TCONS_00046690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046690
Unique NameTCONS_00046690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046690 ID=TCONS_00046690|Name=TCONS_00046690|organism=Clytia hemisphaerica|type=transcript|length=2863bp
GTAAATGCTTAGTCTTTCTGTCCGAAGAGTATTCTATTTGCTACCTCTTT
TGTTTCAGTTTTTCGTGGAGAAAGcCAAAGATCTATCGTGCTGTCATTGA
AGATGTCATCAAAAATGTTCGGGAATCATTTCTCAATGAGGGGGTGGATG
AGGCTATTCTCAACGAGCTCAAGCAGcTCTGGGAAAACAAGTTACAACAA
TCAAGAGCCATAGATGTTATTCCTTCTGATGTGAATGTACGAGTCAGTCT
AACGTATCCACATAGCTCACAAACAGCTGCAAGCTCTACACAATCCTCAC
TACCTACCACTGTGCAGCCAGCTCCAAAACCTGCTGCCCGTCCGCAAGCA
ACGGCTGTGGCACCTACAACAACCCCAACACAAACTGTTTTTAGAAATGC
AGCTGGCCAGCAGCAACAAGTTGTTTATGTTAGCAATCATCCAACTCTTG
GTCATGTTGGGCCCATGACTGGAGCTGCAGTTCAAGCAACAATGGCTTTG
CAAAATGCTGCAGCTGCTGCGGGCAGGGGACAACCCCAGGCAATCATTCG
ACAACCTATCATGGGCATGCCCGGTCAGGTTATAGTCCAGGCCCAGCCTG
GAGCACCTAACAttTATCAACACTTTCAAGGACATGTTGCAGCAGTCGGT
CAGCGAGTGATATACGCTCCAGCGACTGCTACTCCTGCTACAGTTGCTGC
TGCAGCTGCCCAACCTGCACAAATTCAAGCTGCACAACAACAGCAAGCTG
CAGCTGTTGCTGCTGCACAACGAACTCAACAGGTAGCAGCAGCACAAAGA
ACTCAACAGATAGCAGCAGCACAAAGAGCTCAGCAAGCAGCTGCAGCGGC
AGCAGCAGCTGGACAAAAGGTGAATTTTCATTTCAGTCATCTTCAGTTAT
TGATAAAAGAACATAACTTGCCTAGCCTTATTACTTCAAAAAGTGCAAGT
TTGACGAGGATACATCatccataatttttttctggtgAAAAGAACTCTTG
TAATATCTAACAAACTGATCAGGTCTATGCAACTTCAGGCATTCTTTCAT
TccagctcaactgaagttgagaatagggCAGTTGTAGTATAggtaaatct
ttttttaattatctCTTTATTTTCCAGCCACCTAATCGTAACATAGTCCA
AGTAGATGGAGCAAATGATGAACAAGAAACGTGCTGCTCCCCAACGACCt
cgacctctacaaaaccaagGCAACAACCTAGATGTCGAAAACCATCCAAA
GAAATTATACTACAGTTTGACGGACCAAATGATTCAGATTCTGAGGATGA
AGAAGAGGAAGAGGAAGAAGATTTTGACAATGTGGACATCCCGGTGGCTG
CCGGTGGTATTAGCGGTGGGGGTGTTGATATAGATGAACCTGGGGAGGAA
GAGGAACCGTTAAATTCTGAAGATGACGTCACTGATGATGAAGAACAAGC
TGATTTGTTTGACACGGATAATGTTGTTGTTTGTCAATATGATAAGATTG
CAAGAACTCGGAATCGTTGgaaatttcatttgaaagacGGTATAATGAAT
TTGAACTCTAAAGACTTTGTTTTTCATAAGGCCAATGGCGATGCCGAATG
gtgatttgttttcatttgatgAAAATTGGTTTTGTTGCTCCCAATGTGTA
GAATACTATTTTCACGATGGGGGCCGGTCGCTGAAAATTACTTGGTCACA
TTGATTATTATGTCATTGTAGTAGACGCAAACAATCACAAAGAACTATCA
CAAACACGTTGTCTTATAATGATCGTCTTTGAATTGGCTCCGAGAGggaa
aatttgttaaaaacaaCTGAAACTTGGGatatatatttctatgtttAAGA
AAATCTATAAGAACTGATTAACCTCGACTAATTAGACTAACAAGCAAGTG
TTTCTTTTCGAAAACACTCAATTTTGAAAGAATGGATTACCAGCACAAGT
TTTGAGTTTTATGGGCTGTTttacttttgtgtttttttttcagattttgt
tttTAGGGTAGATAACTTTATTTCCTTTCATGAAATTTTAATAGAGTGTA
