TCONS_00046701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046701
Unique NameTCONS_00046701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046701 ID=TCONS_00046701|Name=TCONS_00046701|organism=Clytia hemisphaerica|type=transcript|length=1570bp
CCTGTGATAGAGATTTCAGGTGATTCTTCCATTCTCTCTTCTTCTTCGAC
CGTTGCAAACGAGTTCTCATTGTATTGTCCTTTACTTGGTGATTGGTTAG
GTGAGAATTCAGAGTTGGGTGTCTCGCTATCATATTGCCCGCTCACTAAC
GGCGTGACACAATATAAATCGTGGTCTGAATCTTGACTATACGTCGCATG
ATAGTCATACGGCGTTGGTTGACTGTTGGAGATTTCTTGTTGCTCGAAAT
GAACTTTTGGAATGTTTTCTTTGTCTTCATTATCGCTTTGTTCTTCGCAT
ACTTCTTCATGTTGGATCAAAGTGAACGCTTCTGATTGGCTGGGTTGTAA
AATCTCGGGctctgattggttgatttgTGGAATTTCGGCCTCTGGTTTGC
TAGTCTCTGCAACATCGGTCACTGATTGGCTAGTCTCTGCAACTTCGGGT
TCTGATTGGTTTACTTGTGGAGGCTCAACTTCAACCAAATCTGATGTTTG
TGGTTCTTTGACTTCCTCTGTAGCCAAAACAACTTCTTCTGATTGGCTGA
CAATGATGTCATCGGCTGGTTTTGCGGCCTCTGATAGGTTGATTTCAAGA
TCTTGTGGATTGTCCTCTACTGCTGCAACAGGAACCACGATAACTTCTTT
GTCTGTTTTCGttggtttttcttcttttccttccTTCTTTTTCTTCGGTT
TCGTTTTATCGCCAACTGAAGAAACTTTACCGGTCGGTTTCTTAGCAACT
GAGGATGCCGGTTTTTTTGATTTGTCGGCTACTGTAGTTTTTGTTGTAGA
agtctttgttgtttttgtagAGAGTGGTTTTGTAGGTGACGTTGTCGTGC
GACCTTTAGTTGCTGTTGTAGGTTTGCTAGATGCGGGTCGCGTTGATTTG
AGGGATGATGCTGAAGCAGGTCTTGTGACCGATTTCGTTGGGTCAGCAGT
TTTTGCTGTCTTTTTGACTGTTGTGCTTGATGAAGGTTTAGTTGCTccaa
ttgtcgattttggtttTGTTGTTGTGGTCGTTTTAGTTGTGGTTGTGATT
GGTTTTCGGGTCGTGGAAGATGTTTTTGTAGCTGTTGCTGCCGTTTTAGA
GGTTGCAGACGTTGTTGTGCGACTAACTCCAGTAGCTGGTTTTGTTGCTG
GTTTTTTCGCTATGTTTTGTCCAGGTTTTCCTCTATCAGCAAGTCGAGGC
ACCCCTGGAGCTTTTGGGGTTGGTTTGGGTGTAGTCGTTTTGCTGACTGT
TGGCTTGGCGGTTTTGGTTGTTGATGAGGACGTTTTACTGGCTACAGTTG
TGGGTCTCGACGTCGCTGTTGATGGCCTTGTGGTTCCAGCAGATGTTGGT
TTCTTTTTCAAAGGAGCTGTCGAGACTGGCTTGACAGGAGATTTGGATGT
TGGTCGAGTACTGGATGTTGGTCGAGTACTTGATGTGGGTGCAGTTTTGG
GCCGTGTGGTTGATGTTTTAGTTGCGGTAGGTCTTGTTGTTTTAGTCGTA
GATTTGTCGGTTGGAACTTTGCTGATTGATGTCCGTGTGACCGTTGTCTT
GGATACATTGTTTGAAACCT
Run BLAST on NCBI

transcript from alignment at scaffold_116:345540..347216-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046701 ID=TCONS_00046701|Name=TCONS_00046701|organism=Clytia hemisphaerica|type=transcript|length=1677bp|location=Sequence derived from alignment at scaffold_116:345540..347216- (Clytia hemisphaerica)
CCTGTGATAGAGATTTCAGGTGATTCTTCCATTCTCTCTTCTTCTTCGAC
CGTTGCAAACGAGTTCTCATTGTATTGTCCTTTACTTGGTGATTGGTTAG
GTGAGAATTCAGAGTTGGGTGTCTCGCTATCATATTGCCCGCTCACTAAC
GGCGTGACACAATATAAATCGTGGTCTGAATCTTGACTATACGTCGCATG
ATAGTCATACGGCGTTGGTTGACTGTTGGAGATTTCTTGTTGCTCGAAAT
GAACTTTTGGAATGTTTTCTTTGTCTTCATTATCGCTTTGTTCTTCGCAT
ACTTCTTCATGTTGGATCAAAGTGAACGCTTCTGATTGGCTGGGTTGTAA
