TCONS_00046886 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046886
Unique Name	TCONS_00046886
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2420

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_118:70867..81563+

transcript sequence

>TCONS_00046886 ID=TCONS_00046886|Name=TCONS_00046886|organism=Clytia hemisphaerica|type=transcript|length=2420bp
ATAGGAAAGAAAGTTAATTGAATGATTTGAAATGGATTGTGACTTTGTTT
TACCTTTGAATAAAGAAGATCTTTTGAGCAATCGAGCTGCAGATGGTTAT
GGAGTTCGAAAGATATATGAACCTGCAAAGCTTGGAGAAAAACTGGAAGa
TTGTAACATTGACTACAGAAATGATGGCCCCACTGCAATTCTCAAACAAT
TTGATGTATTCTACAGTGTATTACAccatttgacACGTCTTCAAGAAGAA
ATCAAACAACAAGCATGGGAGATGGTGCTACAGAATGTTACAATACACAT
GAATTCTCTTCCAATGATTCTTGATCCAGAAGGTATGGATATTGAACTAC
GAAAAAGTCATCTAAATACAGTCAAGAtggaaatttatattttgacgCAA
TTGATTGAGGAATTTGAAAGTGAAGCTGCGAAACCTGACATGAATACCGA
TATTACAAAGAGAGGTAAAGGATCTAAGAAGAAGTCACATCAATCATGGG
ACTGGTCCAAAGAGAGGAATCAGGTGTTGAGTGTTATCAACCAATTTTTG
CAACTTGAACTCCAAAGATTGTGGGATCCACCCATTGTAGAAGAAGAATT
CGCCAAtttgTTCAGCTCCGTATGTTACAAAATGCTGGAAAATCCTGTCG
TGGTTcgtcaaaaagaagataaaGAATTGGTGATCAACATCCTTGGGCAG
CTCATCAAACGATATAAACATCAACTAGGTGCCAGTATGAAAATGATTCA
GCTGCTGCAACATTTCGAGCATCTGGTGTCGCCTCTTGCACAAGCTATCA
CCACTTTCGTCACTGATTTTGGAGCCAAAAACCTTGTCAGTGATGTCATT
AGGGAGATTGGTCGAATGGAATCGTCGGACTTGTCACGTGATACGAGTGG
CACGCGAGCTTTCTCACAGTTCTTGGTAGAATTAGCTTATAAAATACCAA
ACCAAGTGCTCCCAAACATCAGTTTGTTGATGGCTCATCTCGATGGTGAT
TCGTACACAATGCGCAATGGTGTGCTGGGTGTTTTTGGTGAGATTGTCAT
CAAGGTGTTGAGTAAGGAAGACTTGGATGAATCAATGAAGAAATCACGAG
AGAGTTTCTTGGACAAACTGGAAGAGCATATACATGACGTACATGCGTTT
GTGAGGAGCAAAGACTTGCAAATATGGCTTCGTCTATGTCAAGAAAAGgC
TATACCCATTTCAAGGCAGAGCCGAATCATCGAACTTATTTTGGGTAGAT
TATTGGACAAGTCCAGTCAAGTTCGAAAATATGCTGTCCAATTTTTGAAA
GCAAGTTTAATCGGAAACCCCTTCGCTGCAAAActaCCGATAGAACAATT
GACGTCAAGTCTTGAAAAAGAAACTGACAAATTGAAAGAGATGGACACTA
GTTCACAGAACGAAGACAACGCTCCCAGCAATGAACTTGATAGAGAATGG
AGTGAATTGGAGACAGTTTTATGGAAAGAGTTAACGAAGACGTCAGATGA
AGAAGAAGCGAGCGGAGATGAGGAGATGGAGGAAGACCGAGGAGAGGATG
AAGAAGCATTTCAAATTTATGAAGATGACGAGGATGGTTTAGATAAAGCC
TTATTGAAAATGCAAGGATTTCTGAAAGAGAAATTACACGACAAGGCGAT
CAAGATGTTGAGCAGGGTGCTTGAGGTGTGGGGAGATGTAGAGGAGTTGC
AAGTGTCTGATGGAGATGTGCAAAAGATGATGGAAAGCTCCGATGAAGTT
GAGGAGGATGAAGATGAAGAGGATTCCGAAGAAACAGAAGATAAACAATC
ACGGGagaagaaattaaagaaaaagcTGTTTCTGTTGAAGAAAGTATATT
GCTTGAATGCCAGTGGTAATGATATGGAGATTGATTTGGACGCTGtcact
caacaacaacaacccaCTGAAGAACAAATCCTCAAAAATACTCAACTTGA
ACAACAAAAAGTTCTCGTCAACTACCTCAAGGATTGTGTGAATTTCGCGC
ATCAAATGCGAAGAGCAATTCCAATCCTTTGCCAACACTTGGGCTCAAAA
ACAAACTCTGACGTTTTGGAAACCATGGACTTCTTTATTGCTGCCCATGA
GTTCGGATTGGCTCATTCTGAAGAAGGCATTCGCCGCATGGCCAACCTGG
TCTGGTCACGTGACCCCATCGTAAAGAAAGCTGTGGTCACTGCTTTCGAA
CGTTTATATTTGGACATTGCATGCGATAATCCAAGAAATAAACCAACGTT
AATTGTCAACAGTTTAACATCGCTTATAACGAGTGCAAATCTTGGTGAAT
TGACTTCCCTCGAGGAGCTGCTCGTGATACGTGTAATGCCATTCTGAaga
tcaaagaaaaacaaaagctGGGTGAAAACAAGGAGCCTTTCCGGTTACCA
ACCGAACACGGCGTATTCNC