AAAAATGTTGTAGTCTCGTTGTAGATTTGTCATACTTTATTGAATACTAT
ATACTGtagggctcttccagaaaaaaatttgaatatggctggtggaggat
ataatacttttttgaaaacttgccCCAGCGCCCgaacattgtgacttttg
acccacCGGACAGCATGCCTAACCCCCAAACAAGCACTAGTTGACCCCCG
GACATGCNACTTTTGACCCACCGGACAGCATGCCTAACCCCCAaacaagc
attagttgacccccggacatgcaaaattaccctcaaacagagcaaataTA
CTCCCACtcccatgtacgaacattttctggaagggCCCATAGGTCCATAG
AATGATATAGTATCATACATGAGTAAAAAGGAAATAATGTTCTTTAAAGT
GCCAGCCAATTCAACCAACGCTTTATATACGGAAAACTTAATTGACACTG
AGTGGTTGCAACTAGCTTTTCggctttgaaaatttggaatttttaaaCTT
GAGTGctaaatgttattttttttttttttaacttttgtgtTAGCATCCCT
GTTGTTTTATTTTGGTTGACCTTTTTCGGACATGAATTATTATAAAATAC
ATAAATGAATATTTAGCTTCAATCAATTTgcgttttgtaattttttatag
aaaattttaatttctaaacattttattttttctttggttAATAATGAATA
TAATAAAGTATTTAAatagataaaataaatttaGCCAAAAAAACATTGCA
TTTTTTGTCCATGTTCTCAAATTTCCGTTAAAAATGGTTAGATTTAACTA
TTTAACGTAGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_116:51758..65168-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046690 ID=TCONS_00046690|Name=TCONS_00046690|organism=Clytia hemisphaerica|type=transcript|length=13411bp|location=Sequence derived from alignment at scaffold_116:51758..65168- (Clytia hemisphaerica)
GTAAATGCTTAGTCTTTCTGTCCGAAGAGTATTCTATTTGCTACCTCTTT
TGTTTCAGTTTTTCGTGGAGAAAGGTGTGTAAAAACTTTCTCCTTTGATA
TGTCTTCCTGCTGTTTAATGAATTAAAAAAAAATCACTTCTTTATCTTTA
CCTGATCTGATGATATATAGACATTACAAAATGCAGTTTTTATTTATCCA
ATTCGTGCCACACAAATTTTGGTTGAATACCATTCAAGAATTTAAGTCAT
TGTTTTTATATCTAATAGTAAAAATTGTTGGAAACCTGGAAAACCTCAAT
TTTTCTTCAAAAACACACTTGGGGGTCTTCGACAAAAAACTTTCGAAATT
TTTATCGGCATTGGGCCGATAAGCTTCAGACCCCCTCCCCCCCTTGCTCT
TATCGGCCAAAATTTTTCAAATCCAACTTTTACATCTTCGAAAACACAAT
TTCCTCCAATCTTGTCCGCCATCGCCTTCCCCCCCGTCATCGTTGAATTT
TTGTCTATTTGTGCACCAACATTGAGTTTGTTCATACCCGCATTGATATT
GTTAATCAAAACGAAAGATAAAATGACTGGATGAAGTCGCAACATTTCGA
AGGAAAAGGCAGCGCGCTGGCCGATGAAAAAGAGTTTTTTATCAAAGCTA
TTTCAAAACTGTACTTTTAAAGTTGCGAATTTGCACGCAAAAGTGAAAGC
ACCAAGTGAAATCATATGCTTTCAGTGGAGTTAGTGGACGAAATCAGAAA
GAAATTGGCTGAAAGGATTTTCGTCTCAATACTTGTTTTTTTATCGGTAT
GTAGTTGGACCCCCCCACCCCCTTATCGGCCCAATGCCGATAAAAAATTC
GAAAGTTTTTTGTCAAAGATCCCTTGACTGCTTGATAACTCTTGCAAAAA
CTGTGAGATTTGACTTGTGACATAAATTTACAGAAAGCCCATGTTAAATA
ATTTGTAAGGGTGCCTACTTTTGGAAAATTTGGGGAAAAAGTAGAAAATT
TGAGAACATTTTGGAATGTTAGTCCAATTCAGGGTCACTTTTTTCGCAAA
TTTCGAGTCCCACGTACGGTCCATTTTTCGAAGCTCAGCGGAGCACCCCC
GTCGGTCGACAAGGGTAGTACCCCCGCCCCCTTGGGTGTTAACCTCCACT
GGTGCAAGTTACCCACTCTCACGGTAAGTATTATATTCCAACGCCAGGAC
