TCONS_00046800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046800
Unique NameTCONS_00046800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046800 ID=TCONS_00046800|Name=TCONS_00046800|organism=Clytia hemisphaerica|type=transcript|length=243bp
ATATTTTGGAgacattattttcaattttgcaataagtttttgaaaaatga
aaacaaccatTCAAGAATTGAATTTACGGGCGTTAGAACGAGTAAAGCGG
AAAGGTAGATGAACACATGGTATTTACGCCAGGTTTTCGAGAATTAATTA
ACAGACTTGACATTTGTCGATTTTGCAgtggttttgaaaataaatgaaaa
caaggATAGCTTCAAAAATGAATAGATAAACAATTGTCCTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_117:258206..258507-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046800 ID=TCONS_00046800|Name=TCONS_00046800|organism=Clytia hemisphaerica|type=transcript|length=302bp|location=Sequence derived from alignment at scaffold_117:258206..258507- (Clytia hemisphaerica)
ATATTTTGGAGACATTATTTTCAATTTTGCAATAAGTTTTTGAAAAATGA
AAACAACCATTCAAGAATTGAATTTACGGGCGTTAGAACGAGTAAAGCGG
AAAGGTAGATGAACACATGGTATTTACGCCAGGTTTTCGAGAATTAATTA
ACAGACTTGACATTTGTCGATTNACATGGTATTTACGCCAGGTTTTCGAG
AATTAATTAACAGACTTAACATTTGTCGATTTTGCAGTGGTTTTGAAAAT
AAATGAAAACAAGGATAGCTTCAAAAATGAATAGATAAACAATTGTCCTT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029861XLOC_029861Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046800-exon-scaffold_117-1575043694:258347..258507TCONS_00046800-exon-scaffold_117-1575043694:258347..258507Clytia hemisphaericaexon
TCONS_00046800-exon-scaffold_117-1575043694:258206..258287TCONS_00046800-exon-scaffold_117-1575043694:258206..258287Clytia hemisphaericaexon
TCONS_00046800-exon-scaffold_117-1510915933:258347..258507TCONS_00046800-exon-scaffold_117-1510915933:258347..258507Clytia hemisphaericaexon
TCONS_00046800-exon-scaffold_117-1510915933:258206..258287TCONS_00046800-exon-scaffold_117-1510915933:258206..258287Clytia hemisphaericaexon
TCONS_00046800-exon-scaffold_117-1491911889:258347..258507TCONS_00046800-exon-scaffold_117-1491911889:258347..258507Clytia hemisphaericaexon
TCONS_00046800-exon-scaffold_117-1491911889:258206..258287TCONS_00046800-exon-scaffold_117-1491911889:258206..258287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:258206..258507 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.926241	1.0071	0.970469	0	0	0	1.10196	3.38069	3.7298	2.80793	3.47349	2.08206	0.57004	0.591992	0	0	1.44019	0	0	0	0	0	0	0	0	1.6426	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top