Run BLAST on NCBI

transcript from alignment at scaffold_118:70867..81563+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046886 ID=TCONS_00046886|Name=TCONS_00046886|organism=Clytia hemisphaerica|type=transcript|length=10697bp|location=Sequence derived from alignment at scaffold_118:70867..81563+ (Clytia hemisphaerica)
ATAGGAAAGAAAGTTAATTGAATGATTTGAAATGGATTGTGACTTTGTTT
TACCTTTGAATAAAGAAGATCTTTTGAGCAATCGAGCTGCAGATGGTTAT
GGAGTTCGAAAGATATATGAACCTGCAAAGCTTGGAGAAAAACTGGAAGG
TAAAAGATGTTATTTGTAATGCTTGCAAGAGCTCTTCTCATCAATGTTGC
ATTTAAAAGCCtgattctttatttttaatctaCAAATATGGTCATTCATG
AATCATGACATttagtttttactttttatattcagaaaatgaaaaataca
tttttatgGTATCAATCAATCATTTGTCAATctaataatcttttttttta
aacatagaTTGTAACATTGACTACAGAAATGATGGCCCCACTGCAATTCT
CAAACAATTTGATGTATTCTACAGTGTATTACAGTAAGTTGAAATTCCTG
TTTGGAAAAACTGTTTCTCAATATAAATTTGAGCAAGGTCGgatgaaatt
ttaataaaaaaaactgcataAAACACAAAATATATGCAAAACTGTTATTG
TACTTCAGAAATAGAAATatgtaaagattttttttggacactgaataaat
ttttgttttcattttataattGCACTACAGGTAGTGTATAGTACACCTTT
ttattaaaatcataaaaaaagtcaaagtgGAAATGAAAATCAGCcgaaat
tctttcttttttacttttgatcTCTAATAAAAAGGTCTACAGTAgtatat
tttattatattataaaNCActgaataaatttttgttttcattttataatt
GCACTACAGGTAGTGTATAGTacacatttttattaaaatcataaaaaaag
tcaaagtgGAAATGAAAATCAGCcgaaattctttcttttttactttttga
tctCTAATAAAAAGGTCTAcagtattatattttattatattataaaGTAA
CAAActtctgttttattttttagccatttgacACGTCTTCAAGAAGAAAT
CAAACAACAAGCATGGGAGATGGTGCTACAGAGTATGTTGACCTTGTTTT
TAGAGATTTAGATAAAGTTAGAATAGGACACAACATTATTATGTTCATTC
ATACTAACTAGCTCTTTCAATTATTATTTAGATGTTACAATACACATGAA
TTCTCTTCCAATGATTCTTGATCCAGAAGGTATGGATATTGAACTACGAA
AAAGTCATCTAAATACAGTCAAGGTAATAATAATTAGATTTCAAGGCAGA
aagtatttttaaagacattctATAGTAACACAAAAAACGGTTGTTTGAAG
AAGAATAAGTGAataaaaagacaatttaaattTTGCTTTATAAACATACA
TTAATTTCTGGCTGAGGCTCATTATGCTTAGAAAATCTTCATGTTCAACT
TCAAATTGCTCAGCTTGGTCTTGGTCTTATGCTTACCaaagttttctcaa
aatatcctcgattttgactgattttcattttcacttttttaaatttactt
tttttatgatttcatCCACTCTATTAGAGCGTAGTGTAGTGAtatagtgg
ttatcatccttgactcccGCCATCGCATGTGAGGCctgagttcgataccc
