TCONS_00046709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046709
Unique NameTCONS_00046709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1065

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046709 ID=TCONS_00046709|Name=TCONS_00046709|organism=Clytia hemisphaerica|type=transcript|length=1065bp
CTTTTACTCCTTTTAAACCTCTTTAAAGTAAATATTATTGAAATCTTGat
aattttaatttgaaataatagCTACTTTAGGGCTAATATATTTCTTCAAA
TGAAAACTGCTCTTTTATTTCGTGcttTGGAGATTTGAAACATGTCAATA
ACTATCAAAGGAAAGATTAGATTCGCTTCCCCTCCTTTAACCATCCCAGA
TGGATCTTTGCTAAAAGTTAAGTTTCAAGATACAGGTCGCATGGATGCTC
CATCAATCGATTTGGGAGTTTATGAGAAAGTCATTGAGAGTTATAAAACT
GGGGATGAAATCACTTATGAAATCAAATGTAATCGACCAAACTGCTTCGG
TACTTCAatgaGTGCTGTTTTAAACATTGGCTGGAAGGCTTCTGGTAGTG
AATGGATAAGAAAAGGGGATCACTTGAATGACACGCACCATGACATCGAT
GTTGGAAATGCTAGTCAGGTTGTTTTTGAGAAAGATATTGAAATCATCCA
TTACAAATGAATGTGCTCATAAATAAATTCAGATTGTCAATTAAGGCAAT
AGCACGCAATATACTTTCAATGGGGGATACAGAAATTCAAAACTAGGAAC
TGTATTTtgtttgctagtaaactggaaAAAATTATGAAGAATTAGAgaca
tttttttgttatttaagTAAGAGAAATAATATTCACAATTACAGCATTTT
CAAAGTGCTCTGGGGTTGCATACAGTACGTCATAATTGTTTTAGCTTAAG
CTTTATGACTTTAAATCATACagtttattttgaaatgatttgaaagcagt
ataattattactttttattatATACAGTATATCTAAAACGTGCTATATCA
ATTAACACAAAGGCGGATGAGATTGAAAGTGGTACAAACTTACAGATTTA
TGCTTTTTTTTagattcgatatttttttcacTGTCATGTGTTATTGGAAA
CCCATGCTTACTAAATCTAAATGGAATAAGATTGATAAAAAAGTCCAAAT
GAATTGGACTAAAATAGTTTCTTCTACAGAGATTTTTTAAAGTGTTTTCA
AGATTCAGTTTATTG
Run BLAST on NCBI

protein sequence of TCONS_00046709-protein

>TCONS_00046709-protein ID=TCONS_00046709-protein|Name=TCONS_00046709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MSITIKGKIRFASPPLTIPDGSLLKVKFQDTGRMDAPSIDLGVYEKVIES
YKTGDEITYEIKCNRPNCFGTSMSAVLNIGWKASGSEWIRKGDHLNDTHH
DIDVGNASQVVFEKDIEIIHYK
Run BLAST on NCBI

transcript from alignment at scaffold_116:490715..495338-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046709 ID=TCONS_00046709|Name=TCONS_00046709|organism=Clytia hemisphaerica|type=transcript|length=4624bp|location=Sequence derived from alignment at scaffold_116:490715..495338- (Clytia hemisphaerica)
CTTTTACTCCTTTTAAACCTCTTTAAAGTAAATATTATTGAAATCTTGAT
AATTTTAATTTGAAATAATAGCTACTTTAGGGCTAATATATTTCTTCAAA
TGAAAACTGCTCTTTTATTTCGTGGTAAGTTAATTACTACACTACACTTT
GTTTACATCGAATAAATCAAAATGGTATCTTAAAAGTGGGGTGTGTTTAT
TTTGATTTCTTTCACTTTCTTTTTCCAGTGCTTTGTGTTGTTGTCAGGAT
TTTTCTTTTCCAGCTTTGGAGATTTGAAACATGTCAATAACTATCAAAGG
