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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046780 ID=TCONS_00046780|Name=TCONS_00046780|organism=Clytia hemisphaerica|type=transcript|length=1900bp
GCGAAATTGGCAACCTTACGGATTGCGTTTACTTTCATAAGTCAGGGTTA
CTTTAATCTCTTCCAAATGACAGACTATTCTTTGAGCTCTCAATTTATAA
AAAATGGAAGTGTTAACTTAAGTTTTTATTCTAACTTTAATttatagtca
tctggggtagTTACAGGACAGTTAAAATAAAGGGGTAAATATGGGACACC
CCTAAAAACCGTGACTGttaaaattattataaatttggaTTTCAGATGGA
TGGGATTTTGGAGTCATTCTAGCTACTAGAAAACTGTCTAGTAAGATTAT
TCTAAcatatacttttgatgtttcAACACAAGTTTAAACATGTGTGacca
taaaaatcaattttcgtagTTTTAGAGGGAACTTTTCAAGCTTTAGTGTC
AGGAAGAGTTGTAATCACTTTGATTAATATACATAAATCACAGGTGAGAA
AAGTCTATGCTCTAGCCTTTCTATATTTGCATAAGACAATGATGCCTAAT
CTTGCAAATTATGTTGTTTGGAGGTGATGAAAGTAATTACCCCTTCCTTA
TAAAAGTGACCAGCTAATTGACAATACTTGTATTCATATCTCTAAACATG
TTTTAATAAAGTTAAGTTAAAAAGTCAGATTATAGAATAACACAATTGCA
TATAACAAGAAGTGATATGTCTGCCCTACCTTCATCAGAATCAAAAGATG
GCAAACAAGCTGGTTATGCTAATGGATTAGATTTccttTCTCATCATTAT
GAAATTGACAACTCTGCCACCAGGCTGAAAATTAGTGAAATATATGAACA
CTTTTGCCAGTCTTTCCCAAACACTTCTTTGAAAGCATTTGGTTCTACAG
TCAAAAAAGCATTTccatttattgaaaagaaaaattccaATGGCTGTGCA
TATTATACAAATATCAAAAGACATGTTGTTAAAGCTACAACACCTGATGA
GAACCCTGATAGCTCAATGCCAGATTTGCCAAAATGTATGTTCTTGGACA
AAAAGTTGTTTTCCGTTAACAAGCGCCATGTTATGGATGGAGCAACATCT
TCTGTCTTCTTTGGGAAATATAATGAAACACAAGTTTGCATTAAACAATA
TAAACCAAATGTTGAAGTTCATGAAGTTTATAATGAAGCACAGATACTTT
TATCACTTCCAGCATCAGAATATCTATGTTTTTTGGTGGGAGTTTGTTTA
GAGAGGCCACAACGATTGGTTACCAGTTTCTTCGGTTCAGATTTTCCAGC
AAGGAACACTTTGGACTACCATATTAAAAGCAAAACTGTCTCTATTGCCA
ATACATTTTTTATCATAAGAAAGCTACTTGATGCAGTAAGCTTTcttcac
aaaaataatgtttttcacGGAGATATTAAACCTAACAATTTATTGGTTTT
ATTTGTCGATACGTTGAAGCTAAGGGTTATCGATTTTGGATGCAGTTCTT
TCATTAGTGAGAGAGAAAATAAGATTTACAATGGTATCCTAGAAGAAGAG
AAGGAATCAATCTCTTTATTAATCAAATGCAACAAGCATATTGCGCCTGA
GGTACATTATGGCTATCCAAGAAGCAGCCTAACTGACATATATGGTATTG
GCTACACatcaaaaaaactcatttcaGTCAATCAAAGTATAACAACAAAC
AATAATAAGAGACTTTTTTCCCTAATACAAAAATGTTTACAATTAGATCC
TTATAAAAGGCCTAGCATCCTTGAATTGCAAAGTGCCTTGTAAGTGAATT
AAACTGAatcaaatgattaaaaaaaccaCTGCAttacaaagaaatatttt
tcatttttgacaaatttaacGAATCATTTCATTTCGTTCACTTTTTGGTT
TGGCATGGTtgtgcatttttctttttatatttttgcttgGTATATGCTTG Run BLAST on NCBI protein sequence of TCONS_00046780-protein >TCONS_00046780-protein ID=TCONS_00046780-protein|Name=TCONS_00046780-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