accatGTCtgtacgattcacttggcaagtgaatataccttcgCCTGGGTC
CCCCTATACCATCCACCTGGtacactctgatacaagagtgtgggtagatt
aaACAGATTTTGTGATGTGCTGTGGCACAATCATAAGGTTCGGCCTCGCA
TGAGCATtgctctcccagtgtcgttcgagtgtcatggtatacgccatggc
ttgaCAGCTCACGcctgtcagcgccgtgattcccACTCAAGCGTCGAACC
CATCCCAAATGTATTtggagggctcatatctataTCTATCAactctaccg
ggtgacccacgaaaaagttcggacggttTTCGTTGGCTAGGGTctgaaat
aaaagtaatataaactcaatcttttttttaaaagatagaggatgctctaa
cttaaactttgagcTATTACTTCCGAAAACTTTTTCGTGGATCACCTGGT
ACTAATATGTTGAACAGTGAAAAAggatgcggctattatattttgatttt
cccCTACATGTTTCGGCCTCGGTCCGTTTTCAAGGGAATCCACTCAACTA
ATACAAAGGTGTACAGTATTttatttaaagctattttaattttcaaaata
ttcgttGTCTTCCTGTATAATTGATccctttttcaaaacaaatcatgAAT
CACCACAATTTATTTGCATTTTATTCTCTTTGGAATTTCAGAtggaaatt
tatattttgacgCAATTGATTGAGGAATTTGAAAGTGAAGCTGCGAAACC
TGACATGAATACCGATATTACAAAGGTGATTTTTCTCTTTGTTCTCAACT
TCAATGTGtgtattaattatttttgaggtTCTGTATATTCTTTGGTACCT
TTCGTTTTGACCAAATGAGATTAAAATCTTAAAACTCTGTAAATGtgtaa
tattttaaaagatGATGCATAAATACTGCCCGTCAGTGCCCGTAGGGTCA
ATATAATATGCATGGTGATGTTTTTTCATattatttgatttgtttttttg
ttagtttggggggggggcattgTTTGCATGTAAACAATAACCTCTACTAA
ATCTCTTTAGgaaattgctttttaaaatgttcaaaCCAATCAGATTTTAC
TCTTTACTTTAGAGAGGTAAAGGATCTAAGAAGAAGTCACATCAATCATG
GGACTGGTCCAAAGAGAGGAATCAGGTGTTGAGTGTTATCAACCAATTTT
TGCAACTTGAACTCCAAAGATTGTGGGATCCACCCATTGTAGAAGAAGAA
TTCGCCAAGTAatttgtttttcactttttcttctacatgttctttttgat
ttcatttcttAAGGTTTCGTTTAAAGAAACGTTTTATGCTATAAGGCTCT
GTAATGACACAACCATTATctgcttattaaaaaattttattaacATATGA
TTACAAATATATAGTTGGACATAAAATATTGATGTTGAATATCCGGAATA
CCttctaatttctttttcagtttgTTCAGCTCCGTATGTTACAAAATGCT
GGAAAATCCTGTCGTGGTTcgtcaaaaagaagataaaGAATTGGTGATCA
ACATCCTTGGGCAGCTCATCAAACGATATAAACATCAACTAGGTGAGAGA
CAACATTAAAATAATTGTGCATCCAGTACCTGCCAGTACATCTATTTTAG
GACATTTCGTCTACTTCCTACCAGAGTAGGTTGatgtttatttttcactt
tctccAGTGTTCCTCAAgtacattttgggcattatttAAGTGCTGATTCC
AAAAATTATGCTTATTTTGGGCTCGAATTTAATATGGATCATTTTACCTT
TTGCACTGAATGCAATACTCTTGAacatttgaacaatttttgacaaagtg