AATCTCGGGCTCTGATTGGTTGATTTGTGGAATTTCGGCCTCTGGTTTGC
TAGTCTCTGCAACATCGGTCACTGATTGGCTAGTCTCTGCAACTTCGGGT
TCTGATTGGTTTACTTGTGGAGGCTCAACTTCAACCAAATCTGATGTTTG
TGGTTCTTTGACTTCCTCTGTAGCCAAAACAACTTCTTCTGATTGGCTGA
CAATGATGTCATCGGCTGGTTTTGCGGCCTCTGATAGGTTGATTTCAAGA
TCTTGTGGATTGTCCTCTACTGCTGCAACAGGAACCACGATAACTTCTTT
GTCTGTTTTCGTTGGTTTTTCTTCTTTTCCTTCCTTCTTTTTCTTCGGTT
TCGTTTTATCGCCAACTGAAGAAACTTTACCGGTCGGTTTCTTAGCAACT
GAGGATGCCGGTTTTTTTGATTTGTCGGCTACTGTAGTTTTTGTTGTAGA
AGTCTTTGTTGTTTTTGTAGAGAGTGGTTTTGTAGGTGACGTTGTCGTGC
GACCTTTAGTTGCTGTTGTAGGTTTGCTAGATGCGGGTCGCGTTGATTTG
AGGGATGATGCTGAAGCAGGTCTTGTGACCGATTTCGTTGGGTCAGCAGT
TTTTGCTGTCTTTTTGACTGTTGTGCTTGATGAAGGTTTAGTTGCTCCAA
TTGTCGATTTTGGTTTTGTTGTTGTGGTCGTTTTAGTTGTGGTTGTGATT
GGTTTTCGGGTCGTGGAAGATGTTTTTGTAGCTGTTGCTGCCGTTTTAGA
GGTTGCAGACGTTGTTGTGCGACTAACTCCAGTAGCTGGTTTTGTTGCTG
GTTTTTTCGCTATGTTTTGTCCAGGTTTTCCTCTATCAGCAAGTCGAGGC
GNGCTGCTGTTTTAGAGGTTGCAGACGTTGTTGTGCGACTAACTCCAGTA
GCTGGTTTTGTTGCTGGTTTTTTCGCTATGTTTTGTCCAGGTTTTCCAAG
TCGAGGCACCCCTGGAGCTTTTGGGGTTGGTTTGGGTGTAGTCGTTTTGC
TGACTGTTGGCTTGGCGGTTTTGGTTGTTGATGAGGACGTTTTACTGGCT
ACAGTTGTGGGTCTCGACGTCGCTGTTGATGGCCTTGTGGTTCCAGCAGA
TGTTGGTTTCTTTTTCAAAGGAGCTGTCGAGACTGGCTTGACAGGAGATT
TGGATGTTGGTCGAGTACTGGATGTTGGTCGAGTACTTGATGTGGGTGCA
GTTTTGGGCCGTGTGGTTGATGTTTTAGTTGCGGTAGGTCTTGTTGTTTT
AGTCGTAGATTTGTCGGTTGGAACTTTGCTGATTGATGTCCGTGTGACCG
TTGTCTTGGATACATTGTTTGAAACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029797XLOC_029797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046701-exon-scaffold_116-1575043694:346019..347216TCONS_00046701-exon-scaffold_116-1575043694:346019..347216Clytia hemisphaericaexon
TCONS_00046701-exon-scaffold_116-1575043694:345540..345911TCONS_00046701-exon-scaffold_116-1575043694:345540..345911Clytia hemisphaericaexon
TCONS_00046701-exon-scaffold_116-1510915933:346019..347216TCONS_00046701-exon-scaffold_116-1510915933:346019..347216Clytia hemisphaericaexon
TCONS_00046701-exon-scaffold_116-1510915933:345540..345911TCONS_00046701-exon-scaffold_116-1510915933:345540..345911Clytia hemisphaericaexon
TCONS_00046701-exon-scaffold_116-1491911889:346019..347216TCONS_00046701-exon-scaffold_116-1491911889:346019..347216Clytia hemisphaericaexon
TCONS_00046701-exon-scaffold_116-1491911889:345540..345911TCONS_00046701-exon-scaffold_116-1491911889:345540..345911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:345540..347216 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.130728	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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