TCONS_00046836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046836
Unique NameTCONS_00046836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length832

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046836 ID=TCONS_00046836|Name=TCONS_00046836|organism=Clytia hemisphaerica|type=transcript|length=832bp
gttgaTATTTATGACTGAGAAAATTGCATCTAAAACAAactgaaaacaat
aaaacaataatttaaaattttataaacgtttttataatataaaatcTAGG
AACAAGTtgatatcaaaaattttaaagattatttcaatactgtaaaataa
ataaaaatatgtttttgtcGTTTTTCCTATTGAtttcataaatatttttt
tttcagaaaatgccTGATAAAGTTATTCCTACCTATGAATCTAGATTATG
TGAAAGatgaaattcatttcatttcatgtttttaccaaaTCAATGGTATT
TAATGGTATTTATGGCAATTTATGTTACTTCTAATATTTAATGAAACTGC
TACTGTCAACAGGACGGAGCAAGATATCAATCATATGAATTACATAAATT
TAATCGTAAAAACTAGGCGTAACAAAATATTTCAGTGCGTTGTACCAAAT
CAAGCAATCACCTTGAAATTTAAATCAATGTTaaatgaaacttttttgtt
AAAGGAATTCACCGTCGCCAAAATAAAGGAACACAGCATACATACCACGA
AGACACTcactctcaggtgcctaatacAATGGAGGGTGCGTCTGAATAAA
CGGGGGTGGGGCCTTAGACGTGGGTGGGGGGTCGGAAAAATCTTAAttct
aataaacggggggttaaTAACCGGGGAATGGGAAATTGTACCTCTCAATA
CCAAAAAATAAGTTAATTCAGAGCAAAATGAGGGATTCTTTTTTTTTACA
GTCGAAAATATTTTCAACAAGTGAAACTTTTATGGACCTACCTGGTTATG
CAtttaacacatatataattgttATCTACGTG
Run BLAST on NCBI

transcript from alignment at scaffold_117:149217..150048

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046836 ID=TCONS_00046836|Name=TCONS_00046836|organism=Clytia hemisphaerica|type=transcript|length=832bp|location=Sequence derived from alignment at scaffold_117:149217..150048 (Clytia hemisphaerica)
CACGTAGATaacaattatatatgtgttaaaTGCATAACCAGGTAGGTCCA
TAAAAGTTTCACTTGTTGAAAATATTTTCGACTGTAAAAAAAAAGAATCC
CTCATTTTGCTCTGAATTAACTTATTTTTTGGTATTGAGAGGTACAATTT
CCCATTCCCCGGTTAttaaccccccgtttattagaaTTAAGATTTTTCCG
ACCCCCCACCCACGTCTAAGGCCCCACCCCCGTTTATTCAGACGCACCCT
CCATTgtattaggcacctgagagtgAGTGTCTTCGTGGTATGTATGCTGT
GTTCCTTTATTTTGGCGACGGTGAATTCCTTTaacaaaaaagtttcattt
AACATTGATTTAAATTTCAAGGTGATTGCTTGATTTGGTACAACGCACTG
AAATATTTTGTTACGCCTAGTTTTTACGATTAAATTTATGTAATTCATAT
GATTGATATCTTGCTCCGTCCTGTTGACAGTAGCAGTTTCATTAAATATT
AGAAGTAACATAAATTGCCATAAATACCATTAAATACCATTGAtttggta
aaaacatgaaatgaaatgaatttcatCTTTCACATAATCTAGATTCATAG
GTAGGAATAACTTTATCAggcattttctgaaaaaaaaatatttatgaaaT
CAATAGGAAAAACgacaaaaacatatttttatttattttacagtattgaa
ataatctttaaaatttttgatatcaACTTGTTCCTAgattttatattata
aaaacgtttataaaattttaaattattgttttattgttttcagtTTGTTT
TAGATGCAATTTTCTCAGTCATAAATAtcaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029880XLOC_029880Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046836-exon-scaffold_117-1491911889:149217..150048TCONS_00046836-exon-scaffold_117-1491911889:149217..150048Clytia hemisphaericaexon
TCONS_00046836-exon-scaffold_117-1510915933:149217..150048TCONS_00046836-exon-scaffold_117-1510915933:149217..150048Clytia hemisphaericaexon
TCONS_00046836-exon-scaffold_117-1575043694:149217..150048TCONS_00046836-exon-scaffold_117-1575043694:149217..150048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:149217..150048 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.74617	3.62016	13.1925	14.9188	7.52598	4.8548	3.73391	2.87876	1.34473	1.66775	1.32978	1.32998	1.5165	1.85016	2.10743	2.22472	1.45427	1.66614	1.4549	1.64883	1.99	2.2625	5.303	3.98268	5.19866	6.16606	2.98065	2.59557	6.49081	5.94856
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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