GTTTTTACAAACGTTATGTGCCTTtaattaaaatattctttaattTTTGT
GCATCTTGTAACTTCTTAAGtgtatttttatgtatttttgatGAGAAACG
TAGTTAAAGAGGGCAAAAACTATGAAATCAGAAGTTTTTCTCACTTTTAG
TTTGCATTTTAACCATTTCTTACATCCCAGGGATATATTTAAGGTAAATT
CGCTGGATTCTAGGTTTAGGATTCAAAGATTCAGATTCGGATTCAGGATT
Cgaaaaaagttttgtaaaaaaaattgaaagaagatattgacttcaaacca
aaagatcttgaaagattacATAACATAAAGCAAATCTTAAGAAAAACCGT
TATCAATACGGGTAAGGCCTTGATGCTAATTTGGGAATTTCcccttttta
ggattcaaattgCCAGCATATTGCACACTTTGACTGGTTCCCAGTCCCCT
CATTGTATTTGGATCAAATTTTAGACACCGGATCTTATGGACTAGGCGTT
CTAGAAACTTGGGAAATCAATTTTTAACGATCCCAAACCAAAAACGAATG
CAAGGTTACATGAATTCACTAAATTTTCATATTgcaaaagtctttttttc
tgcTAAGTTTTACGAAGATcacaaattgtaaaaaaaactccctttctctg
ttttttttttcaagttcttgGAATTATTTATAGCACCAGAAATGGTATGA
ACAATGTATAAACAAATTGAAACCAAAAAAAGACGCTTGAATCCCAATCC
TGCAATCCAGCGAATCTATGTATATTTAACCCTAATTAGAGGACTCGTTT
CTTAAAAAGAGCGCTAAGATGATATTCCTACACATTTATAATAATCACTA
ATTCACGCACACTTCGCACAGCCTAGTGAGCAAAAATTAATGGGATTAAG
GTAACATTTTAAGCCATTTTGATTTCAGGTGCCAGTATGAAAATGATTCA
GCTGCTGCAACATTTCGAGCATCTGGTGTCGCCTCTTGCACAAGCTATCA
CCACTTTCGTCACTGATTTTGGAGCCAAAAACCTTGTCAGTGATGTCATT
AGGTAGGGTTTATTACACAAAGGCACCGGAcgaatattttattttgttgt
tgttcttACTTANCTTTGTAACTGATTTTGGAGCCAAAAACCTTGTCAGT
GATGTCATTAGGTAGGGTTTATTATACAAAGGTACCGGACgaatattatt
ttgttgttgttcttACTTactattctttgtatttttctgtACTTTTTTCT
TAGGGAGATTGGTCGAATGGAATCGTCGGACTTGTCACGTGATACGAGTG
GCACGCGAGCTTTCTCACAGTTCTTGGTAGAATTAGCTTATAAAATACCA
AACCAAGTGCTCCCAAACATCAGTTTGTTGATGGCTCATCTCGATGGTGA
TGTAAGTgttgtgatttattttttcaactgGCTTATATTTTGTAAAATGT
CAATATAGGGGTTAATTGATGGCCTGATNCCCACAACTCCCCTTTCATTA
TTTCTTAGAAAGGTCTATACATTTAGAGctacacaaaatcaaaaattagc
TAGCTCTAGATGACAATGTGACAACTAAAGAgtaatttctttattcttta
tcTCTTTAGTCGTACACAATGCGCAATGGTGTGCTGGGTGTTTTTGGTGA
GATTGTCATCAAGGTGTTGAGTAAAGAAGACTTGGATGAATCAATGAAGA
AATCACGAGAGAGTTTCTTGGACAAACTAGAAGTAAATAAATACATGTTT
TTCAGAACTATTGTTCTGAATTGttctgaaccaattgaaccaattTTGCT
CTCTTTCAACTTAATTTAATGCCCTTTTGTAACATANgttactttcagaa
agtgctcgaaaacgttaaaattgAACTAtcaaatctttattttaaatttg
