACTTGCCTGGATACCTTA
TTGGCCatgattttattttctgattGGATGAGATTAGGTGATTGTTTATC
ATGTTACGATTGTGGTATGTCCTCTTCAAGCAAGGCGTGCAACAACACGC
AACTTCTAAAAAGTTGTTCAAATACCAACCAAATTTGCATCACTGCACGA
TATTATGAACAACTGGGCAACACTTTTAAATACGTATTTTTCAAAGgCTG
TATGAAGAAATCATTTTGTGAAAACTATTGCAATAAATTGCCATTTGATG
CTACACAATGTATGAGCAAATGCTGTCAAAAAGACAAATGCAATGCACTG
AGCAATGAACGCTGGGTGTGGTACCAATATTTTCAATCTGATGCGACGAG
AACAGAATGCCAAAGAAACATCAAAGTAATGCTCGTGTTTCTGTATTTAC
TAACTTTATTTGATTGGCTCATAACTTGAatgattttgggTTTCGAAAtc
ggcaaaatttttaaattacaggcctctaataaaagaaaaagcgtgaaTTG
CAGGCCACACCCATCAATGGCGTACACTTGCCTGGATACCTTATTGGCCa
tgattttattttctgattGGATGAGATTAGGTGATTGTTTATCATGTTAC
GATTGTGGTATGTCCTCTTCAAGCAAGGCGTGCAACAACACGCAACTTCT
AAAAAGTTGTTCAAATACCAACCAAATTTGCATCACTGCACGATATTATG
AACAACTGGGCAACACTTTTAAATACGTATTTTTCAAAGgCTGTATGAAG
AAATCATTTTGTGAAAACTATTGCAATAAATTGCCATTTGATGCTACACA
ATGTATGAGCAAATGCTGTCAAAAAGACAAATGCAATGCACTGAGCAATG
AACGCTGGGTGTGGTACCAATATTTTCAATCTGATGCGACGAGAACAGAA
TGCCAAAGAAACATCAAAGTAATGCTCGTGTTTCTGTATTTACTAACTTT
ATTTGATTGGCTCATAACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029927XLOC_029927Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046901-exon-scaffold_118-1491911889:339462..339659TCONS_00046901-exon-scaffold_118-1491911889:339462..339659Clytia hemisphaericaexon
TCONS_00046901-exon-scaffold_118-1510915933:339462..339659TCONS_00046901-exon-scaffold_118-1510915933:339462..339659Clytia hemisphaericaexon
TCONS_00046901-exon-scaffold_118-1575043694:339462..339659TCONS_00046901-exon-scaffold_118-1575043694:339462..339659Clytia hemisphaericaexon
TCONS_00046901-exon-scaffold_118-1491911889:341836..341994TCONS_00046901-exon-scaffold_118-1491911889:341836..341994Clytia hemisphaericaexon
TCONS_00046901-exon-scaffold_118-1510915933:341836..341994TCONS_00046901-exon-scaffold_118-1510915933:341836..341994Clytia hemisphaericaexon
TCONS_00046901-exon-scaffold_118-1575043694:341836..341994TCONS_00046901-exon-scaffold_118-1575043694:341836..341994Clytia hemisphaericaexon
TCONS_00046901-exon-scaffold_118-1491911889:342175..342242TCONS_00046901-exon-scaffold_118-1491911889:342175..342242Clytia hemisphaericaexon
TCONS_00046901-exon-scaffold_118-1510915933:342175..342242TCONS_00046901-exon-scaffold_118-1510915933:342175..342242Clytia hemisphaericaexon
TCONS_00046901-exon-scaffold_118-1575043694:342175..342242TCONS_00046901-exon-scaffold_118-1575043694:342175..342242Clytia hemisphaericaexon
TCONS_00046901-exon-scaffold_118-1491911889:342944..343361TCONS_00046901-exon-scaffold_118-1491911889:342944..343361Clytia hemisphaericaexon
TCONS_00046901-exon-scaffold_118-1510915933:342944..343361TCONS_00046901-exon-scaffold_118-1510915933:342944..343361Clytia hemisphaericaexon
TCONS_00046901-exon-scaffold_118-1575043694:342944..343361TCONS_00046901-exon-scaffold_118-1575043694:342944..343361Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046901-proteinTCONS_00046901-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_118supercontigscaffold_118:339462..343361 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0559586	0	0	0	0.0754633	0	0	0	0	0	0.0566935	0	0.46599	0.425144	0	0	1.09849	1.68376	0.0695845	0.311235	2.64453	1.97925	2.15949	2.68326	1.64105	1.66639	5.82536	6.52584	1.8123	1.01248
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016054LY6_UPA_recep-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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