AAAGATTAGATTCGCTTCCCCTCCTTTAACCATCCCAGATGGATCTTTGC
TAAAAGTTAAGTTTCAAGATACAGGTCGCATGGATGCTCCATCAATCGAT
TTGGGAGTTTATGAGAAAGTCATTGAGAGTTATAAAACTGGGGATGAAAT
CACTTATGAAATCAAATGTAATCGACCAAACTGCTTCGGTACTTCAGTAA
GTCCGCCACTTTTACTTTCTTTATGTCATATTTTCATAAAACTAATATAA
TACTAAAAGTAAAAAAAAAAAAATTTAAAACAACCCGAAACACAGTTAGG
AACATTTGGCAAGTTCCTGTACGCGGTNCCAGATTTATTCAGATAAAGCT
ATAAGAGGTTCATTACTTGTGGGTTTTAAAACCTACATGAGCAAAAACGA
AAGTTGTTGGGAAGGAAAGAGTAAACGCAATACAGAAGGTTTGGTTGTGT
TGATCAGGTATGTTTTTATTCTATCCGAACTAATGTTAAAAAAGACCAAA
GAGGTCCTGACTGACGGTGGAGTGCATGACGTAACTCGCGCGGCAACAAA
CTCGCCTTCTGTTGGCTGGTCATATTGGGCGTTTTGGCGTTACCACCCTC
GAAGCAGTGGGCGCATTCGTCATTCCGCAACTCTGTCCACCATTTTAAAT
GAGTTAACAATAGATCCAAAAGGGCGCCCTCATCAAGAAAGATTATTTGC
TATGGTCTCCGGCTTTGGAAAGCAGTAATGTTTTCGATTGTTTTCGATGG
AAAATGGTAAGAAACTTAAGTTTACAAGTGTCATTCAGNNNACCAAAAAC
ATTGCTACTTCCCAAAGCCGGAGACCAAAACAAATTATCTTCCAAGATTA
TGGCGCCCTTTTGGATCTATTGTTAAGGCCATATAAAATGGTGGAAAGAG
TTGCGGAAAGACAAAGGCGCTCGCTGCGTCGAGGGTGGTAACGCCAAAAC
GCCCAATATGATCTACCAACAGAAGGCGAGGTAGTTGCCGCGCGAGTTAC
GTCACGCACTCCACCGCAGCGCATAACGAAGTGTGTATAAATGAATATCA
TTAATTATAAGAATATCTCATGTGCTTACTTTCAGTAAACTTCGAGTGCT
TCATTAAAGATGAAGAAAGTAAGAAGATAAAAAATGCGCTGGATAATTTT
CATTGTAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTGAAAGTTTGAAAAAGTTTTTCCGACGCAAAAGAAATTGTC
AGCCAATTAAAAGCACAGTGTGCTTATACTTACTATGTTTGCTACATTGT
CTAGGCTAAAAACAGTGCGAAAAGACACGAACGCCATTTTTTATTGAGTG
ACGTTATGATTTTTTTGATTGCGGCCGCGTACAGGAACTCGCCAAATGTT
CCTAACTGAGTTTTTGCTGGCTGATAGAATGGCAGGATCCTGGATGGTTT
CCCTAACTGAAACAACTCAACACTTGTTTTGATCTAGTAATATTGGTTTA
ATGTTGACATCTCTCATCTTATTCCGACACCATTCTTTAAACTTTGGAAT
AAAAGCACACCACTATGCAAACGTCATAATTATTACTTTTAACATTTGAC
CAAAATTCAATCCCACAACTCCTCATCTTGATTTGCATCGTAAGTTGGTC
TAATGACTAATGTCGACATCCCTTTTCTAATTTCAACACCCTTCTTTAGA
GATGTATAAGAATAATACGAAGGTCGGAATCACTGATTGAAACTAATCTT
TGTTGCTTAGCGATCAGAGTGGAGTAAATCCTTTGTCTATCAGTGATTTT
GACCTACCTATTATCCACATTTCTCTAGACAGCTCAAGACAGTCTTAACT
CACCACGGAAAAAAATGTTGTACATTATATGTAGGTTTTTAATCGGCGCG
CATTATAATGTAGTACATTAAAAATTGTTCAAAGACCTTTCTACACTCAA
ATAAATAAAAGAAAGACTCTTCTACACTTTACAGATTTAACCATTTCCCT
TTTAAGTTGGTGCTCATCCATTCCAGATCATCTAAATAATGACGCAATGT
TTCGAGCTCCACCCCTGACCCTAACTAATAATATTGAAATAATCAAAAAT
CGAAGATATCGAAAAGGTCAAAAAGGAAGAATAAAAAAAGTCTACTTTTG
GCCGTCCACAACCCCGACCTAAAAGTGACTGAACTACCCCCATAGAAAAA
CAATGATAAAACCATGCATAATTATTACAATATGCATGATACAGTATGCA
TGATATGCAAGTTTTATTATTTTTGTATTGTCAACAAAGTGTAATTGACT