MSALPSSESKDGKQAGYANGLDFLSHHYEIDNSATRLKISEIYEHFCQSF
PNTSLKAFGSTVKKAFPFIEKKNSNGCAYYTNIKRHVVKATTPDENPDSS
MPDLPKCMFLDKKLFSVNKRHVMDGATSSVFFGKYNETQVCIKQYKPNVE
VHEVYNEAQILLSLPASEYLCFLVGVCLERPQRLVTSFFGSDFPARNTLD
YHIKSKTVSIANTFFIIRKLLDAVSFLHKNNVFHGDIKPNNLLVLFVDTL
KLRVIDFGCSSFISERENKIYNGILEEEKESISLLIKCNKHIAPEVHYGY
PRSSLTDIYGIGYTSKKLISVNQSITTNNNKRLFSLIQKCLQLDPYKRPS
ILELQSAL Run BLAST on NCBI transcript from alignment at scaffold_117:423085..426342+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046780 ID=TCONS_00046780|Name=TCONS_00046780|organism=Clytia hemisphaerica|type=transcript|length=3258bp|location=Sequence derived from alignment at scaffold_117:423085..426342+ (Clytia hemisphaerica)
GCGAAATTGGCAACCTTACGGATTGCGTTTACTTTCATAAGTCAGGGTTA
CTTTAATCTCTTCCAAATGACAGACTATTCTTTGAGCTCTCAATTTATAA
AAAATGGAAGTGTTAACTTAAGTTTTTATTCTAACTTTAATttatagtca
tctggggtagTTACAGGACAGTTAAAATAAAGGGGTAAATATGGGACACC
CCTAAAAACCGTGACTGttaaaattattataaatttggaTTTCAGATGGA
TGGGATTTTGGAGTCATTCTAGCTACTAGAAAACTGTCTAGTAAGATTAT
TCTAAcatatacttttgatgtttcAACACAAGTTTAAACATGTGTGacca
taaaaatcaattttcgtagTTTTAGAGGGAACTTTTCAAGCTTTAGTGTC
AGGAAGAGTTGTAATCACTTTGATTAATATACATAAATCACAGGTGAGAA
AAGTCTATGCTCTAGCCTTTCTATATTTGCATAAGACAATGATGCCTAAT
CTTGCAAATTATGTTGTTTGGAGGTGATGAAAGTAATTACCCCTTCCTTA
TAAAAGTGACCAGCTAATTGACAATACTTGTATTCATATCTCTAAACATG
TTTTAATAAAGTTAAGTTAAAAAGTCAGATTATAGAATAACACAATTGCA
TATAACAAGAAGTGATATGTCTGCCCTACCTTCATCAGAATCAAAAGATG
GCAAACAAGCTGGTTATGCTAATGGATTAGATTTGTAAGCATGCATTTTT
ATGACGTGATGTTCTCCTTGCTACaataccttttcatttttttattacct
ACTTAGATTTCTATTCCATTTTTGTCTAACAAAATTGACATACCTTTATG
GGGCCTAATTCGTTTAGAAAACTTTCCCTTCCTTTTCTTAACAGTCTTTT
AGTTTTATCAAGTTGGGATGACTGTCTAAAATCAGattgaaataattttg
taattatttgcttttttttttaatgtaattttaatgtttgaaatgaaaat
ctatcaaaatatatatatattttttctttttagccttTCTCATCATTATG
AAATTGACAACTCTGCCACCAGGCTGAAAATTAGTGAAATATATGAACAC
TTTTGCCAGTCTTTCCCAAACACTTCTTTGAAAGCATTTGGTTCTACAGT
CAAAAAAGCATTTccatttattgaaaagaaaaattccaATGGCTGTGCAT
ATTATACAAATATCAAAAGACATGTTGTTAAAGGTTTGTCATCATTCGAT
AAGACTTTTCTATTGAAAGATCTTGAAAAATGGTATTTAACCACGCATCT
AGCATAATTTTGAAGCTAATGATAGCCTTACTTAAAATGGGaccaaatct
tcaaaaaatttcttcaaactttgtcttttgtttgtacTGTAGAACAGTTT
AGGTACTCCACCCaacactgtttttttttgtctcatTAACATTAGAAACT
TTTCAGCATGAGCATGTCATATTGgtcctattttttttttttttcaatta
agaTTATGGTAATCAAACCAGATACAGGAGGAtgtcttttgttaaaaaag
attttttaaatttatcaactgcttcaaacttttttctgtAATTTGTTTAA
TGTTTCAGACGTTCTTGGGCCCTGCAAACAGTTAAACGTGACTTCCAATG
