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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046755 ID=TCONS_00046755|Name=TCONS_00046755|organism=Clytia hemisphaerica|type=transcript|length=1096bp
TGTTGGTatcaatgattttgatttcgatGATAACCAAAGATGGAATCGTG
TTCTCCAAAGTCGTCCAAAGTTTCGAATCAGAACCTTACTGCACCGATCA
TTTTTATCGGGGAATTGAACCGAAATTTATACCAAAACCTAACTACCGTC
GAATTTGCCAAACGAAAGAAAGCATAAACACACGTAAGATATTCTACGCT
ACATTGTATGACACGAAACTTAAAATACCTGTTTACTCAGCTTATACATT
AGAGATCGGCGCGTCCCAGAAGCGGCCGAAGTGGATGGTCGAGCCACAGC
TGGAGAACAAAACACTAGGCGATGATATGGTGACTTCGAGATCTGTTAAC
AGGCTATACGAGTTCAAAACACAGGCTTCGGATCAAGATTACAAAGGCTA
tgggaaaatttattttctaacaAGAGGACATTTGAACCCAAACGCTTACC
ACGATGGTCGGGAAAGAATTGCCACTTTTTCTCTCACTAACATAGTACCC
CAGTATGATAAATTTAATAGCGGCTCATGGAATAAAGCTGAATCTACTGT
GAAAGAAATAATGGCAAAATATTGTTTCGGTAACCATGATCAGCGCACGT
TaccttatgttaaaaaataCGTGAATGCGGAAGCTTATTTCATTACCGGC
GCAGTACCGTCAGATCGCCCGTCAGATGTAATCGGTCGTAACGTTACAAT
CCCGAAGATGAGTTTTACGGCCGTATGCTGTACCGATCCTGTACGTCAAA
AGAAGTTCTCGTTCGGGTTTTACGGGTACAATGTACGGGATACACGACTA
CAGGGTACGCAAGCCGTTGATTTGTTTGAATTGCAAGATTTGTTGAACAA
GGAATGGCCTGGGAACAAGAAGACTGGGGCTCAGGATGTCTGGTTATTCG
AGGATGGGTGTGGAGCAGAGAATGGTCTCATCTATGTTAACGCAATGAAT
AGAAAATTGAACGGGAACAGAAAATCTCGTGGACGATATTGAACATTAct
ataaatttttgattttttctcccTTGAATAGACATGCCAACTTCAGCGGT
GCAAGGATATTTCGGACGTTGGTTTAAGATTGGATCTGGGGTTTTA Run BLAST on NCBI protein sequence of TCONS_00046755-protein >TCONS_00046755-protein ID=TCONS_00046755-protein|Name=TCONS_00046755-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
LVSMILISMITKDGIVFSKVVQSFESEPYCTDHFYRGIEPKFIPKPNYRR
ICQTKESINTRKIFYATLYDTKLKIPVYSAYTLEIGASQKRPKWMVEPQL
ENKTLGDDMVTSRSVNRLYEFKTQASDQDYKGYGKIYFLTRGHLNPNAYH
DGRERIATFSLTNIVPQYDKFNSGSWNKAESTVKEIMAKYCFGNHDQRTL
PYVKKYVNAEAYFITGAVPSDRPSDVIGRNVTIPKMSFTAVCCTDPVRQK
KFSFGFYGYNVRDTRLQGTQAVDLFELQDLLNKEWPGNKKTGAQDVWLFE
DGCGAENGLIYVNAMNRKLNGNRKSRGRY Run BLAST on NCBI transcript from alignment at scaffold_116:789538..790633 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046755 ID=TCONS_00046755|Name=TCONS_00046755|organism=Clytia hemisphaerica|type=transcript|length=1096bp|location=Sequence derived from alignment at scaffold_116:789538..790633 (Clytia hemisphaerica)
TAAAACCCCAGATCCAATCTTAAACCAACGTCCGAAATATCCTTGCACCG
CTGAAGTTGGCATGTCTATTCAAgggagaaaaaatcaaaaatttatagTA
ATGTTCAATATCGTCCACGAGATTTTCTGTTCCCGTTCAATTTTCTATTC
ATTGCGTTAACATAGATGAGACCATTCTCTGCTCCACACCCATCCTCGAA
TAACCAGACATCCTGAGCCCCAGTCTTCTTGTTCCCAGGCCATTCCTTGT
TCAACAAATCTTGCAATTCAAACAAATCAACGGCTTGCGTACCCTGTAGT
CGTGTATCCCGTACATTGTACCCGTAAAACCCGAACGAGAACTTCTTTTG
ACGTACAGGATCGGTACAGCATACGGCCGTAAAACTCATCTTCGGGATTG
TAACGTTACGACCGATTACATCTGACGGGCGATCTGACGGTACTGCGCCG
GTAATGAAATAAGCTTCCGCATTCACGtattttttaacataaggtAACGT
GCGCTGATCATGGTTACCGAAACAATATTTTGCCATTATTTCTTTCACAG
