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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046717 ID=TCONS_00046717|Name=TCONS_00046717|organism=Clytia hemisphaerica|type=transcript|length=2594bpRun BLAST on NCBI protein sequence of TCONS_00046717-protein >TCONS_00046717-protein ID=TCONS_00046717-protein|Name=TCONS_00046717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp MDNKMADKTVTTCASMLYALFQKRKRKCSCLCHTATNKNTDVAELNANKFRun BLAST on NCBI transcript from alignment at scaffold_116:625484..638072- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046717 ID=TCONS_00046717|Name=TCONS_00046717|organism=Clytia hemisphaerica|type=transcript|length=12589bp|location=Sequence derived from alignment at scaffold_116:625484..638072- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_116:625484..638072- >TCONS_00046717 ID=TCONS_00046717|Name=TCONS_00046717|organism=Clytia hemisphaerica|type=CDS|length=15540bp|location=Sequence derived from alignment at scaffold_116:625484..638072- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00046717 vs. Swiss-Prot (Human)
Match: KSR1 (Kinase suppressor of Ras 1 OS=Homo sapiens GN=KSR1 PE=1 SV=3) HSP 1 Score: 160.229 bits (404), Expect = 3.541e-40 Identity = 95/278 (34.17%), Postives = 145/278 (52.16%), Query Frame = 2
Query: 671 EWSIPYTNIEFGEKVAVSPNGPVHRGRWHGDVMVYM--QANHDENKLDEFLDEVSLLGLIRHENVVLFMGASIEPPNLAVVTSVRKGHTLHHHLHIKQTAFHFGSKFSIAKQIAQGMGYLQAKGITLGKLCSRNVFLE-AKVKI---GITEYTTTTQPTVKSGCGFLPDGHLAYISPELMRTLKLCGIYYLTDKPDTPKADVYAYGTLLYEIFLGRHPYKGLEPQTLIWKVSKGHVASVDATDFPL--VFKGLIQSCWQQRIEKRPEFQEIINNMKKI 1480
EW IP+ +E GE + G VHRGRWHG+V + + H+++ L F EV RHENVVLFMGA + PP+LA++TS KG TLH + +T+ IA++I +GMGYL AKGI L S+NVF + KV I G+ + + + L L Y++PE++R ++ P + ADVYA+GT+ YE+ P K + IW++ G T L ++ +CW +++RP F +++ ++K+
Sbjct: 605 EWDIPFEQVELGEPIGQGRWGRVHRGRWHGEVAIRLLEMDGHNQDHLKLFKKEVMNYRQTRHENVVLFMGACMNPPHLAIITSFCKGRTLHSFVRDPKTSLDINKTRQIAQEIIKGMGYLHAKGIVHKDLKSKNVFYDNGKVVITDFGLFGISGVVREGRRENQLKLSHDWLCYLAPEIVR--EMTPGKDEDQLPFSKAADVYAFGTVWYELQARDWPLKNQAAEASIWQIGSGEGMKRVLTSVSLGKEVSEILSACWAFDLQERPSFSLLMDMLEKL 880 The following BLAST results are available for this feature:
BLAST of TCONS_00046717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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