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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046705 ID=TCONS_00046705|Name=TCONS_00046705|organism=Clytia hemisphaerica|type=transcript|length=3354bp
CACACAGTTTGCATTTTTATCCTGTccataaaagaaaatttttgttgttt
gacgatttttattttatttcgctTTAAATGTTGGATAAGTATGGCTGGTA
TTGCTCATAGGATATCGTTGTTGCAACCAAAACCAATAGACCCAAATAAA
TGTACTAAAGGGAGGTCATTGTATGGACAGATTTTGGGAAATGTCCAAAC
CATATCAAAACATCAAGACAAGCAATATCATTTGGGGAATaatcaaagtt
ttgaaagcCCAATCCAAGCAGCTGAATACCTCTTGAGAAGAGAATATGGC
GATACTTCACTTTTTCATCATGACAAACATCAAAGTGTATTCATACCACC
AGTCTTCAGTTCCAGTCAGTTCAACGATAAAGAATCAACCACCAACATCC
TTGATTATGATGTTAGGAAAGATTTGACAAGGCTTGCTGACAATCTTAAC
CAATCTTCGCCTGATTACTGGTTAACTAATGAATTGCACTTGTTTGTACA
ATCGCAAAAAAGTGGacattttattgataagaatTTGTTCGATCAATGGA
TCCTCAATCTCAAAATGATGTATCTTGTTGCCAAAGAGCTTCAAAGTGGA
GACTTTAAACTACCATCGATACTGGCTGATCGTACTGCGTTTGTCCAAGG
CTGTCTTGAAGTACTTACAGCTCGTAGTTTAGAAAATGCTGACTCAACAT
CAACAGCTGAATCTGATTTAAGAACTGTGCTCACAGATTTTACATCGCAA
AAGTCAGAGAAGTTTCTTAAACGTGATGTTTTATCATTGATTCGAGAGAG
TCCGCCACAAGACCCCAATCTTAACTGGATTTTTGGTTTAGAATTGGCAA
CAATTGGTGAACGTCTAGAGCATTGGTTTTTCGGTCAACTCTTACTCTTA
AAAGATGACATTCTTAAGGACACTGTTGTTCTTTCATCTGTCAACTTTAT
GACAAATGTTCGGAATAAAAAACATCGTGAATTAGATTCTCTTATAATTT
CTTGGTCAAGAAAACTCATCATATCCGTTGAAATGAAGCTCAGTTTAAAG
GATGAGAAAGTTTTCGATCAATTGGATCAAAACCATCAAATCTTTGAAGA
AAGGCTAGGTGACCGATTTCAGCCTGGATGGACATTCTATCCGTTAGTGG
TTGTCGAGCATACAGACTCCTTCTCCACAGATAATCTACATTTCATGACC
ACCGAAACTGAAGTAAAATCAAGACTGGAGAATATATTTCGTTTATTCCC
AGTTATCCCTTTGGCTGAGAATTCGACCCCGATTGAGGACGTCAAACAGC
TGTTACAAGTTATTATATTTGCAGTTCATGTGTCAAAGAAACAACAAGTG
GCGCCTATTACCAACTCAAACTGGGTGGAATATATCAGAAACGCTATTGA
CAACGTATCAACCAGTAAAAACATCATCTTTTACTCTAACCAGCAAATGA
ACCTATTGAATAATCCCCATTCTAACAAACTCATCATCCTCGGGGCTTGG
GGTACAGGAAAGACGATCATGCTCAANTATTAAATAATCCCCATTCTAAC
AAACTCATCATCCTCGGGGCTTGGGGTACAGGAAAGACGATCATGCTCAA
ACAAAAAGCTATTCAGCTAGACCAAAGTGCAGAATTTCAAGGAAAGATCT
TGTATATCCTTGGCAATTGGCTTTATGGTGTTATCCCACCCACGATGCTT
TATCACCGCACAAACTTTGAGTTAAAGGACTATCAACGGATAAACATCAT
TGAAATCAATGAAGCGGATGAAAATATCTGTCAAGAAATCGTACAATACA
TTACAGACAACGACATCAAAGCAGTGTTTATGGATGAGTTTTTCATGTTA
AGAGAAGGTGCAACGATCGTTgaaaatatcatgaatatggtTGAAGTATG
TTGGATTATACCATGCCCTATTTCagcaaacaaaaataattttaaagaat
gGGAAAATGATTTTAAGACTTTAACGCTTCAAAAGAACTTTCGAAATAGT
caagaaattacaaaaatggTTAAATCGTTTGCTGAAGAAGTGAAATTTGG
TTATATGACCGGGTTACCTTCTTCTTTACCAAATTTCCCGTGTGGGAAAA
