TCONS_00046698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046698
Unique NameTCONS_00046698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length541

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046698 ID=TCONS_00046698|Name=TCONS_00046698|organism=Clytia hemisphaerica|type=transcript|length=541bp
GTTTATTTACCTTAGTTACCGGTGTGCGAGGAGAAACAGTAGTTGCTAAG
GGATTTGATGCTTTCTTGTATCGTCCGGTTACGGCAAATACGACATGTGG
CTCACCTGCGGAACAGTATTACAACACTAAAGAAGGTTACGTAGCACCAC
GTTCCCGTGTTCTTTCCGTATGCGATGCGTTAAATCCGCACCTGGCACGA
CCACCATCTTTCATGACAGATGGGAACGATACGTCGTCATGGCAATCTAT
CAATAACCAGGATAAAGCTTACATCTCTATTTCTCTCGAACAGCCGGTGT
ATGGTAAACAACTCGTTTTCCAGTTTGGTGATTACCGACGACCAGGTCAA
ATCGCCATTTACAAATCAACAGATTTCGGACGTACTTGGCAACCATGGCA
TTTTATGGTAACCCAGCAACACGAATGTACAACAGTGTTCGGGATACCCG
AAAGTGAAATTTACGTATTACCGGACGAAAATGTTCAACGAGTTTTATGT
CAACAGTATTCAGGCTATCCATTTGACTTTGGTGAAAAGGT
Run BLAST on NCBI

protein sequence of TCONS_00046698-protein

>TCONS_00046698-protein ID=TCONS_00046698-protein|Name=TCONS_00046698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
LFTLVTGVRGETVVAKGFDAFLYRPVTANTTCGSPAEQYYNTKEGYVAPR
SRVLSVCDALNPHLARPPSFMTDGNDTSSWQSINNQDKAYISISLEQPVY
GKQLVFQFGDYRRPGQIAIYKSTDFGRTWQPWHFMVTQQHECTTVFGIPE
SEIYVLPDENVQRVLCQQYSGYPFDFGEK
Run BLAST on NCBI

transcript from alignment at scaffold_116:245359..247033-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046698 ID=TCONS_00046698|Name=TCONS_00046698|organism=Clytia hemisphaerica|type=transcript|length=1675bp|location=Sequence derived from alignment at scaffold_116:245359..247033- (Clytia hemisphaerica)
GTTTATTTACCTTAGTTACCGGTGTGCGAGGAGAAACAGTAGTTGCTAAG GGATTTGATGCTTTCTTGTATCGTCCGGTTACGGCAAATACGACATGTGG CTCACCTGCGGAACAGTATTACAACACTAAAGAAGGTTACGTAGCACCAC GTTCCCGTGTTCTTTCCGTATGCGATGCGTTAAATCCGCACCTGGCACGA CCACCATCTTTCATGACAGATGGGAACGATACGTCGTCATGGCAATCTAT CAATAACCAGGATAAAGCTTACATCTCTATTTCTCTCGAACAGGTATTTT TATTACACCTCTGTGTCATAGACCCGCTAGAGCTCCAGCCCCACTGGAAA ATTTGGCAAAAATTTCGTCCCCGGTGGGAAAAATACCCTAGAATTTCAGC CCCACTGAGAAATTGATTTTGATTTCATCCCCATTCGAAATTCCTTGTTT AGAAACTGCACTCCAAAACCATCCCTACTGGATTTTTTAACCTTGGAACA ATGTGTTTTATTACATTCGAATCTTGACTACTTCTTGGAAACCTACTCTT AGACGTTCCTATTAAACTAGGGGTGGTTGGAATAAACAAATTTTAATAAA CGGGGGGGGTGAAAATTGTACTTCTGAATACGCCCAAAATAAGGCATTTA GACAGCTCAAAAATATTTTTGAAAATTAATTTGGGGGTCCTAATAAGGTC CGGAGGGTTGGAAAAAATCGAAAAGTGAATTAGTACAGTGTTGAAAATCC TTCGATAATTGTCATAGGTGAAAAAGAGGCCATATCTACACTAGCTGACT TTGTTTAATCGAGTAAAACCTAAAATCCTAGAGCTGTCTATAGTTGAAGT AACAGTAAAATAATCCGCCATTTTTAATAAGTAGACCATAGTTTGGTGCT GGCATTTTTATCGATCAAGTCCATTTTCTCGCCTCATTGCTTCGCACTAT TCTGGTTTTTTAGTTGGTTGAACAGATTGCCGGTACCGAACTGTGGTCTG GTCTACATTCAGCAAAGATGGTGGATTATTTTCTTCAACTACCATTGCTT GGGAAATACAGAGTAGCTCGATCTAGGTTTTTTATATAAGATATCTGTGG TTCGAATCTGTAGGGGCAATCCTTTACGCAATTTGAATGTTTACTTCTAT AAGGACGGGAGTTGTGTAACTTATTTAACAAAATATCTACCTTATCGGCC AAAACTTAGTCGGCCCTAAGTGACTAAATTTTGGCTTGATGACTAAAATT AGGGCCGACTAAAAATTTGGGCCAAATTAACTGTAAATAGAACCGCTTAG GTGGCCCTTAGTTACTAAGTTTTGACAAGGTGACTAAAATTAGGGCCGAA TAATAATTAAGGCCGACTAAAATTAAGGCCGACTAAATTTTGGCCGATAA GGTATTCTTTAACTTCTTTCTCTCTAGCCGGTGTATGGTAAACAACTCGT TTTCCAGTTTGGTGATTACCGACGACCAGGTCAAATCGCCATTTACAAAT CAACAGATTTCGGACGTACTTGGCAACCATGGCATTTTATGGTAACCCAG CAACACGAATGTACAACAGTGTTCGGGATACCCGAAAGTGAAATTTACGT ATTACCGGACGAAAATGTTCAACGAGTTTTATGTCAACAGTATTCAGGCT ATCCATTTGACTTTGGTGAAAAGGT