TAGATTCAGCTTTATTCCATGAGCCGCTATTAAATTTATCATACTGGGGT
ACTATGTTAGTGAGAGAAAAAGTGGCAATTCTTTCCCGACCATCGTGGTA
AGCGTTTGGGTTCAAATGTCCTCTtgttagaaaataaattttcccaTAGC
CTTTGTAATCTTGATCCGAAGCCTGTGTTTTGAACTCGTATAGCCTGTTA
ACAGATCTCGAAGTCACCATATCATCGCCTAGTGTTTTGTTCTCCAGCTG
TGGCTCGACCATCCACTTCGGCCGCTTCTGGGACGCGCCGATCTCTAATG
TATAAGCTGAGTAAACAGGTATTTTAAGTTTCGTGTCATACAATGTAGCG
TAGAATATCTTACGTGTGTTTATGCTTTCTTTCGTTTGGCAAATTCGACG
GTAGTTAGGTTTTGGTATAAATTTCGGTTCAATTCCCCGATAAAAATGAT
CGGTGCAGTAAGGTTCTGATTCGAAACTTTGGACGACTTTGGAGAACACG
ATTCCATCTTTGGTTATCatcgaaatcaaaatcattgatACCAACA Coding sequence (CDS) from alignment at scaffold_116:789538..790633 >TCONS_00046755 ID=TCONS_00046755|Name=TCONS_00046755|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_116:789538..790633 (Clytia hemisphaerica)
TCAATATCGTCCACGAGATTTTCTGTTCCCGTTCAATTTTCTATTCATTG
CGTTAACATAGATGAGACCATTCTCTGCTCCACACCCATCCTCGAATAAC
CAGACATCCTGAGCCCCAGTCTTCTTGTTCCCAGGCCATTCCTTGTTCAA
CAAATCTTGCAATTCAAACAAATCAACGGCTTGCGTACCCTGTAGTCGTG
TATCCCGTACATTGTACCCGTAAAACCCGAACGAGAACTTCTTTTGACGT
ACAGGATCGGTACAGCATACGGCCGTAAAACTCATCTTCGGGATTGTAAC
GTTACGACCGATTACATCTGACGGGCGATCTGACGGTACTGCGCCGGTAA
TGAAATAAGCTTCCGCATTCACGtattttttaacataaggtAACGTGCGC
TGATCATGGTTACCGAAACAATATTTTGCCATTATTTCTTTCACAGTAGA
TTCAGCTTTATTCCATGAGCCGCTATTAAATTTATCATACTGGGGTACTA
TGTTAGTGAGAGAAAAAGTGGCAATTCTTTCCCGACCATCGTGGTAAGCG
TTTGGGTTCAAATGTCCTCTtgttagaaaataaattttcccaTAGCCTTT
GTAATCTTGATCCGAAGCCTGTGTTTTGAACTCGTATAGCCTGTTAACAG
ATCTCGAAGTCACCATATCATCGCCTAGTGTTTTGTTCTCCAGCTGTGGC
TCGACCATCCACTTCGGCCGCTTCTGGGACGCGCCGATCTCTAATGTATA
AGCTGAGTAAACAGGTATTTTAAGTTTCGTGTCATACAATGTAGCGTAGA
ATATCTTACGTGTGTTTATGCTTTCTTTCGTTTGGCAAATTCGACGGTAG
TTAGGTTTTGGTATAAATTTCGGTTCAATTCCCCGATAAAAATGATCGGT
GCAGTAAGGTTCTGATTCGAAACTTTGGACGACTTTGGAGAACACGATTC
CATCTTTGGTTATCatcgaaatcaaaatcattgatACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046755-exon-scaffold_116-1491911889:789538..790633 | TCONS_00046755-exon-scaffold_116-1491911889:789538..790633 | Clytia hemisphaerica | exon |
| TCONS_00046755-exon-scaffold_116-1510915933:789538..790633 | TCONS_00046755-exon-scaffold_116-1510915933:789538..790633 | Clytia hemisphaerica | exon |
| TCONS_00046755-exon-scaffold_116-1575043694:789538..790633 | TCONS_00046755-exon-scaffold_116-1575043694:789538..790633 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:789538..790633 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001604 | DNA/RNA_non-sp_Endonuclease |
| IPR020821 | Extracellular_endonuc_su_A |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016787 | hydrolase activity |
| GO:0003676 | nucleic acid binding |
| GO:0046872 | metal ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016787 |
hydrolase activity |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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