CCCCTCTCAATGTTGATTCGTTTCAAGAAGCAATGACCGAAGCTCGGAAG
TTAACTAAACAAGGTATTCTGgtcataatgcataatattacCAGAGATGT
CCGGGAGATCTTAAACACATCAAATGAAACATGGAAGATTTATACTTACC
AACAAAATGATTTTTTGGATCCTGAAGATCCAAATCCCTATCAATTTCTT
TTGGATGGAAACGTTTTGTTTGCTgattcacaaaaattaaatggCTTTGA
ATGGCAAACAGTTATATTGGTTGGTACATGGGTTAATAGGATGAAAATAA
CGCACCATGGTTGTAACTATATGATGAGATGTACCACAAATTTAATCATT
GTTGGTGACCACAATAATGCACCCCATTTTATTGTCGGTTGAAATGACCT
TTTTTTGGTAAATATCGCGTATTTAGTATTGAGCTCTTCCCGAAGTTCTt
tcccaactggcacacaacgttgtttcaacgttcacctaacgttcacaacg
tctatttaacgttagatgaacgttgaaacaacgttgtgtgctagctgggt
tTCTCGTCCtcagtgttgcaacttttccgtctgtagacggatatccgtcc
agttgagatacaaatatatcatttccgtcttgccagtaagagggtttttg
gttcaaatgacCATCTAATCCTAAGGTTTCCGTCCATATTCACAAAACCT
ATTTGCAACACTGCGTCCTTAATAAGTAAAGCTTTTAGAAACAATAATAA
GGAAATATCTGACGGTTTGAAAACAAACAAGTTTCAATAACATCAAAATA
TGAattcttttaactttttgaggctTCCTACCTACCTTAAAAGCCAAGAA
GAACATCCTAAAGCCTGAAATTTCTAACATTCTTCGAATGAGTGattaaa
aattcctttttcaaaagttgattttattagaatattttaaatttacaaTT
GATTAATCGTTAGTATTATTTtaaaatcatattttatgaGAAAATTCATA
AGATTTGTTTGCATATTTTTTTCATCCTAATAAATGATTTTATGTAGTGG
ATTACTTATATTTCACTGTCGGACAttaattttgttgattttaagacaac
attttataatatcgatttattatattttattttcttgattttatggacat
tgttttttttgtcaaagtttctttcagatttttacaccaaattattcaaa
atatttttacccgaaataatttttaaataaaatatatttttcctcacttt
ttat Run BLAST on NCBI protein sequence of TCONS_00046705-protein >TCONS_00046705-protein ID=TCONS_00046705-protein|Name=TCONS_00046705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
HTVCIFILSIKENFCCLTIFILFRFKCWISMAGIAHRISLLQPKPIDPNK
CTKGRSLYGQILGNVQTISKHQDKQYHLGNNQSFESPIQAAEYLLRREYG
DTSLFHHDKHQSVFIPPVFSSSQFNDKESTTNILDYDVRKDLTRLADNLN
QSSPDYWLTNELHLFVQSQKSGHFIDKNLFDQWILNLKMMYLVAKELQSG
DFKLPSILADRTAFVQGCLEVLTARSLENADSTSTAESDLRTVLTDFTSQ
KSEKFLKRDVLSLIRESPPQDPNLNWIFGLELATIGERLEHWFFGQLLLL
KDDILKDTVVLSSVNFMTNVRNKKHRELDSLIISWSRKLIISVEMKLSLK
DEKVFDQLDQNHQIFEERLGDRFQPGWTFYPLVVVEHTDSFSTDNLHFMT
TETEVKSRLENIFRLFPVIPLAENSTPIEDVKQLLQVIIFAVHVSKKQQV
APITNSNWVEYIRNAIDNVSTSKNIIFYSNQQMNLLNNPHSNKLIILGAW
GTGKTIMLXY Run BLAST on NCBI transcript from alignment at scaffold_116:391374..395326- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046705 ID=TCONS_00046705|Name=TCONS_00046705|organism=Clytia hemisphaerica|type=transcript|length=3953bp|location=Sequence derived from alignment at scaffold_116:391374..395326- (Clytia hemisphaerica)
