TCONS_00046839 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046839
Unique NameTCONS_00046839
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length643

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046839 ID=TCONS_00046839|Name=TCONS_00046839|organism=Clytia hemisphaerica|type=transcript|length=643bp
AAAGCTTCGAGTTTGAATAATCATAAGCAATTCGATTTAATAAACTCTCT
AAGACTAGAATGGCTAAAGGAAAAACCTTTCTTATAATTGCTTTGATTAT
CACCGGATTTTATGTAAGTCGAACAGAATTTCACTTTAAATTCGAAGCGT
GGACAACAAAACCAGCGCAAACACACAGAAAAGGAACAAAATCAACTTTA
CCATACCTCATTTTGCTATACACACCATATTTTGGTGGCAACTGGGAAAG
CAAATATCCGACAGGTATCAGTACGACAGATTGTAACGTACGAAAGCAAT
GCGAGTTCACTACCCAACACGAACGCATACATTCTAGCGACATTGTTCTT
TTTCACGGTAACGATTTACTAGCACCTCAAGATATGCAGAAAATACCACG
AAATCCACAACAAATATGGCTATTCATGACACAAGAAAACCCTTTTACAG
TTAATACTGGCAAATATAGACTTGGTGATTATGACAATCTTTTTAATTGG
ACTGCCACTTACTATCACAAGTCCGAAATCATCACACcatattatgacgt
cattgaacGAAAACATCAAATCGAGGCTGGGCTGATTGAAAAAGAGGTTG
GGAATAAGAGTAACTTAGTTTTTTCTGTGATGAGTAATTGTGT
Run BLAST on NCBI

protein sequence of TCONS_00046839-protein

>TCONS_00046839-protein ID=TCONS_00046839-protein|Name=TCONS_00046839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MAKGKTFLIIALIITGFYVSRTEFHFKFEAWTTKPAQTHRKGTKSTLPYL
ILLYTPYFGGNWESKYPTGISTTDCNVRKQCEFTTQHERIHSSDIVLFHG
NDLLAPQDMQKIPRNPQQIWLFMTQENPFTVNTGKYRLGDYDNLFNWTAT
YYHKSEIITPYYDVIERKHQIEAGLIEKEVGNKSNLVFSVMSNC
Run BLAST on NCBI

transcript from alignment at scaffold_117:151379..152021

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046839 ID=TCONS_00046839|Name=TCONS_00046839|organism=Clytia hemisphaerica|type=transcript|length=643bp|location=Sequence derived from alignment at scaffold_117:151379..152021 (Clytia hemisphaerica)
ACACAATTACTCATCACAGAAAAAACTAAGTTACTCTTATTCCCAACCTC
TTTTTCAATCAGCCCAGCCTCGATTTGATGTTTTCgttcaatgacgtcat
aatatgGTGTGATGATTTCGGACTTGTGATAGTAAGTGGCAGTCCAATTA
AAAAGATTGTCATAATCACCAAGTCTATATTTGCCAGTATTAACTGTAAA
AGGGTTTTCTTGTGTCATGAATAGCCATATTTGTTGTGGATTTCGTGGTA
TTTTCTGCATATCTTGAGGTGCTAGTAAATCGTTACCGTGAAAAAGAACA
ATGTCGCTAGAATGTATGCGTTCGTGTTGGGTAGTGAACTCGCATTGCTT
TCGTACGTTACAATCTGTCGTACTGATACCTGTCGGATATTTGCTTTCCC
AGTTGCCACCAAAATATGGTGTGTATAGCAAAATGAGGTATGGTAAAGTT
GATTTTGTTCCTTTTCTGTGTGTTTGCGCTGGTTTTGTTGTCCACGCTTC
GAATTTAAAGTGAAATTCTGTTCGACTTACATAAAATCCGGTGATAATCA
AAGCAATTATAAGAAAGGTTTTTCCTTTAGCCATTCTAGTCTTAGAGAGT
TTATTAAATCGAATTGCTTATGATTATTCAAACTCGAAGCTTT

Coding sequence (CDS) from alignment at scaffold_117:151379..152021

>TCONS_00046839 ID=TCONS_00046839|Name=TCONS_00046839|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_117:151379..152021 (Clytia hemisphaerica)
ACAATTACTCATCACAGAAAAAACTAAGTTACTCTTATTCCCAACCTCTT
TTTCAATCAGCCCAGCCTCGATTTGATGTTTTCgttcaatgacgtcataa
tatgGTGTGATGATTTCGGACTTGTGATAGTAAGTGGCAGTCCAATTAAA
AAGATTGTCATAATCACCAAGTCTATATTTGCCAGTATTAACTGTAAAAG
GGTTTTCTTGTGTCATGAATAGCCATATTTGTTGTGGATTTCGTGGTATT
TTCTGCATATCTTGAGGTGCTAGTAAATCGTTACCGTGAAAAAGAACAAT
GTCGCTAGAATGTATGCGTTCGTGTTGGGTAGTGAACTCGCATTGCTTTC
GTACGTTACAATCTGTCGTACTGATACCTGTCGGATATTTGCTTTCCCAG
TTGCCACCAAAATATGGTGTGTATAGCAAAATGAGGTATGGTAAAGTTGA
TTTTGTTCCTTTTCTGTGTGTTTGCGCTGGTTTTGTTGTCCACGCTTCGA
ATTTAAAGTGAAATTCTGTTCGACTTACATAAAATCCGGTGATAATCAAA
GCAATTATAAGAAAGGTTTTTCCTTTAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029883XLOC_029883Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046839-proteinTCONS_00046839-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046839-exon-scaffold_117-1491911889:151379..152021TCONS_00046839-exon-scaffold_117-1491911889:151379..152021Clytia hemisphaericaexon
TCONS_00046839-exon-scaffold_117-1510915933:151379..152021TCONS_00046839-exon-scaffold_117-1510915933:151379..152021Clytia hemisphaericaexon
TCONS_00046839-exon-scaffold_117-1575043694:151379..152021TCONS_00046839-exon-scaffold_117-1575043694:151379..152021Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:151379..152021 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0797152	0	0.0905525	0	0	0.210195	0	0	0	0.248459	0	2.01157	1.29859	1.20687	1.54422	0.122733	0.566087	0.260693	0.181864	0.158073	0	0.0937283	0.340851	0	1.33161	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR031481Glyco_tran_10_N
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046839 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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