TGCAAAAGCAATTAATGCAAAGGATGAGATGATGGGATTGAAACTCAGAC
AAACAGTAATTTTGATGTCTATTTTTAGAATCACTGCGATACCGTGAGAT
CGGGTAACTTGCATCAGTGGAGGCTAATATGCATAGCCCTCAAATGAATG
ACCTGTCTGGTCATTAAAATACAACTACACAGCTCCGCTCACAGCTCTAA
TCTACCATTTTTGTTTTGATTTAACTTTGTATTTTAATGACCAGCAACGT
CTTTCATTTGAGGGCTATGCATGTTAGCCTCCACCGATGCAAGTTACCCG
ATCTCACGGTATGCTATTGAAAGGTCAGAATCCCTGTGCCTGTCCGCTAA
TAAACGAACAGAGAGGTCTTTTTTTCAATCAGTGATTCTGACCTTCCTTT
AATTTCTATAAGCTAAGGCAGGGTTCACTCACATATCAATGTTTCCCATG
ACTAACGTCAAATTGACGTGGGAGGGCGGAGGGGTCTGACGTTAGTTGAG
GAATGTTGACATCAACTTACTGTAATTTCCATCCAGACTTTTTCAATCAA
TAAAACTGTCTGGTGTTTTTGTGTAGTGCCAAAAAGTGTAGTCCTTTAGG
AGAATGCAACAGTCTATTGAATAACAAATTACACCAGTATACATTATTTT
CCCTAAGCCAATATAAACGGGTGATAGATTATCTTATTGTCCCTGTAGAT
AACAGCTGTCAGGCTGTGTTGTAATAGACAAATCAATTATATAATCTTAT
CATTAAAACAAAATAAATTTTGGAGTAATCACAAATTAGTTATTCAAAAG
ATTGCATTCTCTCAAACGACTATTATTTGATTATATGATTCTGGATACTG
GACTAGACACTTTTCCGGTGGGAAAAAGTTTTAACATCAGACATACCTAC
GTACTATTGCATACTAATTATGTATGGTGTTTGGATTGTCAAGTGACAAA
ATGTTTTCTCATTTAACACTAAGCAGTGTCAGCAGGGTTGTAACTCAATC
TTTAACCATTATTACAATTATTAGTAATTTTTACTTAAAATCTTTTAAAA
TCTTTTTCTATTTTAGATGAGTGCTGTTTTAAACATTGGCTGGAAGGCTT
CTGGTAGTGAATGGATAAGAAAAGGGGATCACTTGAATGACACGCACCAT
GACATCGATGTTGGAAATGCTAGTCAGGTTGTTTTTGAGAAAGATATTGA
AATCATCCATTACAAATGAATGTGCTCATAAATAAATTCAGATTGTCAAT
TAAGGCAATAGCACGCAATATACTTTCAATGGGGGATACAGAAATTCAAA
ACTAGGAACTGTATTTTGTTTGCTAGTAAACTGGAAAAAATTATGAAGAA
TTAGAGACATTTTTTTGTTATTTAAGTAAGAGAAATAATATTCACAATTA
CAGCATTTTCAAAGTGCTCTGGGGTTGCATACAGTACGTCATAATTGTTT
TAGCTTAAGCTTTATGACTTTAAATCATACAGTTTATTTTGAAATGATTT
GAAAGCAGTATAATTATTACTTTTTATTATATACAGTATATCTAAAACGT
GCTATATCAATTAACACAAAGGCGGATGAGATTGAAAGTGGTACAAACTT
ACAGATTTATGCTTTTTTTTAGATTCGATATTTTTTTCACTGTCATGTGT
TATTGGAAACCCATGCTTACTAAATCTAAATGGAATAAGATTGATAAAAA
AGTCCAAATGAATTGGACTAAAATAGTTTCTTCTACAGAGATTTTTTAAA
GTGTTTTCAAGATTCAGTTTATTG

Coding sequence (CDS) from alignment at scaffold_116:490715..495338-

>TCONS_00046709 ID=TCONS_00046709|Name=TCONS_00046709|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_116:490715..495338- (Clytia hemisphaerica)
ATGAGTGCTGTTTTAAACATTGGCTGGAAGGCTTCTGGTAGTGAATGGAT
AAGAAAAGGGGATCACTTGAATGACACGCACCATGACATCGATGTTGGAA
ATGCTAGTCAGGTTGTTTTTGAGAAAGATATTGAAATCATCCATTACAAA
TGAATGTCAATAACTATCAAAGGAAAGATTAGATTCGCTTCCCCTCCTTT
AACCATCCCAGATGGATCTTTGCTAAAAGTTAAGTTTCAAGATACAGGTC
GCATGGATGCTCCATCAATCGATTTGGGAGTTTATGAGAAAGTCATTGAG