Coding sequence (CDS) from alignment at scaffold_116:245359..247033-

>TCONS_00046698 ID=TCONS_00046698|Name=TCONS_00046698|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_116:245359..247033- (Clytia hemisphaerica)
CCGGTGTATGGTAAACAACTCGTTTTCCAGTTTGGTGATTACCGACGACC
AGGTCAAATCGCCATTTACAAATCAACAGATTTCGGACGTACTTGGCAAC
CATGGCATTTTATGGTAACCCAGCAACACGAATGTACAACAGTGTTCGGG
ATACCCGAAAGTGAAATTTACGTATTACCGGACGAAAATGTTCAACGAGT
TTTATGTCAACAGTATTCAGGCTATCCATTTGACTTTGGTGAAAAGTTAT
TTACCTTAGTTACCGGTGTGCGAGGAGAAACAGTAGTTGCTAAGGGATTT
GATGCTTTCTTGTATCGTCCGGTTACGGCAAATACGACATGTGGCTCACC
TGCGGAACAGTATTACAACACTAAAGAAGGTTACGTAGCACCACGTTCCC
GTGTTCTTTCCGTATGCGATGCGTTAAATCCGCACCTGGCACGACCACCA
TCTTTCATGACAGATGGGAACGATACGTCGTCATGGCAATCTATCAATAA
CCAGGATAAAGCTTACATCTCTATTTCTCTCGAACAGCCGGTGTATGGTA
AACAACTCGTTTTCCAGTTTGGTGATTACCGACGACCAGGTCAAATCGCC
ATTTACAAATCAACAGATTTCGGACGTACTTGGCAACCATGGCATTTTAT
GGTAACCCAGCAACACGAATGTACAACAGTGTTCGGGATACCCGAAAGTG
AAATTTACGTATTACCGGACGAAAATGTTCAACGAGTTTTATGTCAACAG
TATTCAGGCTATCCATTTGACTTTGGTGAAAAGTTATTTACCTTAGTTAC
CGGTGTGCGAGGAGAAACAGTAGTTGCTAAGGGATTTGATGCTTTCTTGT
ATCGTCCGGTTACGGCAAATACGACATGTGGCTCACCTGCGGAACAGTAT
TACAACACTAAAGAAGGTTACGTAGCACCACGTTCCCGTGTTCTTTCCGT
ATGCGATGCGTTAAATCCGCACCTGGCACGACCACCATCTTTCATGACAG
ATGGGAACGATACGTCGTCATGGCAATCTATCAATAACCAGGATAAAGCT
TACATCTCTATTTCTCTCGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029795XLOC_029795Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046698-proteinTCONS_00046698-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046698-exon-scaffold_116-1575043694:246741..247033TCONS_00046698-exon-scaffold_116-1575043694:246741..247033Clytia hemisphaericaexon
TCONS_00046698-exon-scaffold_116-1575043694:245359..245606TCONS_00046698-exon-scaffold_116-1575043694:245359..245606Clytia hemisphaericaexon
TCONS_00046698-exon-scaffold_116-1510915933:246741..247033TCONS_00046698-exon-scaffold_116-1510915933:246741..247033Clytia hemisphaericaexon
TCONS_00046698-exon-scaffold_116-1510915933:245359..245606TCONS_00046698-exon-scaffold_116-1510915933:245359..245606Clytia hemisphaericaexon
TCONS_00046698-exon-scaffold_116-1491911889:246741..247033TCONS_00046698-exon-scaffold_116-1491911889:246741..247033Clytia hemisphaericaexon
TCONS_00046698-exon-scaffold_116-1491911889:245359..245606TCONS_00046698-exon-scaffold_116-1491911889:245359..245606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:245359..247033 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.288215 0.113876 1.37386 1.15757 0.810445 1.00387 2.38181 0.427012 5.4013 3.91175 2.97327 6.9025 3.44946 4.02892 0.908762 0.950954 4.02944 2.87254 1.59282 1.4481 2.98302 5.01736 1.75833 0.312756 0 0.120842
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008211Laminin_N
IPR008979Galactose-bd-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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