TTTTATGATTTTCCTTCACCATGATGGAAATCTCCAGTAGATTACTCATT
TACCCAAATCTATGACTTGTTTTCATTAATATCAGATGATGATTTTTCCC
TGTTTCTCATAAAAGCCTTTTAGATTTCAAGTTCTAAATACACAGGTCTT
CGGTTGCATTTTAATCAAACCAACTTGGTTTATTATTGGCTTAGACATGG
acgtttttgaaaattatatgtTTGTGTACAATGTTTTTAGCCAATAACCC
TTATCAAGTTGGTTTGTTTACATGCGATTTTCAtgactttttaacaaaaa
atagctaacaggaaacccgtgtattatcatcaaaaaattctctaatatat
taagcaaaaaatagtaaTGGCAATAGCATCCAAATAAATAGGCAAGAAAC
TTGCTTGATTTTGTTGCCTACTCAACAATTATCAGACCATTTTTATGCCT
TTTTAAAGAGTCTGGTTATCAGATTAacaaaaattatgcaaaaacaGCCA
CaagaataataataaaaacAGTCTTTCTAGAATATCCCCTGATTACAAAT
GAATTTAAGGTAATTGTAATGCCAAAGTACTAACGAGACAAGATTACTAA
ATGATGGATACATGAAtttagaaatataatttttattaacaGCTACAACA
CCTGATGAGAACCCTGATAGCTCAATGCCAGATTTGCCAAAATGTATGTT
CTTGGACAAAAAGTTGTTTTCCGTTAACAAGCGCCATGTTATGGATGGAG
CAACATCTTCTGTCTTCTTTGGGAAATATAATGAAACACAAGTTTGCATT
AAACAATATAAACCAAATGTTGAAGTTCATGAAGTTTATAATGAAGCACA
GATACTTTTATCACTTCCAGCATCAGAATATCTATGTTTTTTGGTGGGAG
TTTGTTTAGAGAGGCCACAACGATTGGTTACCAGTTTCTTCGGTTCAGAT
TTTCCAGCAAGGAACACTTTGGACTACCATATTAAAAGCAAAACTGTCTC
TATTGCCAATACATTTTTTATCATAAGAAAGCTACTTGATGCAGTAAGCT
TTcttcacaaaaataatgtttttcacGGAGATATTAAACCTAACAATTTA
TTGGTTTTATTTGTCGATACGTTGAAGCTAAGGGTTATCGATTTTGGATG
CAGTTCTTTCATTAGTGAGAGAGAAAATAAGATTTACAATGGTATCCTAG
AAGAAGAGAAGGAATCAATCTCTTTATTAATCAAATGCAACAAGCATATT
GCGCCTGAGGTACATTATGGCTATCCAAGAAGCAGCCTAACTGACATATA
TGGTATTGGCTACACatcaaaaaaactcatttcaGTCAATCAAAGTATAA
CAACAAACAATAATAAGAGACTTTTTTCCCTAATACAAAAATGTTTACAA
TTAGATCCTTATAAAAGGCCTAGCATCCTTGAATTGCAAAGTGCCTTGTA
AGTGAATTAAACTGAatcaaatgattaaaaaaaccaCTGCAttacaaaga
aatatttttcatttttgacaaatttaacGAATCATTTCATTTCGTTCACT
TTTTGGTTTGGCATGGTtgtgcatttttctttttatatttttgcttgGTA
TATGCTTG Coding sequence (CDS) from alignment at scaffold_117:423085..426342+ >TCONS_00046780 ID=TCONS_00046780|Name=TCONS_00046780|organism=Clytia hemisphaerica|type=CDS|length=3231bp|location=Sequence derived from alignment at scaffold_117:423085..426342+ (Clytia hemisphaerica)
ATGTCTGCCCTACCTTCATCAGAATCAAAAGATGGCAAACAAGCTGGTTA
TGCTAATGGATTAGATTTccttTCTCATCATTATGAAATTGACAACTCTG
CCACCAGGCTGAAAATTAGTGAAATATATGAACACTTTTGCCAGTCTTTC
CCAAACACTTCTTTGAAAGCATTTGGTTCTACAGTCAAAAAAGCATTTcc
atttattgaaaagaaaaattccaATGGCTGTGCATATTATACAAATATCA
AAAGACATGTTGTTAAAGCTACAACACCTGATGAGAACCCTGATAGCTCA
ATGCCAGATTTGCCAAAATGTATGTTCTTGGACAAAAAGTTGTTTTCCGT
TAACAAGCGCCATGTTATGGATGGAGCAACATCTTCTGTCTTCTTTGGGA