CACACAGTTTGCATTTTTATCCTGTCCATAAAAGAAAATTTTTGTTGTTT
GACGATTTTTATTTTATTTCGCTTTAAATGTTGGATAAGTATGGCTGGTA
TTGCTCATAGGATATCGTTGTTGCAACCAAAACCAATAGACCCAAATAAA
TGTACTAAAGGGAGGTCATTGTATGGACAGATTTTGGGAAATGTCCAAAC
CATATCAAAACATCAAGACAAGCAATATCATTTGGGGAATAATCAAAGTT
TTGAAAGCCCAATCCAAGCAGCTGAATACCTCTTGAGAAGAGAATATGGC
GATACTTCACTTTTTCATCATGACAAACATCAAAGTGTATTCATACCACC
AGTCTTCAGTTCCAGTCAGTTCAACGATAAAGAATCAACCACCAACATCC
TTGATTATGATGTTAGGAAAGATTTGACAAGGCTTGCTGACAATCTTAAC
CAATCTTCGCCTGATTACTGGTTAACTAATGAATTGCACTTGTTTGTACA
ATCGCAAAAAAGTGGACATTTTATTGATAAGAATTTGTTCGATCAATGGA
TCCTCAATCTCAAAATGATGTATCTTGTTGCCAAAGAGCTTCAAAGTGGA
GACTTTAAACTACCATCGATACTGGCTGATCGTACTGCGTTTGTCCAAGG
CTGTCTTGAAGTACTTACAGCTCGTAGTTTAGAAAATGCTGACTCAACAT
CAACAGCTGAATCTGATTTAAGAACTGTGCTCACAGATTTTACATCGCAA
AAGTCAGAGAAGTTTCTTAAACGTGATGTTTTATCATTGATTCGAGAGAG
TCCGCCACAAGACCCCAATCTTAACTGGATTTTTGGTTTAGAATTGGCAA
CAATTGGTGAACGTCTAGAGCATTGGTTTTTCGGTCAACTCTTACTCTTA
AAAGATGACATTCTTAAGGACACTGTTGTTCTTTCATCTGTCAACTTTAT
GACAAATGTTCGGAATAAAAAACATCGTGAATTAGATTCTCTTATAATTT
CTTGGTCAAGAAAACTCATCATATCCGTTGAAATGAAGCTCAGTTTAAAG
GATGAGAAAGTTTTCGATCAATTGGATCAAAACCATCAAATCTTTGAAGA
AAGGCTAGGTGACCGATTTCAGCCTGGATGGACATTCTATCCGTTAGTGG
TTGTCGAGCATACAGACTCCTTCTCCACAGATAATCTACATTTCATGACC
ACCGAAACTGAAGTAAAATCAAGACTGGAGAATATATTTCGTTTATTCCC
AGTTATCCCTTTGGCTGAGAATTCGACCCCGATTGAGGACGTCAAACAGC
TGTTACAAGTTATTATATTTGCAGTTCATGTGTCAAAGAAACAACAAGTG
GCGCCTATTACCAACTCAAACTGGGTGGAATATATCAGAAACGCTATTGA
CAACGTATCAACCAGTAAAAACATCATCTTTTACTCTAACCAGCAAATGA
ACCTATTGAATAATCCCCATTCTAACAAACTCATCATCCTCGGGGCTTGG
GGTACAGGAAAGACGATCATGCTCAANTATTAAATAATCCCCATTCTAAC
AAACTCATCATCCTCGGGGCTTGGGGTACAGGAAAGACGATCATGCTCAA
ACAAAAAGCTATTCAGCTAGACCAAAGTGCAGAATTTCAAGGAAAGATCT
TGTATATCCTTGGCAATTGGCTTTATGGTGTTATCCCACCCACGATGCTT
TATCACCGCACAAACTTTGAGTTAAAGGACTATCAACGGATAAACATCAT
TGAAATCAATGAAGCGGTGAGTGCGTATGCTTAATTTTCGCGGAATTTAA
TTTCGCGGTTTTTTGACGAATTCACGAATATTCTCAGGCTTTGAAAAACC
ACCTCTAAAATTGGTCTTTTTAGGGCAAAAAATTCTCTCAACCGCGAAAT
TAAACTCCGCGAAAATTCCCTCTTACTTTTTTTATAAACACGGTCCCAAA
AGAATTTAAGGCTCAATTTTAGCAAGATAAACAAAGGAGCGAATTAAGAA
CATCATTCCTAGACTCGGATTTCAGAAATGGCTGTGGAAATACTGATTTT
GATCCATTAGGTTAATAAACTTAGCCGTTTTAGAACATTATATATCAATA
GGTGAATAGTTTTAGAATATTTGAACCTAACAAACGAGTGGAAAATAATA
AGCACATTTAAATATCTTCCCAACGATACCAAACTTTTTATTATACGTCA
AGTGTTTGGAAAAAAGTTATGGTAAAAATATAAACACTGTACACCTTTTT
GACACAAACTTTAATACCATCAGTACTTTAAAATGTCATTAAAGCTTTAC