AGCAATTATTAGATAACTACCAAAAAACCAGGCGTACCCAATCGATGAAA
TCGATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGGATAAGGCTG
GGACAATCTATTTAAAAGATATGGACAAAAAAAGGCACTTTTTTGGGTGA
TAATTAAGATTTTACTTAGAAACTTTAATTCTCTTAGCTTACCCCCATCT
CGNATCGATACGGGAAATCAATCGATATTAATCAATTTTAATCGATAATA
ATCGATAGTGATCGATAACTAATCGATAAACAATCGATAGCCAATTGATA
CTAAGACTTTACGTTCTTATCGATTGGATTCGATTGTTATCGATTACTAT
CGATTAATCGCNCCTGATATGAGCAAGGGAACCATGTTGGCCACCCCTAC
TGAAAATTTCAGATCAAAACAAACAAGGAATTAATTCCTGTAACTCAAAG
AAAATTGGAAAAAGCTGTTTTTTGACTGTTTTCGATCCTTTTTTGGTAAA
AGCTATGCAATTTATGTTTGTATTTCTAGAAATCTTACCCATTCATTGTC
AATACATTTTTTATTTGAAAGTAATCTCTTCATGGAATAAAAAGATACTA
GCCGGTACCCGGCGTCGCACGCCCGTTTAGGTGTTTGCTGAACGCATTTA
AAGTCATTTGGATGTTGGGAAGGTGGCTTAACTGGGCTTAAACACGATGA
AATCAAAATTAAAGGGAAANACAATTAATTACGATATTCAAGTGTTTTAA
GTACGCGTTAAAGGCTTGTGTAATATATATTACATATAGATCGTATAATG
TATTAACAAGCACTAGCCGGTACCCGGCGTCGCACGCCCCTTTAGCTGTT
TGCTGAACGCATTTAAAGTCATTTGGATGTTGGGAAGGTGGCTTAAACAC
GATGAAATCAAAATTAAAGGGAAGAATTCTCTTCAAAGTTTGACTCTATC
CCTCCCATATTTTGAAAAAGATTTTTGTGGCAAAAATGATCAGTAAGCAG
GAAGGGCGTCATTCCCAAATTACACCATACCGGCGACCAGCAATGTTCGA
GACGGCTCTGCAATAAGATTTTTTTCTCGCTTCGTTCGCGTTACATTTGC
TGTAGTTCTTGATGTTTAGGAAAACTTTGATGTCAAGATAAGCGGAGTGA
AATAATAGACATGACACGAGTCGAAAAAAGGCAGCCCGGGGCAAGAGAAG
GGTATGGGTATGTGTCGGCCTTAAGGGTGCCTTTTTTGAAACATGGCAGT
TTGAAAAATCGGAAAATCAAACTTCAGTCCCACTAACAATCGGAAAAATA
GGAAAATTTCAACTTTTTGTCACCAGAAAGATAGAAATTTGGTCAAATTA
GTACCAAAAAGTGAATTAAAATTCACACAATTTCCCTTGTTTCTTCTCAT
CTTTATTCTGCTAAGGGTCTGAGGGACAGGGCCGAAAGTCAGCTCGCAAC
CATAGTCCCCCCGGAAGGCAGCTAGGACACGCAGACAAAAAAGCGTGATA
GCGCAATTTTATGTTGCTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGATAACTTTTCAAATTCAACAATGACT
TAGATTTACAGCAAAATAATTATCGACATAGATGTTTAAAGGTCCCTTTT
TACGAAGAAAGAACTCTAGTTTTTACCGCCGTTTGAATTTATTTTTAATG
TTGCTGTTGTTCTAACAAACTTGTCTTGTGATTCTTATGTCTTGTTTTAT
ATTTGTTCTTTTCTTTAACAGATTCTGTTTAAAAGATTTTCTTTTGTTTT
GAAAAGAATTCGAATGTCTCAAATCAAATAAGGTCGTTAATTACATTCGA
AAACATAAAACAAAAAAAAAGAAAGAAAAAAAAAGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NAAGTCTAATCTATCAATCAAAACAAAGTCTTTATAAAACGGCGCGAATC
TGATTCAACACATTTGTGGAGCAAGAAGCAAAAGTCATCTTTTAAAAGAA
CAAAACATTGCTTGCGAAAACGAAAGTGACACACAAAAAACAAACAAACA
TACATACAGACTACGGCTATTAATATATAGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTTCTTGTCCAAGGCTTGATCACGCGTAATAATTAGAGTGA
AATTAATTATGCAGAATTTTGGCTACGCGTTAATAATTAGAGTAAGATTA
ATTACAATTTTTTGCAAAAAACAGGGTACGCGTTAAATTAGACTACGCGT
