TCONS_00046867 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046867
Unique NameTCONS_00046867
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length203

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046867 ID=TCONS_00046867|Name=TCONS_00046867|organism=Clytia hemisphaerica|type=transcript|length=203bp
GGCCTTTTCTCTGCAAGATGGTAAGGGTAGCAAAGTAGATGTTACATCTT
CTTTGTTCAACAACGAAGATGTTCACGGTTTTTCGTTCTTGAGCTGTTTT
AGCCtggattctagaaaatgcaggtccacatgtttactgcaggttgcGGG
TCAAAACCCGTTCGTTCGTCGCGTtgatttatctttgatacttaacctcc
cta
Run BLAST on NCBI

transcript from alignment at scaffold_117:470466..470668

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046867 ID=TCONS_00046867|Name=TCONS_00046867|organism=Clytia hemisphaerica|type=transcript|length=203bp|location=Sequence derived from alignment at scaffold_117:470466..470668 (Clytia hemisphaerica)
tagggaggttaagtatcaaagataaatcaACGCGACGAACGAACGGGTTT
TGACCCgcaacctgcagtaaacatgtggacctgcattttctagaatccaG
GCTAAAACAGCTCAAGAACGAAAAACCGTGAACATCTTCGTTGTTGAACA
AAGAAGATGTAACATCTACTTTGCTACCCTTACCATCTTGCAGAGAAAAG
GCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029911XLOC_029911Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046867-exon-scaffold_117-1491911889:470466..470668TCONS_00046867-exon-scaffold_117-1491911889:470466..470668Clytia hemisphaericaexon
TCONS_00046867-exon-scaffold_117-1510915933:470466..470668TCONS_00046867-exon-scaffold_117-1510915933:470466..470668Clytia hemisphaericaexon
TCONS_00046867-exon-scaffold_117-1575043694:470466..470668TCONS_00046867-exon-scaffold_117-1575043694:470466..470668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:470466..470668 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.59639	0	0	5.3051	4.30564	11.9083	10.262	3.84288	2.69049	3.33261	0	2.12637	11.6788	4.41037	5.43889	8.75514	3.59521	4.91329	1.697	10.6547	0	0	0	1.66409	11.9978	4.58903	2.18896	4.67224	12.4031	9.02625
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046867 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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