TCONS_00046734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046734
Unique NameTCONS_00046734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046734 ID=TCONS_00046734|Name=TCONS_00046734|organism=Clytia hemisphaerica|type=transcript|length=353bp
CTGGCTTCATGCCCACGTATCACCAATCTACAAAGGTGGAAACAAAGACC
GCTGCTCGCCAGAGAACTACCGACCAGTCTCACTAACGAGCATTTCATGT
AAAACATTAGAACACATCATATATAGCAACATCATTAAACATCTTAACAA
ACACAATGCCATCACTTAGGTCCAACACGGTTTTAGAGAGAAAAGGTCAT
GCGAATCGCAACTGCTTATCGCTGTCAATGATTTTGCCAAAGCTCTCAAC
AACGGGGATCAGATGGACACCATATTGCTAGATTTCAGCAAAGCTTTTGA
CAAAGTTGATCATCGAAAACTTTGCCTCAAACTCGCCCACTACGGTATCA
AGG
Run BLAST on NCBI

transcript from alignment at scaffold_116:287761..288113

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046734 ID=TCONS_00046734|Name=TCONS_00046734|organism=Clytia hemisphaerica|type=transcript|length=353bp|location=Sequence derived from alignment at scaffold_116:287761..288113 (Clytia hemisphaerica)
CCTTGATACCGTAGTGGGCGAGTTTGAGGCAAAGTTTTCGATGATCAACT
TTGTCAAAAGCTTTGCTGAAATCTAGCAATATGGTGTCCATCTGATCCCC
GTTGTTGAGAGCTTTGGCAAAATCATTGACAGCGATAAGCAGTTGCGATT
CGCATGACCTTTTCTCTCTAAAACCGTGTTGGACCTAAGTGATGGCATTG
TGTTTGTTAAGATGTTTAATGATGTTGCTATATATGATGTGTTCTAATGT
TTTACATGAAATGCTCGTTAGTGAGACTGGTCGGTAGTTCTCTGGCGAGC
AGCGGTCTTTGTTTCCACCTTTGTAGATTGGTGATACGTGGGCATGAAGC
CAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029819XLOC_029819Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046734-exon-scaffold_116-1491911889:287761..288113TCONS_00046734-exon-scaffold_116-1491911889:287761..288113Clytia hemisphaericaexon
TCONS_00046734-exon-scaffold_116-1510915933:287761..288113TCONS_00046734-exon-scaffold_116-1510915933:287761..288113Clytia hemisphaericaexon
TCONS_00046734-exon-scaffold_116-1575043694:287761..288113TCONS_00046734-exon-scaffold_116-1575043694:287761..288113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:287761..288113 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.205203	0	0	0.9683	1.53333	1.67948	3.05966	0.750443	2.87517	0.812974	2.68407	0.729097	0	0.870971	0.31799	0.259762	0.739612	0.620559	1.12342	0.277727	1.34195	0	0.0843673	0	0.478114	0.661593	0.244749	0.520209	0.420164
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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