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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046827 ID=TCONS_00046827|Name=TCONS_00046827|organism=Clytia hemisphaerica|type=transcript|length=910bp
TGAGACTCCCCTGTATAACCTCAATTAATCATTGGGCTGAATAGAAAGGC
ATTTTGTCCAAGGGTGAAACGCGTACACAGGGGTTGAAAGATCGGTGAAA
GATCCAGAGCTAGATGATTGAGAAAATAATATCCTCCGCCCCAATGAACG
GATTTGCTGACTTTAAAAACGTTTATCAATCGTCGCAACATCTTTCATCT
CGACATTTAAATAACGTCCACTTCTTGCAGCAAAACACACAGCTGGTATG
AAGGGTACAGTATATCTGAAGATTTGATTATACATCGATGGTAAGAACTC
CAAAGCAAATTTGATAGCAAAGAAACCGATTGAACAAAGAATAAAACTAA
ACAATGACACTGTATATCCACTGTATCGATCCTCTAAcattgaaaatcct
ttttctaAGATGACCACAAATAAGAATAACACTTTATAAGATATGTAAGC
TAAACCAACAGCTTCACCCATTCTCAGGTTAAAACGACTGCATTCCACAT
TTCTGGTTAAAGAGCGTAGGTAACTACTATCCAGAACTTGAGAAGTATTC
AAAAACTTGGTAAAGGTGGTATGGCAATTCAGTTCTTTGTTTGTCGCATG
GTTTTTACATTCCCACTTAGAATCTGAATCCAACAAAGCGTCCATAGGGC
ATCCCTCTCTTATTTCGTAAGCCTCAAAATACACAACAAAAAAGGCGATC
CAAAAACCATAAACTGTCAAAAATGCAAGATTCGAAACAAAACTGTATTC
CGCATAACGTGGATTGTTTTCTACTTTACGACCGTTATAAACAATAACTT
TTTGAGTGTTTCCATTTTTCTCTACAACTAAACGTTCTTTGACCAGTTGA
AATGGGATAGTTATAGTGAGAAACTTCAAGATCTTCTGTTGATTGGGTTT
GATAGATAAA Run BLAST on NCBI protein sequence of TCONS_00046827-protein >TCONS_00046827-protein ID=TCONS_00046827-protein|Name=TCONS_00046827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
LSIKPNQQKILKFLTITIPFQLVKERLVVEKNGNTQKVIVYNGRKVENNP
RYAEYSFVSNLAFLTVYGFWIAFFVVYFEAYEIREGCPMDALLDSDSKWE
CKNHATNKELNCHTTFTKFLNTSQVLDSSYLRSLTRNVECSRFNLRMGEA
VGLAYISYKVLFLFVVILEKGFSMLEDRYSGYTVSLFSFILCSIGFFAIK
FALEFLPSMYNQIFRYTVPFIPAVCFAARSGRYLNVEMKDVATIDKRF Run BLAST on NCBI transcript from alignment at scaffold_117:19739..20648 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046827 ID=TCONS_00046827|Name=TCONS_00046827|organism=Clytia hemisphaerica|type=transcript|length=910bp|location=Sequence derived from alignment at scaffold_117:19739..20648 (Clytia hemisphaerica)
TTTATCTATCAAACCCAATCAACAGAAGATCTTGAAGTTTCTCACTATAA
CTATCCCATTTCAACTGGTCAAAGAACGTTTAGTTGTAGAGAAAAATGGA
AACACTCAAAAAGTTATTGTTTATAACGGTCGTAAAGTAGAAAACAATCC
ACGTTATGCGGAATACAGTTTTGTTTCGAATCTTGCATTTTTGACAGTTT
ATGGTTTTTGGATCGCCTTTTTTGTTGTGTATTTTGAGGCTTACGAAATA
AGAGAGGGATGCCCTATGGACGCTTTGTTGGATTCAGATTCTAAGTGGGA
