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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046698 ID=TCONS_00046698|Name=TCONS_00046698|organism=Clytia hemisphaerica|type=transcript|length=541bp
GTTTATTTACCTTAGTTACCGGTGTGCGAGGAGAAACAGTAGTTGCTAAG
GGATTTGATGCTTTCTTGTATCGTCCGGTTACGGCAAATACGACATGTGG
CTCACCTGCGGAACAGTATTACAACACTAAAGAAGGTTACGTAGCACCAC
GTTCCCGTGTTCTTTCCGTATGCGATGCGTTAAATCCGCACCTGGCACGA
CCACCATCTTTCATGACAGATGGGAACGATACGTCGTCATGGCAATCTAT
CAATAACCAGGATAAAGCTTACATCTCTATTTCTCTCGAACAGCCGGTGT
ATGGTAAACAACTCGTTTTCCAGTTTGGTGATTACCGACGACCAGGTCAA
ATCGCCATTTACAAATCAACAGATTTCGGACGTACTTGGCAACCATGGCA
TTTTATGGTAACCCAGCAACACGAATGTACAACAGTGTTCGGGATACCCG
AAAGTGAAATTTACGTATTACCGGACGAAAATGTTCAACGAGTTTTATGT
CAACAGTATTCAGGCTATCCATTTGACTTTGGTGAAAAGGT Run BLAST on NCBI protein sequence of TCONS_00046698-protein >TCONS_00046698-protein ID=TCONS_00046698-protein|Name=TCONS_00046698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
LFTLVTGVRGETVVAKGFDAFLYRPVTANTTCGSPAEQYYNTKEGYVAPR
SRVLSVCDALNPHLARPPSFMTDGNDTSSWQSINNQDKAYISISLEQPVY
GKQLVFQFGDYRRPGQIAIYKSTDFGRTWQPWHFMVTQQHECTTVFGIPE
SEIYVLPDENVQRVLCQQYSGYPFDFGEK Run BLAST on NCBI transcript from alignment at scaffold_116:245359..247033- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046698 ID=TCONS_00046698|Name=TCONS_00046698|organism=Clytia hemisphaerica|type=transcript|length=1675bp|location=Sequence derived from alignment at scaffold_116:245359..247033- (Clytia hemisphaerica)
GTTTATTTACCTTAGTTACCGGTGTGCGAGGAGAAACAGTAGTTGCTAAG
GGATTTGATGCTTTCTTGTATCGTCCGGTTACGGCAAATACGACATGTGG
CTCACCTGCGGAACAGTATTACAACACTAAAGAAGGTTACGTAGCACCAC
GTTCCCGTGTTCTTTCCGTATGCGATGCGTTAAATCCGCACCTGGCACGA
CCACCATCTTTCATGACAGATGGGAACGATACGTCGTCATGGCAATCTAT
CAATAACCAGGATAAAGCTTACATCTCTATTTCTCTCGAACAGGTATTTT
TATTACACCTCTGTGTCATAGACCCGCTAGAGCTCCAGCCCCACTGGAAA
ATTTGGCAAAAATTTCGTCCCCGGTGGGAAAAATACCCTAGAATTTCAGC
CCCACTGAGAAATTGATTTTGATTTCATCCCCATTCGAAATTCCTTGTTT
AGAAACTGCACTCCAAAACCATCCCTACTGGATTTTTTAACCTTGGAACA
ATGTGTTTTATTACATTCGAATCTTGACTACTTCTTGGAAACCTACTCTT
AGACGTTCCTATTAAACTAGGGGTGGTTGGAATAAACAAATTTTAATAAA
CGGGGGGGGTGAAAATTGTACTTCTGAATACGCCCAAAATAAGGCATTTA
GACAGCTCAAAAATATTTTTGAAAATTAATTTGGGGGTCCTAATAAGGTC
CGGAGGGTTGGAAAAAATCGAAAAGTGAATTAGTACAGTGTTGAAAATCC
TTCGATAATTGTCATAGGTGAAAAAGAGGCCATATCTACACTAGCTGACT
TTGTTTAATCGAGTAAAACCTAAAATCCTAGAGCTGTCTATAGTTGAAGT
AACAGTAAAATAATCCGCCATTTTTAATAAGTAGACCATAGTTTGGTGCT
GGCATTTTTATCGATCAAGTCCATTTTCTCGCCTCATTGCTTCGCACTAT
TCTGGTTTTTTAGTTGGTTGAACAGATTGCCGGTACCGAACTGTGGTCTG
GTCTACATTCAGCAAAGATGGTGGATTATTTTCTTCAACTACCATTGCTT
GGGAAATACAGAGTAGCTCGATCTAGGTTTTTTATATAAGATATCTGTGG
TTCGAATCTGTAGGGGCAATCCTTTACGCAATTTGAATGTTTACTTCTAT
AAGGACGGGAGTTGTGTAACTTATTTAACAAAATATCTACCTTATCGGCC
AAAACTTAGTCGGCCCTAAGTGACTAAATTTTGGCTTGATGACTAAAATT
AGGGCCGACTAAAAATTTGGGCCAAATTAACTGTAAATAGAACCGCTTAG