CCCTGTACTTTTTTTTAATCCTAATTATTTTATATATTGTTTTGTCATTT
TTCTTGTAAATTCAGGATGAAAATATCTGTCAAGAAATCGTACAATACAT
TACAGACAACGACATCAAAGCAGTGTTTATGGATGAGTTTTTCATGTTAA
GAGAAGGTGCAACGATCGTTGAAAATATCATGAATATGGTTGAAGTATGT
TGGATTATACCATGCCCTATTTCAGCAAACAAAAATAATTTTAAAGAATG
GGAAAATGATTTTAAGACTTTAACGCTTCAAAAGAACTTTCGAAATAGTC
AAGAAATTACAAAAATGGTTAAATCGTTTGCTGAAGAAGTGAAATTTGGT
TATATGACCGGGTTACCTTCTTCTTTACCAAATTTCCCGTGTGGGAAAAC
CCCTCTCAATGTTGATTCGTTTCAAGAAGCAATGACCGAAGCTCGGAAGT
TAACTAAACAAGGTATTCTGGTCATAATGCATAATATTACCAGAGATGTC
CGGGAGATCTTAAACACATCAAATGAAACATGGAAGATTTATACTTACCA
ACAAAATGATTTTTTGGATCCTGAAGATCCAAATCCCTATCAATTTCTTT
TGGATGGAAACGTTTTGTTTGCTGATTCACAAAAATTAAATGGCTTTGAA
TGGCAAACAGTTATATTGGTTGGTACATGGGTTAATAGGATGAAAATAAC
GCACCATGGTTGTAACTATATGATGAGATGTACCACAAATTTAATCATTG
TTGGTGACCACAATAATGCACCCCATTTTATTGTCGGTTGAAATGACCTT
TTTTTGGTAAATATCGCGTATTTAGTATTGAGCTCTTCCCGAAGTTCTTT
CCCAACTGGCACACAACGTTGTTTCAACGTTCACCTAACGTTCACAACGT
CTATTTAACGTTAGATGAACGTTGAAACAACGTTGTGTGCTAGCTGGGTT
TCTCGTCCTCAGTGTTGCAACTTTTCCGTCTGTAGACGGATATCCGTCCA
GTTGAGATACAAATATATCATTTCCGTCTTGCCAGTAAGAGGGTTTTTGG
TTCAAATGACCATCTAATCCTAAGGTTTCCGTCCATATTCACAAAACCTA
TTTGCAACACTGCGTCCTTAATAAGTAAAGCTTTTAGAAACAATAATAAG
GAAATATCTGACGGTTTGAAAACAAACAAGTTTCAATAACATCAAAATAT
GAATTCTTTTAACTTTTTGAGGCTTCCTACCTACCTTAAAAGCCAAGAAG
AACATCCTAAAGCCTGAAATTTCTAACATTCTTCGAATGAGTGATTAAAA
ATTCCTTTTTCAAAAGTTGATTTTATTAGAATATTTTAAATTTACAATTG
ATTAATCGTTAGTATTATTTTAAAATCATATTTTATGAGAAAATTCATAA
GATTTGTTTGCATATTTTTTTCATCCTAATAAATGATTTTATGTAGTGGA
TTACTTATATTTCACTGTCGGACATTAATTTTGTTGATTTTAAGACAACA
TTTTATAATATCGATTTATTATATTTTATTTTCTTGATTTTATGGACATT
GTTTTTTTTGTCAAAGTTTCTTTCAGATTTTTACACCAAATTATTCAAAA
TATTTTTACCCGAAATAATTTTTAAATAAAATATATTTTTCCTCACTTTT
TAT Coding sequence (CDS) from alignment at scaffold_116:391374..395326- >TCONS_00046705 ID=TCONS_00046705|Name=TCONS_00046705|organism=Clytia hemisphaerica|type=CDS|length=1533bp|location=Sequence derived from alignment at scaffold_116:391374..395326- (Clytia hemisphaerica)
CACACAGTTTGCATTTTTATCCTGTCCATAAAAGAAAATTTTTGTTGTTT
GACGATTTTTATTTTATTTCGCTTTAAATGTTGGATAAGTATGGCTGGTA
TTGCTCATAGGATATCGTTGTTGCAACCAAAACCAATAGACCCAAATAAA
TGTACTAAAGGGAGGTCATTGTATGGACAGATTTTGGGAAATGTCCAAAC
CATATCAAAACATCAAGACAAGCAATATCATTTGGGGAATAATCAAAGTT
TTGAAAGCCCAATCCAAGCAGCTGAATACCTCTTGAGAAGAGAATATGGC
GATACTTCACTTTTTCATCATGACAAACATCAAAGTGTATTCATACCACC