gcaatcgcaatagcctttacatgattaagagcatttttgaGTAACTTTag
cacataaattttgaaaatgaagggtCGAATAGGttttaaatcttcatcaa
aatcaatttaatttatttttaccgaaattttcctcagatatTGGTtttag
actggataaagtccatgtaaggctggatctacctcgaaacccatatttga
tgtatttttatgaattttatcagatttttttggcctttttcgacgaattt
ccttcttttcattgaaattcaaccttcctttatataacaaaaggtcattt
agacagctaattatcatttttaatgactgaaacgaaaatgcTGATGTATC
ATGTAATTATGCTTCTGTTTAATTTGATAGGTCGATTTTTAACGTTTTTG
AGCACTTTCCGAAAGTAACTTTTTTATTTAATTGAGGATGACTTTTGATC
TAATGAATCGAATTTAATAAATGACCCATCAAAATTTAAGTTTATCTTTC
TTCTTTCCAATGAAAAAGTATTGGTTATTTTTAAATTTTTAGACTTTGAG
AAAATCAGTTtcaaagagagaaacttttttgtggcgcacccggtatttat
ATCAAATCCCTTTGGATTAATCCTCTATTTACTGTACTTTATGTATTCCT
TAAAACTTTAATAGTTCAGCCTATTCTGCTTAATTAgaattaaataaatt
ttaattgGTCAATGAATTGATTGAGAAATGAAATAAACTCTGCTGGAAAT
TGTTCTTACATTATTTTTTaccctttctttttaaatatttaccaTACCAA
TGTGAAATCTGATATCTGAGCCATTTCCATTTCTCGCCACAACTCCCCTT
TCATTATTTCTTAGAAAGTCTCTATACATTTAGAGctacacaaaatcaaa
aattagcTAGCTCTAGATGACAATGTGACAATTAAAGAGTTTGTCTCTCC
TAAAGACCTTTCCTGAAGAgtaatttctttattctttatcTCTTTAGTCG
TACACAATGCGCAATGGTGTGCTGGGTGTTTTTGGTGAGATTGTCATCAA
GGTGTTGAGTAAGGAAGACTTGGATGAATCAATGAAGAAATCACGAGAGA
GTTTCTTGGACAAACTGGAAGTAAACGAATACATGTTTTTCAGAACTATT
GttctgaaccaattgaaccaattTTGCTCTCTTTCAACTTAATTTAATGC
CCTTTTGTAACGTATCCTTCTCCGATCTTCAATTGTTTTAGGAGCATATA
CATGACGTACATGCGTTTGTGAGGAGCAAAGACTTGCAAATATGGCTTCG
TCTATGTCAAGAAAAGGTACTCATTTTTGTTGCATACATGCAATGTAGTC
AACGAAATATCACAGAGCTGCTACGTCTGCCAGAAATGTCTGGAATTAGG
TAAAGGTATGGAAATGTCTGGAAAGTCTGGAAAAAGTATTCATCAGGCAA
GACTTTCAGATGGACGTTAcggaaaaattgaaaaccttCCTAGTGGATTA
AATCTCTGAAAAATATACCCaagatttttgacattttcaggtGGCTTTTG
AAACTAAGAGTCTGGAATTTTCAGCTTGGTAAACCTGTAGCAATCCTGTA
TAAGTATTTTATTCAACTCGATACGATGGCTAAGAGTTTATTTAATGAAA
ggcaatttttctttactttaggCTATACCCATTTCAAGGCAGAGCCGAAT
CATCGAACTTATTTTGGGTAGATTATTGGACAAGTCCAGTCAAGTTCGAA
AATATGCTGTCCAATTTTTGAAAGCAAGTTTAATCGGAAACCCCTTCGCT
GCAAAAGTATGTATAATTGTTTCAGCAGGTTTAATATGTTTATGGTTTTT
TTGTTTGCAAAACTTATTGTTACTCTAATTTAcaaacataactttttttg
