|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046759 ID=TCONS_00046759|Name=TCONS_00046759|organism=Clytia hemisphaerica|type=transcript|length=4162bpRun BLAST on NCBI protein sequence of TCONS_00046759-protein >TCONS_00046759-protein ID=TCONS_00046759-protein|Name=TCONS_00046759-protein|organism=Clytia hemisphaerica|type=polypeptide|length=480bp MDIEKCFFIKNSVIFQKEEPVIRPSTANTSSTNRKKRILSPKHTALSSTRRun BLAST on NCBI transcript from alignment at scaffold_117:1007..26404+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046759 ID=TCONS_00046759|Name=TCONS_00046759|organism=Clytia hemisphaerica|type=transcript|length=25398bp|location=Sequence derived from alignment at scaffold_117:1007..26404+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_117:1007..26404+ >TCONS_00046759 ID=TCONS_00046759|Name=TCONS_00046759|organism=Clytia hemisphaerica|type=CDS|length=21645bp|location=Sequence derived from alignment at scaffold_117:1007..26404+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00046759 vs. Swiss-Prot (Human)
Match: VWA3A (von Willebrand factor A domain-containing protein 3A OS=Homo sapiens GN=VWA3A PE=2 SV=3) HSP 1 Score: 236.884 bits (603), Expect = 2.208e-63 Identity = 148/491 (30.14%), Postives = 246/491 (50.10%), Query Frame = 2
Query: 1022 EKCFFIKNS-------VIFQKEEPVIRPSTANTSSTNRKKRILSPKHTALSSTRLSLVRPSSCRQIKAQPVTNDNNNNKQKKSP-----WRPSTAHPTVS---ATPSSENGDTKKVNAKSKRNEATTDAHHIFYTEVGNNIGMV--RLPRKSPQSSPPSTISLPDNEEILSSKAWLRKYGLNNLNLLFEKVVSTGKCNHDRVPGLNKSIDARHCIVFPKVELKGVTYHVYSRLKELMTYELNVGKALRRYIKRLEWVLNDSHRVFGVLTEQNIVLVIDLSGSMVQHKANFDQQFTEMVWKQLYNTGKRFNVIVFSTDVTCWKNELMDTSKQNCKELIDWFYSLKCHGTTATMRALQTALSFEEVDAVYLLSDGKPDCSKSHVLRQIANTNMLTKKKIHSIAYHCANNEDSAFLKLLASQTKGRFHLFDGHHDIEEI---INTKLIQSNLPVSNTNESDDIRILLNEISNAKQYLQNCKTCLSSVENWQDGQ 2434
+KC F+ S V+ P +P T S + K++ P+ T R+S IK P +++K P WRP ++ +S A P+ E ++ K+K EA T +FYTE GN++G V + P+ S+I LP + + SS+ W+ KYGL L L + + C H + +S A+HC +FP VE+ GV H+ +E+ Y ++ K LRRY++RL+W+L+ S R+FG + E + +++D SGSM + + ++W+QL FN++ F+ W++ L++T+ C E + W L+ G+T+ ++AL A SF +++ +YLL+DGKPD S S VL ++ K+H+I+ +C++ FL+ LAS T GR+H G + +I + I P E DD+RIL EI+ A+ +L ++ S ++ D +
Sbjct: 712 QKCAFLMASLKNHSGKVLGSSALPKEKPKTLQLRS--QPKKLCPPRPTVPLGARMS---------IKDDP-------DREKSPPLKSLKWRPLSSRVGISPAAAQPTKEG--MMELRRKTKSREAETSLL-LFYTEKGNDVGSVYKKYPQGRGLRRTSSSIDLPRKDTVCSSQEWVAKYGLKKLKLEISRCMGPN-CTHQK--SGQRSASAKHCSIFPSVEIHGVVRHIQWTPREMEVYIRHLEKVLRRYVQRLQWLLSGSRRLFGTVLESKVCILLDTSGSMGPYLQQVKTELVLLIWEQLRKCCDSFNLLSFAESFQSWQDTLVETTDAACHEAMQWVTHLQAQGSTSILQALLKAFSFHDLEGLYLLTDGKPDTSCSLVLNEVQKLREKRDVKVHTISLNCSDRAAVEFLRKLASFTGGRYHCPVGEDTLSKIHSLLTKGFINEKDPTLPPFEGDDLRILAQEITKARSFLWQAQSFRSQLQKKNDAE 1178 HSP 2 Score: 102.064 bits (253), Expect = 1.296e-21 Identity = 92/387 (23.77%), Postives = 168/387 (43.41%), Query Frame = 2
Query: 1346 EATTDAHHIFYTEVGNNIGMVRLPRKSPQSSPPSTISLPDNEEILSSKAWLRKYGLNNLNLLFEKVVSTGKCN--HDRVPGLNKSIDAR-HCIVFPKVEL-KGVTYHVYSRLKELMTYELNVGKALRRYIKRLEWVLNDSHRVFGVLTEQNIVLVIDLSGSMVQHKANFDQQFTEMVWKQLYNTGKRFNVIVFSTDVTCWKNELMDTSKQNCKELIDWFYSLKCHGTTATMRALQTALS--FEEVD-----AVYLLSDGKPD-------------CSKSHV-----LRQIANTNMLTKKKIHSIAYHCANNEDSAFLKLLASQTKGRFHLFDGHHDIEEIINTKLIQSNLPVSNTNESDDIRILLNEISNAKQYLQNCKTCLSSVEN 2419
EA T TE+ N + LP K P+ P TI P+ ++ +S WL+ GL L +V++ + + VP L K++ + H + E G +++ L Y+ + +A+R Y +R+EW+ S R++G + E+ +V+++D+S + + + ++ +QL N FN+I F + + W+ E++ S N + W +L+C G+ + AL+ A+ F++ D +YL + G PD C + L + M T A + ++ + +A K + GRFH F + ESDDI +++E+ A Y Q C ++S++N
Sbjct: 364 EALTCTMEEISTEITNGPLISLLP-KPPKHDAPLTIEFPNLDK--TSAEWLKVNGLKAKKLSLYQVLAPNAFSPVEEFVPILQKTVSSTIHEKAMIQFEWHDGTVKNIHVDPPFLYKYQQQLSRAMRMYERRIEWLSLASRRIWGTVCEKRVVVLLDISATNSMYIIHIQHSLRLLLEEQLSNK-DCFNLIAFGSTIESWRPEMVPVSHNNLQSAWRWALNLRCRGSRNVLSALRKAVEVDFKDKDKHQSQGIYLFTGGIPDQDMPTLSAYMAEACGGCDLQLNVCLFYVGEPKMDTTPP----ARYASHTDTAAAYKEVTRAAGGRFHWFGD-------------------TGIYESDDINSIMSEMEKALNYSQKCAFLMASLKN 723 The following BLAST results are available for this feature:
BLAST of TCONS_00046759 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.