AGTCTTCAGTTCCAGTCAGTTCAACGATAAAGAATCAACCACCAACATCC
TTGATTATGATGTTAGGAAAGATTTGACAAGGCTTGCTGACAATCTTAAC
CAATCTTCGCCTGATTACTGGTTAACTAATGAATTGCACTTGTTTGTACA
ATCGCAAAAAAGTGGACATTTTATTGATAAGAATTTGTTCGATCAATGGA
TCCTCAATCTCAAAATGATGTATCTTGTTGCCAAAGAGCTTCAAAGTGGA
GACTTTAAACTACCATCGATACTGGCTGATCGTACTGCGTTTGTCCAAGG
CTGTCTTGAAGTACTTACAGCTCGTAGTTTAGAAAATGCTGACTCAACAT
CAACAGCTGAATCTGATTTAAGAACTGTGCTCACAGATTTTACATCGCAA
AAGTCAGAGAAGTTTCTTAAACGTGATGTTTTATCATTGATTCGAGAGAG
TCCGCCACAAGACCCCAATCTTAACTGGATTTTTGGTTTAGAATTGGCAA
CAATTGGTGAACGTCTAGAGCATTGGTTTTTCGGTCAACTCTTACTCTTA
AAAGATGACATTCTTAAGGACACTGTTGTTCTTTCATCTGTCAACTTTAT
GACAAATGTTCGGAATAAAAAACATCGTGAATTAGATTCTCTTATAATTT
CTTGGTCAAGAAAACTCATCATATCCGTTGAAATGAAGCTCAGTTTAAAG
GATGAGAAAGTTTTCGATCAATTGGATCAAAACCATCAAATCTTTGAAGA
AAGGCTAGGTGACCGATTTCAGCCTGGATGGACATTCTATCCGTTAGTGG
TTGTCGAGCATACAGACTCCTTCTCCACAGATAATCTACATTTCATGACC
ACCGAAACTGAAGTAAAATCAAGACTGGAGAATATATTTCGTTTATTCCC
AGTTATCCCTTTGGCTGAGAATTCGACCCCGATTGAGGACGTCAAACAGC
TGTTACAAGTTATTATATTTGCAGTTCATGTGTCAAAGAAACAACAAGTG
GCGCCTATTACCAACTCAAACTGGGTGGAATATATCAGAAACGCTATTGA
CAACGTATCAACCAGTAAAAACATCATCTTTTACTCTAACCAGCAAATGA
ACCTATTGAATAATCCCCATTCTAACAAACTCATCATCCTCGGGGCTTGG
GGTACAGGAAAGACGATCATGCTCAANTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046705-exon-scaffold_116-1575043694:393561..395326 | TCONS_00046705-exon-scaffold_116-1575043694:393561..395326 | Clytia hemisphaerica | exon |
| TCONS_00046705-exon-scaffold_116-1575043694:391374..392961 | TCONS_00046705-exon-scaffold_116-1575043694:391374..392961 | Clytia hemisphaerica | exon |
| TCONS_00046705-exon-scaffold_116-1510915933:393561..395326 | TCONS_00046705-exon-scaffold_116-1510915933:393561..395326 | Clytia hemisphaerica | exon |
| TCONS_00046705-exon-scaffold_116-1510915933:391374..392961 | TCONS_00046705-exon-scaffold_116-1510915933:391374..392961 | Clytia hemisphaerica | exon |
| TCONS_00046705-exon-scaffold_116-1491911889:393561..395326 | TCONS_00046705-exon-scaffold_116-1491911889:393561..395326 | Clytia hemisphaerica | exon |
| TCONS_00046705-exon-scaffold_116-1491911889:391374..392961 | TCONS_00046705-exon-scaffold_116-1491911889:391374..392961 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:391374..395326 - |
Blast
The following BLAST results are available for this feature:
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