tttcagctaCCGATAGAACAATTGACGTCAAGTCTTGAAAAAGAAACTGA
CAAATTGAAAGAGATGGACACTAGTTCACAGAACGAAGACAACGCTCCCA
GCAATGGTactcttattttttttgtacTGGGTGTTTCAAAAGAAAGTGTT
CAAGtttgaaataaataatattGTGAGAAAACTAAATAATGCTATAAATC
TAAACTTCGCcatcagaaagaggaaaggctaacttaaattttgagctatc
atacttgaaaatttgcttaacgtattcaaaagttataaagaaAACTCGAA
AAAGcgtcatttttgagaaaaaaagaggggatggattttttttctctttt
tcttttgtagAAGAAAATAGcgtgtttttgtgtttttcttgaatttgatc
ccctttttttcacaaaaatgatgctttttcgaaagagaattttttcgaat
tttcttcataacttttgaacacgttaagcaaattttaaattatgatagct
caaaatttaagttactcttttcctctttctgatggggaaaagtttagatt
tatagcatttttagttttctcacaaCCTCACTTTTTAAACACCCGGTAGC
TTTTGTGGCctgctttttagaaaaataacatGAAATGCCAGATTGACATT
GGTTCGGaaacctttttctaattttacttTGTGACGATTTTCAAAACATA
ATCATATTGTTCTTTCAATATAGTTTAGGTGGTCGACTCATGTAAACTTT
GTCGACACAGGCTGTAAAAGATTTTCTACACGTTGTTGTtgataaaagat
ttttgttttaaCCAAGGTACTATAAATGATATTTGACATGTATTCGCTAA
GCTTTTGTTCCCACTACAGAACTTGATAGAGAATGGAGTGAATTGGAGAC
AGTTTTATGGAAAGAGTTAACGAAGACGTCAGATGAAGAAGAAGCGAGCG
GAGATGAGGAGATGGAGGAAGACCGAGGAGAGGATGAAGAAGCATTTCAA
ATTTATGAAGATGACGAGGATGGTTTAGATAAGTGCGTCTTCTGTCATCC
TATCTTAAGGCTGTCGGTTTTCCCGCTCTATATACTTTGTTATTGTCTCC
ACTGTTCATCTCGCGGCCTCTCAGGATTCTGTAAGCTTGCTAGGTATCAA
ATAGGCTTAATTTGAATTCAGCATTAGAAAAAGATTTCTCCTAAAAAGTA
taatgaaatggaaaaaagGTTCAATCATTCGTTTGACTCGActcgttttc
attttcattacaGAGCCTTATTGAAAATGCAAGGATTTCTGAAAGAGAAA
TTACACGACAAGGCGATCAAGATGTTGAGCAGGGTGCTTGAGGTGTGGGG
AGATGTAGAGGAGTTGCAAGTGTCTGATGGAGATGTGCAAAAGATGATGG
AAAGCTCCGATGAAGTTGAGGAGGATGAAGATGAAGAGGATTCCGAAGAA
ACAGAAGATAAACAATCACGGTATAAATGGTGATTGGCTGTTTAAGTGGT
TACATTCATGGTGTACGCAGGAATTCCCACCTATACCTCTAATCTAGATC
TTGAACGTTCTGTTTTGTGTACTACGAAATGGAATGTAGTCATAGTATAG
CTCAGCATTCAGGATGTGATAAAGCTAAAAAATCTTCGATTCCCTTACAA
CGGACGCGTTTGGGAACTGAGATGCAGATACTCGATATTCCTTCTCTCGG
ATGCAAATACTGTTTGTTCTTCATGCTCTGATATCTTCTTACTTTTAAGG
GagaagaaattaaagaaaaagcTGTTTCTGTTGAAGAAAGTATATTGCTG
TAAGTTTCTTCTATTTgatgatgtaaccaacaaacaGTAAGCTCACGCTT
ATTCCAACttctattattattattcaaagctcttaaaaatactttcttca