ATGTAAAAACCATGCGACAAACAAAGAACTGAATTGCCATACCACCTTTA
CCAAGTTTTTGAATACTTCTCAAGTTCTGGATAGTAGTTACCTACGCTCT
TTAACCAGAAATGTGGAATGCAGTCGTTTTAACCTGAGAATGGGTGAAGC
TGTTGGTTTAGCTTACATATCTTATAAAGTGTTATTCTTATTTGTGGTCA
TCTtagaaaaaggattttcaatgTTAGAGGATCGATACAGTGGATATACA
GTGTCATTGTTTAGTTTTATTCTTTGTTCAATCGGTTTCTTTGCTATCAA
ATTTGCTTTGGAGTTCTTACCATCGATGTATAATCAAATCTTCAGATATA
CTGTACCCTTCATACCAGCTGTGTGTTTTGCTGCAAGAAGTGGACGTTAT
TTAAATGTCGAGATGAAAGATGTTGCGACGATTGATAAACGTTTTTAAAG
TCAGCAAATCCGTTCATTGGGGCGGAGGATATTATTTTCTCAATCATCTA
GCTCTGGATCTTTCACCGATCTTTCAACCCCTGTGTACGCGTTTCACCCT
TGGACAAAATGCCTTTCTATTCAGCCCAATGATTAATTGAGGTTATACAG
GGGAGTCTCA Coding sequence (CDS) from alignment at scaffold_117:19739..20648 >TCONS_00046827 ID=TCONS_00046827|Name=TCONS_00046827|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_117:19739..20648 (Clytia hemisphaerica)
TTATCTATCAAACCCAATCAACAGAAGATCTTGAAGTTTCTCACTATAAC
TATCCCATTTCAACTGGTCAAAGAACGTTTAGTTGTAGAGAAAAATGGAA
ACACTCAAAAAGTTATTGTTTATAACGGTCGTAAAGTAGAAAACAATCCA
CGTTATGCGGAATACAGTTTTGTTTCGAATCTTGCATTTTTGACAGTTTA
TGGTTTTTGGATCGCCTTTTTTGTTGTGTATTTTGAGGCTTACGAAATAA
GAGAGGGATGCCCTATGGACGCTTTGTTGGATTCAGATTCTAAGTGGGAA
TGTAAAAACCATGCGACAAACAAAGAACTGAATTGCCATACCACCTTTAC
CAAGTTTTTGAATACTTCTCAAGTTCTGGATAGTAGTTACCTACGCTCTT
TAACCAGAAATGTGGAATGCAGTCGTTTTAACCTGAGAATGGGTGAAGCT
GTTGGTTTAGCTTACATATCTTATAAAGTGTTATTCTTATTTGTGGTCAT
CTtagaaaaaggattttcaatgTTAGAGGATCGATACAGTGGATATACAG
TGTCATTGTTTAGTTTTATTCTTTGTTCAATCGGTTTCTTTGCTATCAAA
TTTGCTTTGGAGTTCTTACCATCGATGTATAATCAAATCTTCAGATATAC
TGTACCCTTCATACCAGCTGTGTGTTTTGCTGCAAGAAGTGGACGTTATT
TAAATGTCGAGATGAAAGATGTTGCGACGATTGATAAACGTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046827-exon-scaffold_117-1491911889:19739..20648 | TCONS_00046827-exon-scaffold_117-1491911889:19739..20648 | Clytia hemisphaerica | exon |
| TCONS_00046827-exon-scaffold_117-1510915933:19739..20648 | TCONS_00046827-exon-scaffold_117-1510915933:19739..20648 | Clytia hemisphaerica | exon |
| TCONS_00046827-exon-scaffold_117-1575043694:19739..20648 | TCONS_00046827-exon-scaffold_117-1575043694:19739..20648 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:19739..20648 . |
Blast
The following BLAST results are available for this feature:
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