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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046843 ID=TCONS_00046843|Name=TCONS_00046843|organism=Clytia hemisphaerica|type=transcript|length=1123bp
GTTACATAAGATTCAACTGAAATGTATGTTGTACGTCATTATACGCTATG
ATTAACGTCACGTAAACATAATATGTCTAGTACCACTTGACAGGTGTCAa
gtttaatttgttttttttcgctaTCTGAGTACGTCAACACTAATAATGGG
GACTGAGGTCATCACTTTCCCaaactttttattaaaaaggccaatttctc
aaaacttttaTATACACCATATTTTGACATAATCCTATCAGTCGacataa
aatatttgaaaatatcatTTCTCCGTCAAGGAGCTGTATTGAGGTTAATT
ATCAGTATATAACTTGTAAATACAAACGGCAAATGAAAAAGGCTACAATC
CTGGGCATAATTATTTGCCTCCCGCCCTCCCATATCTTCAGAGATGTGGA
TGTTGATGTGGAGTCGGTGGAAGTTGCAATATTCCTCCCATTGACAGTGG
AGAAAGGGGGGACTCACCAGTGGGAAATACCGCGATTGTAGTGAAAATCT
GTGAGGCCATTGACAAAACTCACTTTCCTCTTAAACACACAAATACGACA
TAATTTTTACGATCTTGTAAAAGATAATACATTTTATTTAAGTCAAAGTT
CAAACGTCAAAATGACGGGAAAAGAATCTTTTACAAATCTCCTAAAAGTT
TTAAAGGTTGATGGGAGTTTAAATGCTTAATTTTCGTCGGTATTAAAACC
ACCATCAAACCACTGTTTCGACATGGTTCACATTATCAATAACGTAGCAA
CCAATAACATTAACAAAGGGATAGTTTGGTGCATAACATTCATTATCATA
GCTATCCCCATTACAAAATTCTTCAGTGCAGAAGGCTAGCCTCCCTTTCC
AATTCTTTACCCCTTGTTTCCATGAAAGATAGTGGCGATCGTGGCACGTC
AGATTGATCGATCGGCATGATTTGTCTTCTAAAGCAACTTTGAAATTTCC
GAAAGGTACCCCGCTTTTGTTTGCTTTGCAGTCTTCATCTGTTTTGAAAC
ACTGGCATTCCCAGTTAAGCATGAGCTGGCTTAAACATAATGGTGCTATC
AGCAGTATGACTAAACTTTTTAACATCTTGATGGGGCTGTGTGTCCAATC
TCTCTCTTGACTGCGACATAAAC Run BLAST on NCBI protein sequence of TCONS_00046843-protein >TCONS_00046843-protein ID=TCONS_00046843-protein|Name=TCONS_00046843-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
LCRSQERDWTHSPIKMLKSLVILLIAPLCLSQLMLNWECQCFKTDEDCKA
NKSGVPFGNFKVALEDKSCRSINLTCHDRHYLSWKQGVKNWKGRLAFCTE
EFCNGDSYDNECYAPNYPFVNVIGCYVIDNVNHVETVV Run BLAST on NCBI transcript from alignment at scaffold_117:238379..239501 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046843 ID=TCONS_00046843|Name=TCONS_00046843|organism=Clytia hemisphaerica|type=transcript|length=1123bp|location=Sequence derived from alignment at scaffold_117:238379..239501 (Clytia hemisphaerica)
GTTTATGTCGCAGTCAAGAGAGAGATTGGACACACAGCCCCATCAAGATG
TTAAAAAGTTTAGTCATACTGCTGATAGCACCATTATGTTTAAGCCAGCT
CATGCTTAACTGGGAATGCCAGTGTTTCAAAACAGATGAAGACTGCAAAG
CAAACAAAAGCGGGGTACCTTTCGGAAATTTCAAAGTTGCTTTAGAAGAC
AAATCATGCCGATCGATCAATCTGACGTGCCACGATCGCCACTATCTTTC
ATGGAAACAAGGGGTAAAGAATTGGAAAGGGAGGCTAGCCTTCTGCACTG
AAGAATTTTGTAATGGGGATAGCTATGATAATGAATGTTATGCACCAAAC
TATCCCTTTGTTAATGTTATTGGTTGCTACGTTATTGATAATGTGAACCA
TGTCGAAACAGTGGTTTGATGGTGGTTTTAATACCGACGAAAATTAAGCA
TTTAAACTCCCATCAACCTTTAAAACTTTTAGGAGATTTGTAAAAGATTC
TTTTCCCGTCATTTTGACGTTTGAACTTTGACTTAAATAAAATGTATTAT
CTTTTACAAGATCGTAAAAATTATGTCGTATTTGTGTGTTTAAGAGGAAA
GTGAGTTTTGTCAATGGCCTCACAGATTTTCACTACAATCGCGGTATTTC
CCACTGGTGAGTCCCCCCTTTCTCCACTGTCAATGGGAGGAATATTGCAA
CTTCCACCGACTCCACATCAACATCCACATCTCTGAAGATATGGGAGGGC
GGGAGGCAAATAATTATGCCCAGGATTGTAGCCTTTTTCATTTGCCGTTT
GTATTTACAAGTTATATACTGATAATTAACCTCAATACAGCTCCTTGACG
GAGAAatgatattttcaaatattttatgtCGACTGATAGGATTATGTCAA
AATATGGTGTATAtaaaagttttgagaaattggcctttttaataaaaagt
ttGGGAAAGTGATGACCTCAGTCCCCATTATTAGTGTTGACGTACTCAGA
tagcgaaaaaaaacaaattaaactTGACACCTGTCAAGTGGTACTAGACA
TATTATGTTTACGTGACGTTAATCATAGCGTATAATGACGTACAACATAC
ATTTCAGTTGAATCTTATGTAAC Coding sequence (CDS) from alignment at scaffold_117:238379..239501 >TCONS_00046843 ID=TCONS_00046843|Name=TCONS_00046843|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_117:238379..239501 (Clytia hemisphaerica)
TTATGTCGCAGTCAAGAGAGAGATTGGACACACAGCCCCATCAAGATGTT
AAAAAGTTTAGTCATACTGCTGATAGCACCATTATGTTTAAGCCAGCTCA
TGCTTAACTGGGAATGCCAGTGTTTCAAAACAGATGAAGACTGCAAAGCA
AACAAAAGCGGGGTACCTTTCGGAAATTTCAAAGTTGCTTTAGAAGACAA
ATCATGCCGATCGATCAATCTGACGTGCCACGATCGCCACTATCTTTCAT
GGAAACAAGGGGTAAAGAATTGGAAAGGGAGGCTAGCCTTCTGCACTGAA
GAATTTTGTAATGGGGATAGCTATGATAATGAATGTTATGCACCAAACTA
TCCCTTTGTTAATGTTATTGGTTGCTACGTTATTGATAATGTGAACCATG
TCGAAACAGTGGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046843-exon-scaffold_117-1491911889:238379..239501 | TCONS_00046843-exon-scaffold_117-1491911889:238379..239501 | Clytia hemisphaerica | exon |
| TCONS_00046843-exon-scaffold_117-1510915933:238379..239501 | TCONS_00046843-exon-scaffold_117-1510915933:238379..239501 | Clytia hemisphaerica | exon |
| TCONS_00046843-exon-scaffold_117-1575043694:238379..239501 | TCONS_00046843-exon-scaffold_117-1575043694:238379..239501 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:238379..239501 . |
Blast
The following BLAST results are available for this feature:
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