ATTTGAATCTGTCTGTGATTCGAACAAAGAAGATTTCCCGTTCTCAACGT
TTTCTCCGTAAAGAGGAGGCGCACTCCCTTGATTTAATGGACTTATccca
aaacgcttaaaaaacgtttttaaatCCTCTATGAAACAAAACGTTCAATT
CACTACTAAATAGTCTCTTTTCCCTTTGAATGATCTAAAACCTCTATTTG
GTTTCGAATGAAGTGAAGCTATAAGATTTCTGTTTCTTTTGAATGTATGT
AGTGAATGCCAGTGGTAATGATATGGAGATTGATTTGGACGCTGtcactc
aacaacaacaacccaCTGAAGAACAAATCCTCAAAAATACTCAACTTGAA
CAACAAAAAGTTCTCGTCAACTACCTCAAGGTTGATCATTTTTAGTTCCA
ATAAGTGCTTGTGCGACTGGTTACGAATTATTTTTTATATGCGAATTAAA
ACAAAGTGGACACTGAAAATTTTCTAACTGGAAATTATTTCGCTTTAAAT
ATTACAAAGTCTATGACTTTGGGTTGTGTGTAAAATATTCTGAAAGTAAA
GCTCTCCTTCCTTATCCCACGAACAGGATTGTGTGAATTTCGCGCATCAA
ATGCGAAGAGCAATTCCAATCCTTTGCCAACACTTGGGCTCAAAAACAAA
CTCTGACGTTTTGGAAACCATGGACTTCTTTATTGCTGCCCATGAGTTCG
GATTGGCTCATTCTGAAGAAGGCATTCGCCGCATGGCCAACCTGGTCTGG
TCACGTGACCCCATCGTAAAGAAAGCTGTGGTCACTGCTTTCGAACGTTT
ATATTTGGACATTGCATGCGATAATCCAAGGTTTGTAATTGTTTTTGTCT
TGTTTTCTGCTAATGAAGGTTACATTTTCCACGAAACTTAACATTTCCAT
GGTATTTGCAAAGCATTTGTTGGAATTATATCTTAGAAAGGTGTCGTCTC
TCGCATTTCCATGTTTACACACTTAACTATTTTATCTTTCTACTTTAGAA
ATAAACCAACGTTAATTGTCAACAGTTTAACATCGCTTATAACGAGTGCA
AATCTTGGTGAATTGACTTCCCTCGAGGAGCTGGTATTTATTTTACCATT
GTTAATTTTGAACCTATTTTGAACGTAGCATATACTGTTTTTGAGAACTC
AAAATTCCCATTTGCCAAGATACCATTCATAACATTAATATGGTATCGTC
AGTTTCTGAAAGCTATGTTTCTTATTTCAGCTATGCGAACTGATGAAACA
AGACTTGATTCCTCAAAATGTCGTCCAGTTGTTATGGCAACGTTTTGCAT
TGAAACTACCGCAAACAACAGAGAAGGAACAGCGCGGTGCTTTGAACATT
CTTTCCATGGTAGCAGGCGCTGAAAAAGACATCATTAAATCCAACTTGAG
CGTCCTTGTTGAACACGGTCTCAAATATAAATCAAATTTCCTTCTAGCTC
GTGATACGTGTAATGCCATTCTGAagatcaaagaaaaacaaaagctGGGT
GAAAACAAGGAGCCTTTCCGGTTACCAACCGAACACGGCGTATTCNC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029915	XLOC_029915	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_118	supercontig	scaffold_118:70867..81563 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	10.2709	6.88599	1.61118	4.43294	7.50246	11.1696	4.89974	6.14888	3.15239	3.32186	0	0.000150868	0	0	0	0	0	5.90122e-10	0	0	4.90561	5.09942	0	0	0	0