GTGGCCCTTAGTTACTAAGTTTTGACAAGGTGACTAAAATTAGGGCCGAA
TAATAATTAAGGCCGACTAAAATTAAGGCCGACTAAATTTTGGCCGATAA
GGTATTCTTTAACTTCTTTCTCTCTAGCCGGTGTATGGTAAACAACTCGT
TTTCCAGTTTGGTGATTACCGACGACCAGGTCAAATCGCCATTTACAAAT
CAACAGATTTCGGACGTACTTGGCAACCATGGCATTTTATGGTAACCCAG
CAACACGAATGTACAACAGTGTTCGGGATACCCGAAAGTGAAATTTACGT
ATTACCGGACGAAAATGTTCAACGAGTTTTATGTCAACAGTATTCAGGCT
ATCCATTTGACTTTGGTGAAAAGGT Coding sequence (CDS) from alignment at scaffold_116:245359..247033- >TCONS_00046698 ID=TCONS_00046698|Name=TCONS_00046698|organism=Clytia hemisphaerica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_116:245359..247033- (Clytia hemisphaerica)
CCGGTGTATGGTAAACAACTCGTTTTCCAGTTTGGTGATTACCGACGACC
AGGTCAAATCGCCATTTACAAATCAACAGATTTCGGACGTACTTGGCAAC
CATGGCATTTTATGGTAACCCAGCAACACGAATGTACAACAGTGTTCGGG
ATACCCGAAAGTGAAATTTACGTATTACCGGACGAAAATGTTCAACGAGT
TTTATGTCAACAGTATTCAGGCTATCCATTTGACTTTGGTGAAAAGTTAT
TTACCTTAGTTACCGGTGTGCGAGGAGAAACAGTAGTTGCTAAGGGATTT
GATGCTTTCTTGTATCGTCCGGTTACGGCAAATACGACATGTGGCTCACC
TGCGGAACAGTATTACAACACTAAAGAAGGTTACGTAGCACCACGTTCCC
GTGTTCTTTCCGTATGCGATGCGTTAAATCCGCACCTGGCACGACCACCA
TCTTTCATGACAGATGGGAACGATACGTCGTCATGGCAATCTATCAATAA
CCAGGATAAAGCTTACATCTCTATTTCTCTCGAACAGCCGGTGTATGGTA
AACAACTCGTTTTCCAGTTTGGTGATTACCGACGACCAGGTCAAATCGCC
ATTTACAAATCAACAGATTTCGGACGTACTTGGCAACCATGGCATTTTAT
GGTAACCCAGCAACACGAATGTACAACAGTGTTCGGGATACCCGAAAGTG
AAATTTACGTATTACCGGACGAAAATGTTCAACGAGTTTTATGTCAACAG
TATTCAGGCTATCCATTTGACTTTGGTGAAAAGTTATTTACCTTAGTTAC
CGGTGTGCGAGGAGAAACAGTAGTTGCTAAGGGATTTGATGCTTTCTTGT
ATCGTCCGGTTACGGCAAATACGACATGTGGCTCACCTGCGGAACAGTAT
TACAACACTAAAGAAGGTTACGTAGCACCACGTTCCCGTGTTCTTTCCGT
ATGCGATGCGTTAAATCCGCACCTGGCACGACCACCATCTTTCATGACAG
ATGGGAACGATACGTCGTCATGGCAATCTATCAATAACCAGGATAAAGCT
TACATCTCTATTTCTCTCGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046698-exon-scaffold_116-1575043694:246741..247033 | TCONS_00046698-exon-scaffold_116-1575043694:246741..247033 | Clytia hemisphaerica | exon |
| TCONS_00046698-exon-scaffold_116-1575043694:245359..245606 | TCONS_00046698-exon-scaffold_116-1575043694:245359..245606 | Clytia hemisphaerica | exon |
| TCONS_00046698-exon-scaffold_116-1510915933:246741..247033 | TCONS_00046698-exon-scaffold_116-1510915933:246741..247033 | Clytia hemisphaerica | exon |
| TCONS_00046698-exon-scaffold_116-1510915933:245359..245606 | TCONS_00046698-exon-scaffold_116-1510915933:245359..245606 | Clytia hemisphaerica | exon |
| TCONS_00046698-exon-scaffold_116-1491911889:246741..247033 | TCONS_00046698-exon-scaffold_116-1491911889:246741..247033 | Clytia hemisphaerica | exon |
| TCONS_00046698-exon-scaffold_116-1491911889:245359..245606 | TCONS_00046698-exon-scaffold_116-1491911889:245359..245606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:245359..247033 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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