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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046833 ID=TCONS_00046833|Name=TCONS_00046833|organism=Clytia hemisphaerica|type=transcript|length=1548bp
CAGACATCGGATTATTATCATGGGGAAGTGTCTGTTTATAAAGTCACTTC
ATTTGAGGAAATAAACCAAGGCCATTTGTGATATTTTAAACGGAAGCACT
CTAAATCGCGCAGTtgtttgccactaattttgaattcTTAAATCAATAAA
ACTTGTGACGAACACCTGGCTTATTTTGGGTggttccgtataaaacatta
cgtcataaatgtCAAGAATAACGATGCTACGACTACAGTAATATGTTCAT
GATATGAATTTCTATATTTtatactcaaaacaaaatgaaaatttatttat
tgtaGAATATGGTAGGTGGTGGTGTAACAAGGTGTAGGGGACTAAATTTT
TTACATAATACCTTTTTGACAATGAAaagaagcatttttattttataact
tCTTAATTTTATCTCGTAATAATTTTTGTCAGTTTTTATTTATGTCATgt
atttctaatgtttttaaatttgcctATCTATAAGTAGGTCCCATAATTTG
TCACTTTTGTTAAAATTGACAAATTAAACGCGCGGCATTAATTCAACGCT
CATCTAAAGCTCTTAGCTTCTGTCGACGCCACNTCAAATTAAACGTGCGA
CGTTGATTCAACGCTCATCTAAAGCTCTTAGCCTCTTTTAACGCCACCCT
ATGggcgttgttttgacgtttttttgacgtttttttgcTATAATCCCCCA
AGGAATATCTTGACAAAAAATCCGTCCCCCAGACCCCACTATCAGTGTTG
AGTCCGGAATTGGCAGTGCTGACAGTGGGGGGAGGGCATGTGTGTGAAGT
GTCTCATATATGAATTGGGGATTGTAGCTGGGACTCAAAGTCATACGAGG
TTCCGAGTACTTGAGAaattgaaatcttgaaatttaCTTGTCATCTGGTC
CAAAGAAACAGGTGAATCTTAAACCTTTCCCAAGCAAAAAGATAAGGCCT
TAAAATTTGCGCCACATATTCCAATggcggattgaatctagcaatttctt
tgttttagcgtttcaaatttctcaatttttgatggtGAATGTCACTTCTa
ttattcttttatattccACGGGAATCGCACAACTTATGAAGAGATAAGTG
ACTTCAAAACCTAACTCTAGCCTTCGTCTGTACCTTACTGTGTAAAATtc
atgttgttttttataagtaagtatctgcccctacatcagggtCGCATTag
gcttagcattctattgttcttaataGAGCTATTGTTTAGGTAACAACTGA
GCCtatgtatgcttataagcgttatgcttacaGAAAAAAAGACATGTAGC
ATGTATTACTAGCAAATACCAAGGGAGATCTTAACCTGGTAATACACTTC
TCGTATTATCTTGTCCGCGAATAAGAGATACAGGCTTGTATGGATTTATA
TTTCATCCCTCCGTGTTCTCTGATTTTCTTGACCGCAAATAACTTCTGAC
TTCGGTTTTCATTGCTCTCAAATAATAGGCTCTTTctggagaaaatattt
tttgcgtcaTTGTTATTTCGCGTAGGTTTTGAAGTGCCGCCTTTGGAC Run BLAST on NCBI transcript from alignment at scaffold_117:92034..93581 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046833 ID=TCONS_00046833|Name=TCONS_00046833|organism=Clytia hemisphaerica|type=transcript|length=1548bp|location=Sequence derived from alignment at scaffold_117:92034..93581 (Clytia hemisphaerica)
GTCCAAAGGCGGCACTTCAAAACCTACGCGAAATAACAAtgacgcaaaaa
atattttctccagAAAGAGCCTATTATTTGAGAGCAATGAAAACCGAAGT
CAGAAGTTATTTGCGGTCAAGAAAATCAGAGAACACGGAGGGATGAAATA
TAAATCCATACAAGCCTGTATCTCTTATTCGCGGACAAGATAATACGAGA
AGTGTATTACCAGGTTAAGATCTCCCTTGGTATTTGCTAGTAATACATGC
TACATGTCTTTTTTTCtgtaagcataacgcttataagcatacataGGCTC
AGTTGTTACCTAAACAATAGCTCtattaagaacaatagaatgctaagcct
AATGCGaccctgatgtaggggcagatacttacttataaaaaacaacatga
ATTTTACACAGTAAGGTACAGACGAAGGCTAGAGTTAGGTTTTGAAGTCA
CTTATCTCTTCATAAGTTGTGCGATTCCCGTggaatataaaagaataatA
GAAGTGACATTCaccatcaaaaattgagaaatttgaaacgctaaaacaaa
gaaattgctagattcaatccgccATTGGAATATGTGGCGCAAATTTTAAG
GCCTTATCTTTTTGCTTGGGAAAGGTTTAAGATTCACCTGTTTCTTTGGA
CCAGATGACAAGtaaatttcaagatttcaattTCTCAAGTACTCGGAACC
TCGTATGACTTTGAGTCCCAGCTACAATCCCCAATTCATATATGAGACAC
TTCACACACATGCCCTCCCCCCACTGTCAGCACTGCCAATTCCGGACTCA
ACACTGATAGTGGGGTCTGGGGGACGGATTTTTTGTCAAGATATTCCTTG
GGGGATTATAgcaaaaaaacgtcaaaaaaacgtcaaaacaacgccCATAG
GGTGGCGTTAAAAGAGGCTAAGAGCTTTAGATGAGCGTTGAATCAACGTC
GCACGTTTAATTTGANGTGGCGTCGACAGAAGCTAAGAGCTTTAGATGAG
CGTTGAATTAATGCCGCGCGTTTAATTTGTCAATTTTAACAAAAGTGACA
AATTATGGGACCTACTTATAGATaggcaaatttaaaaacattagaaatac
ATGACATAAATAAAAACTGACAAAAATTATTACGAGATAAAATTAAGaag
ttataaaataaaaatgcttcttTTCATTGTCAAAAAGGTATTATGTAAAA
AATTTAGTCCCCTACACCTTGTTACACCACCACCTACCATATTCtacaat
aaataaattttcattttgttttgagtataAAATATAGAAATTCATATCAT
GAACATATTACTGTAGTCGTAGCATCGTTATTCTTGacatttatgacgta
atgttttatacggaaccACCCAAAATAAGCCAGGTGTTCGTCACAAGTTT
TATTGATTTAAgaattcaaaattagtggcaaacaACTGCGCGATTTAGAG
TGCTTCCGTTTAAAATATCACAAATGGCCTTGGTTTATTTCCTCAAATGA
AGTGACTTTATAAACAGACACTTCCCCATGATAATAATCCGATGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046833-exon-scaffold_117-1491911889:92034..93581 | TCONS_00046833-exon-scaffold_117-1491911889:92034..93581 | Clytia hemisphaerica | exon |
| TCONS_00046833-exon-scaffold_117-1510915933:92034..93581 | TCONS_00046833-exon-scaffold_117-1510915933:92034..93581 | Clytia hemisphaerica | exon |
| TCONS_00046833-exon-scaffold_117-1575043694:92034..93581 | TCONS_00046833-exon-scaffold_117-1575043694:92034..93581 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:92034..93581 . |
Blast
The following BLAST results are available for this feature:
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