AATATAATGAAACACAAGTTTGCATTAAACAATATAAACCAAATGTTGAA
GTTCATGAAGTTTATAATGAAGCACAGATACTTTTATCACTTCCAGCATC
AGAATATCTATGTTTTTTGGTGGGAGTTTGTTTAGAGAGGCCACAACGAT
TGGTTACCAGTTTCTTCGGTTCAGATTTTCCAGCAAGGAACACTTTGGAC
TACCATATTAAAAGCAAAACTGTCTCTATTGCCAATACATTTTTTATCAT
AAGAAAGCTACTTGATGCAGTAAGCTTTcttcacaaaaataatgtttttc
acGGAGATATTAAACCTAACAATTTATTGGTTTTATTTGTCGATACGTTG
AAGCTAAGGGTTATCGATTTTGGATGCAGTTCTTTCATTAGTGAGAGAGA
AAATAAGATTTACAATGGTATCCTAGAAGAAGAGAAGGAATCAATCTCTT
TATTAATCAAATGCAACAAGCATATTGCGCCTGAGGTACATTATGGCTAT
CCAAGAAGCAGCCTAACTGACATATATGGTATTGGCTACACatcaaaaaa
actcatttcaGTCAATCAAAGTATAACAACAAACAATAATAAGAGACTTT
TTTCCCTAATACAAAAATGTTTACAATTAGATCCTTATAAAAGGCCTAGC
ATCCTTGAATTGCAAAGTGCCTTGTAAATGTCTGCCCTACCTTCATCAGA
ATCAAAAGATGGCAAACAAGCTGGTTATGCTAATGGATTAGATTTccttT
CTCATCATTATGAAATTGACAACTCTGCCACCAGGCTGAAAATTAGTGAA
ATATATGAACACTTTTGCCAGTCTTTCCCAAACACTTCTTTGAAAGCATT
TGGTTCTACAGTCAAAAAAGCATTTccatttattgaaaagaaaaattcca
ATGGCTGTGCATATTATACAAATATCAAAAGACATGTTGTTAAAGCTACA
ACACCTGATGAGAACCCTGATAGCTCAATGCCAGATTTGCCAAAATGTAT
GTTCTTGGACAAAAAGTTGTTTTCCGTTAACAAGCGCCATGTTATGGATG
GAGCAACATCTTCTGTCTTCTTTGGGAAATATAATGAAACACAAGTTTGC
ATTAAACAATATAAACCAAATGTTGAAGTTCATGAAGTTTATAATGAAGC
ACAGATACTTTTATCACTTCCAGCATCAGAATATCTATGTTTTTTGGTGG
GAGTTTGTTTAGAGAGGCCACAACGATTGGTTACCAGTTTCTTCGGTTCA
GATTTTCCAGCAAGGAACACTTTGGACTACCATATTAAAAGCAAAACTGT
CTCTATTGCCAATACATTTTTTATCATAAGAAAGCTACTTGATGCAGTAA
GCTTTcttcacaaaaataatgtttttcacGGAGATATTAAACCTAACAAT
TTATTGGTTTTATTTGTCGATACGTTGAAGCTAAGGGTTATCGATTTTGG
ATGCAGTTCTTTCATTAGTGAGAGAGAAAATAAGATTTACAATGGTATCC
TAGAAGAAGAGAAGGAATCAATCTCTTTATTAATCAAATGCAACAAGCAT
ATTGCGCCTGAGGTACATTATGGCTATCCAAGAAGCAGCCTAACTGACAT
ATATGGTATTGGCTACACatcaaaaaaactcatttcaGTCAATCAAAGTA
TAACAACAAACAATAATAAGAGACTTTTTTCCCTAATACAAAAATGTTTA
CAATTAGATCCTTATAAAAGGCCTAGCATCCTTGAATTGCAAAGTGCCTT
GTAAATGTCTGCCCTACCTTCATCAGAATCAAAAGATGGCAAACAAGCTG
GTTATGCTAATGGATTAGATTTccttTCTCATCATTATGAAATTGACAAC
TCTGCCACCAGGCTGAAAATTAGTGAAATATATGAACACTTTTGCCAGTC
TTTCCCAAACACTTCTTTGAAAGCATTTGGTTCTACAGTCAAAAAAGCAT
TTccatttattgaaaagaaaaattccaATGGCTGTGCATATTATACAAAT
ATCAAAAGACATGTTGTTAAAGCTACAACACCTGATGAGAACCCTGATAG
CTCAATGCCAGATTTGCCAAAATGTATGTTCTTGGACAAAAAGTTGTTTT
CCGTTAACAAGCGCCATGTTATGGATGGAGCAACATCTTCTGTCTTCTTT
GGGAAATATAATGAAACACAAGTTTGCATTAAACAATATAAACCAAATGT
TGAAGTTCATGAAGTTTATAATGAAGCACAGATACTTTTATCACTTCCAG
CATCAGAATATCTATGTTTTTTGGTGGGAGTTTGTTTAGAGAGGCCACAA
CGATTGGTTACCAGTTTCTTCGGTTCAGATTTTCCAGCAAGGAACACTTT
