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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046822 ID=TCONS_00046822|Name=TCONS_00046822|organism=Clytia hemisphaerica|type=transcript|length=1187bpRun BLAST on NCBI protein sequence of TCONS_00046822-protein >TCONS_00046822-protein ID=TCONS_00046822-protein|Name=TCONS_00046822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp FFSYLQKIYKKKEIRRNRKINIQELIWKMSFAGKKVLVTGAGKGIGKGCCRun BLAST on NCBI transcript from alignment at scaffold_117:594207..603692- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046822 ID=TCONS_00046822|Name=TCONS_00046822|organism=Clytia hemisphaerica|type=transcript|length=9486bp|location=Sequence derived from alignment at scaffold_117:594207..603692- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_117:594207..603692- >TCONS_00046822 ID=TCONS_00046822|Name=TCONS_00046822|organism=Clytia hemisphaerica|type=CDS|length=6600bp|location=Sequence derived from alignment at scaffold_117:594207..603692- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046822 vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2) HSP 1 Score: 239.965 bits (611), Expect = 3.559e-76 Identity = 129/244 (52.87%), Postives = 173/244 (70.90%), Query Frame = 2
Query: 83 KMSFAGKKVLVTGAXXXXXXXXXXDLAKQGADVFALSRTQKDLDDLKNELPNIHCINVDLLDVSATSDALEKLPDDITMVVNNAGYSKVGHFLDVTEEDFDMIWKINVKSMFIVSQIMAKKMIQNGKGGSFVNVSSQASKVALPEHTAYCTSKGGVDQLTRMMALELGPHQIRTNAVNPTVVLTKMGKMVWDNPN-GIPMKNGIPQGKFAEVEDVVNAILYLLSDKSDMINGTTLPIDGGFLAC 811
++ AG++VLVTGAGKGIG+G L GA V A+SRTQ DLD L E P I + VDL D AT AL + + ++VNNA + + FL+VT+E FD +++N++++ VSQI+A+ +I G G+ VNVSSQ S+ A+ H+ YC++KG +D LT++MALELGPH+IR NAVNPTVV+T MG+ W +P+ M N IP GKFAEVE VVNAIL+LLSD+S M G+TLP++GGF AC
Sbjct: 2 ELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSV-GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGFWAC 244 The following BLAST results are available for this feature:
BLAST of TCONS_00046822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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