AGTTATAAAACTGGGGATGAAATCACTTATGAAATCAAATGTAATCGACC
AAACTGCTTCGGTACTTCAATGAGTGCTGTTTTAAACATTGGCTGGAAGG
CTTCTGGTAGTGAATGGATAAGAAAAGGGGATCACTTGAATGACACGCAC
CATGACATCGATGTTGGAAATGCTAGTCAGGTTGTTTTTGAGAAAGATAT
TGAAATCATCCATTACAAATGAATGTCAATAACTATCAAAGGAAAGATTA
GATTCGCTTCCCCTCCTTTAACCATCCCAGATGGATCTTTGCTAAAAGTT
AAGTTTCAAGATACAGGTCGCATGGATGCTCCATCAATCGATTTGGGAGT
TTATGAGAAAGTCATTGAGAGTTATAAAACTGGGGATGAAATCACTTATG
AAATCAAATGTAATCGACCAAACTGCTTCGGTACTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029801XLOC_029801Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046709-proteinTCONS_00046709-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046709-exon-scaffold_116-1575043694:495215..495338TCONS_00046709-exon-scaffold_116-1575043694:495215..495338Clytia hemisphaericaexon
TCONS_00046709-exon-scaffold_116-1575043694:494843..495075TCONS_00046709-exon-scaffold_116-1575043694:494843..495075Clytia hemisphaericaexon
TCONS_00046709-exon-scaffold_116-1575043694:490715..491422TCONS_00046709-exon-scaffold_116-1575043694:490715..491422Clytia hemisphaericaexon
TCONS_00046709-exon-scaffold_116-1510915933:495215..495338TCONS_00046709-exon-scaffold_116-1510915933:495215..495338Clytia hemisphaericaexon
TCONS_00046709-exon-scaffold_116-1510915933:494843..495075TCONS_00046709-exon-scaffold_116-1510915933:494843..495075Clytia hemisphaericaexon
TCONS_00046709-exon-scaffold_116-1510915933:490715..491422TCONS_00046709-exon-scaffold_116-1510915933:490715..491422Clytia hemisphaericaexon
TCONS_00046709-exon-scaffold_116-1491911889:495215..495338TCONS_00046709-exon-scaffold_116-1491911889:495215..495338Clytia hemisphaericaexon
TCONS_00046709-exon-scaffold_116-1491911889:494843..495075TCONS_00046709-exon-scaffold_116-1491911889:494843..495075Clytia hemisphaericaexon
TCONS_00046709-exon-scaffold_116-1491911889:490715..491422TCONS_00046709-exon-scaffold_116-1491911889:490715..491422Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:490715..495338 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.4012	36.9228	11.0226	11.8778	57.1451	43.9356	57.8838	63.3249	12.2006	21.1361	9.1847	10.2805	16.8379	14.4785	8.35142	10.278	31.6574	17.074	22.7988	25.5117	27.2104	24.924	35.2747	26.6597	29.0576	30.9584	25.0885	23.6827	24.0216	28.769
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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