Blast

[Close]

BLAST of TCONS_00046886 vs. Swiss-Prot (Human)
Match: CND1 (Condensin complex subunit 1 OS=Homo sapiens GN=NCAPD2 PE=1 SV=3)

HSP 1 Score: 367.851 bits (943), Expect = 1.607e-109
Identity = 188/478 (39.33%), Postives = 302/478 (63.18%), Query Frame = 2

Query:   41 DFVLPLNKEDLLSNRAADGYGVRKIYEPAKLGEKLEDCNIDYRNDGPTAILKQFDVFYSVLHHLTRLQEEIKQQAWEMVLQNVTIHMNSLPMILDPEGMDIELRKSHLNTVKMEIYILTQLIEEFESEAAKPDM-NTDITKRGKGSKKKSHQSWDWSKERNQVLSVINQFLQLELQRLWDPPIVEEEFANLFSSVCYKMLENPVVVRQKE--DKELVINILGQLIKRYKHQLGASMKMIQLLQHFEHLVSPLAQAITTFVTDFGAKNLVSDVIREIGRMESSDLSRDTSGTRAFSQFLVELAYKIPNQVLPNISLLMAHLDGDSYTMRNGVLGVFGEIVIKVLSKEDLDESMKKSRESFLDKLEEHIHDVHAFVRSKDLQIWLRLCQEKAIPISRQSRIIELILGRLLDKSSQVRKYAVQFLKASLIGNPFAAKLPIEQLTSSLEKETDKLKEMDTSSQNEDNAPSNELD--REWSEL 1459
            +F LPL+ E+LL +   + Y V+++     L  +L      +R  GP A+L+ FD  YS+LHH   +   +K+   + +++ V+ H   LP ILD   +    R +HLN +KM  Y L +L+E FE+ A++ ++ + D+  +GK ++ K+   +DW +ER  +L ++ Q LQL+++ LW+  I+EEEF +L +  CY++LENP +  QK    +E + ++LG  + RY H L A++K+IQ+LQHFEHL   L  A++ + TD+G K++V +++REIG+    +LSRD SGT+ F+ FL ELA ++P  ++ ++ +L+ HLDG++Y MRN VL    E+V++VLS + L+ + + +R+ FLD L+ H HDV++FVRS+ LQ++ R+ Q+KA+P++R   ++ L +GRL DKS  V K A+Q L + L  NPF+ KL    L   L+KET KL+EM   +Q    A S  LD   EW  +
Sbjct:    7 EFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHFDTIYSILHHFRSIDPGLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMNCYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLDIRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSATVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGFAAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARDTRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLVCKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEM--RAQRRTAAASAVLDPEEEWEAM 482

HSP 2 Score: 96.2857 bits (238), Expect = 3.423e-20
Identity = 45/130 (34.62%), Postives = 84/130 (64.62%), Query Frame = 2

Query: 1937 NTQLEQQKVLVNYLKDCVNFAHQMRRAIPILCQHLGSKTNSDVLETMDFFIAAHEFGLAHSEEGIRRMANLVWSRDPIVKKAVVTAFERLYLDIACDNPRNKPTLIVNSLTSLITSANLGELTSLEELLV 2326
            N +L +Q++LV YL+D  +F+ ++  AI I+ + +   T + V E ++FF+   +FG+  +  G+RRM  L+WS++P V++AV+ A+ +LYL+   D+ R K   ++ +L+ L+  A++G +  LEE+L 
Sbjct:  611 NDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFFVMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNLSLLLVDASVGTIQCLEEILC 740

The following BLAST results are available for this feature:

BLAST of TCONS_00046886 vs. Swiss-Prot (Human)

BLAST of TCONS_00046886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CND1	1.607e-109	39.33	Condensin complex subunit 1 OS=Homo sapiens GN=NCA...	[more]

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TCONS_00046886 (transcript) - C. hemisphaerica