GGACTACCATATTAAAAGCAAAACTGTCTCTATTGCCAATACATTTTTTA
TCATAAGAAAGCTACTTGATGCAGTAAGCTTTcttcacaaaaataatgtt
tttcacGGAGATATTAAACCTAACAATTTATTGGTTTTATTTGTCGATAC
GTTGAAGCTAAGGGTTATCGATTTTGGATGCAGTTCTTTCATTAGTGAGA
GAGAAAATAAGATTTACAATGGTATCCTAGAAGAAGAGAAGGAATCAATC
TCTTTATTAATCAAATGCAACAAGCATATTGCGCCTGAGGTACATTATGG
CTATCCAAGAAGCAGCCTAACTGACATATATGGTATTGGCTACACatcaa
aaaaactcatttcaGTCAATCAAAGTATAACAACAAACAATAATAAGAGA
CTTTTTTCCCTAATACAAAAATGTTTACAATTAGATCCTTATAAAAGGCC
TAGCATCCTTGAATTGCAAAGTGCCTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046780-exon-scaffold_117-1491911889:423085..423818 | TCONS_00046780-exon-scaffold_117-1491911889:423085..423818 | Clytia hemisphaerica | exon |
| TCONS_00046780-exon-scaffold_117-1510915933:423085..423818 | TCONS_00046780-exon-scaffold_117-1510915933:423085..423818 | Clytia hemisphaerica | exon |
| TCONS_00046780-exon-scaffold_117-1575043694:423085..423818 | TCONS_00046780-exon-scaffold_117-1575043694:423085..423818 | Clytia hemisphaerica | exon |
| TCONS_00046780-exon-scaffold_117-1491911889:424118..424317 | TCONS_00046780-exon-scaffold_117-1491911889:424118..424317 | Clytia hemisphaerica | exon |
| TCONS_00046780-exon-scaffold_117-1510915933:424118..424317 | TCONS_00046780-exon-scaffold_117-1510915933:424118..424317 | Clytia hemisphaerica | exon |
| TCONS_00046780-exon-scaffold_117-1575043694:424118..424317 | TCONS_00046780-exon-scaffold_117-1575043694:424118..424317 | Clytia hemisphaerica | exon |
| TCONS_00046780-exon-scaffold_117-1491911889:425377..426342 | TCONS_00046780-exon-scaffold_117-1491911889:425377..426342 | Clytia hemisphaerica | exon |
| TCONS_00046780-exon-scaffold_117-1510915933:425377..426342 | TCONS_00046780-exon-scaffold_117-1510915933:425377..426342 | Clytia hemisphaerica | exon |
| TCONS_00046780-exon-scaffold_117-1575043694:425377..426342 | TCONS_00046780-exon-scaffold_117-1575043694:425377..426342 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:423085..426342 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006468 | protein phosphorylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006468 |
protein phosphorylation |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0004672 |
protein kinase activity |
Blast
The following BLAST results are available for this feature:
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