TAAATTAGAAAAACCACGGTACATGGTATTTGGCCATTCCTATTCCCCTG
TGCATTAATCCGATTAATACAGTGATTTGTTTGTGTGATTCTACCCAAGC
CCTGGTCGCCAAGAGGGTTAGAATTGCGGGAAATTCGGCCATCGAGATAG
TTATTCGGTCGGTGGATAGTCGTCCACCGACCGGTGGAAAATTGGTCGTC
AGAATAGTCATCCGGTCGTCGAAATACTTTATTGCATGAAAATTTCGCGG
TTTAGCGGTCGAGTTCAGAAAGCCGCGAAATTAAAATGCCGCGAAAAACA
ATTTTGGAGCTCAACCGTGAAATTAAAATGCCGGGAAATGTGATTTTTTG
GGTCAACTGAAAAAAAACCCTAAAAGTAGAGTCTTTTTTGCAAAAAAATG
CAATAATCAAGACAAAATTCTCTTGGACCGCGAAATTAAAATGCCGCGAA
ATGTGATTTTTTGGGTCAACTGAAAAAAAACCCTAAAAGTAGAGTCTTTT
TTGCAAAAAAATGCAATAATCAAGACAAAATTCTCTTGGACCGCGAAATT
AAAATGCCGCGAATTGCAATTTTGGGCAAAAAAAACGCGAAATTAAAATG
ATCGCAAAATTTTCATGCCGCGAAATTTTCATGCAATAAAGTATATAGTT
ACCCGGTCGGCGAAATGGCCGTCCGGATGGCGGAAATCTTATATCCGGCC
GGCAGAAAATATACTGTCAGAATAGTCACCGGCCGTTGGAATAGTCATCC
GGCCAACGGAAAATTGGCCGTCGGAAAAGTTATACGGTCAGCGGAAATAG
AGGCCGAGCTAGTTTTTTTCGAGCTAGTTTTATTTCGGCGGTCGGACAAC
TATTATTATTATTAAATTCCCGTGAAACTTCAGAATTTTGAGCTCTGAAC
CGCGAAATTAAATTCCGCGAAAATTTCTTCCCGCGGAAATTTCTTCCCTT
AAAGTACGCTACGATATTATCGTGAGATACACTCTGGTACACAGACTAGC
GATCATACATACAGAAAATTAGCACAATCGATCGCAATCGATCTTAATCG
ATAACAATCGCATTCAATCGATGGCTAATCGATAATAATCGAATTTAATC
GGTGAAAATCGACACCAATCGATAATAAAATTTTACGTTCCTATCGATTG
GCCATCGATTAGTAATCGATCGATCATCGATTAGTAATCGATCGATCATC
GATTACGAACGACTTTTATCGATTGACATCGATTAAATCAACAATCGATG
TTATCGATTGGGTACGCCTGGAAAAAAGAAGTTAAGATACTAATTTTAAA
CCAGACCCAATCAATCAGTTACATCAATATGCCAAAAACATTTTGTTCAA
CCACCTTCACTTCAAGATAGGCCACCATAGAATGAACTTCCTTTTATAGG
ATGAACCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTGCACTCCATCACAGAGCCTATTTGAGATATTTTACTAACTAGCCC
AGAGAAAAATTTTAAACCTTTATTATTTGAATGCATGCCTTTTTGATACT
CAAATATAAAAAAATTAAAAAATTTAAACTCTGCGATGGAGTGCAAGGCT
GAAAGCCACATGAATATGGTTCATACTATAAAAGGAACTTCATTCTATGG
TGCCCTATCTTGAAGTGAAGGTGGTTGAACAAAATGTTTTTGGCATTGAT
GGAACTGTCAATCGGACTTGTCGAACCAATCAAACAATCGAACTCCATCG
AACAATAATTAAAGTTCGAACTTGGTAAAATTAATCAAACCTAATCAAAC
ACTCACAATTTTTGAAGAACTTGTCGAACAAAATTGGATTTATATCGAAC
TGATCGAAACGCAACCCATTGATCGAACTTAACCGAACACTCACAATTTT
GTTAAAAAGCTTAGAGTTCGATTAATTTTGGGCTTTCAAGCAGACTTGCC
AACATGAAATATTACCGTCAACTGCTCTAACTTGGGACGATTGGTCGAAA
CATGGGACTGTTAGGGGAGCGCCGTCCATATTCATTTGACAACGCAAAAC
GTCAAATTGACGTTGTGAAGGGATGGGGGGGGGTTTCAAAAGTTAGGTTT
GATGTTATAAGAAATCAAAGGTATACCTTTTTGTGAAAATCGCGAATATT
TGTAACCACCAACCACACTATACTTTATAAGCTTTCGAAAATATATTCGA
GTATGAATTACATGAAAATTTGTTGCTCGCATAATCCCATTGGTTCGCGC
TATGATATCATTACATCATATTTTTATTTTTTGAGAGGATAACGTCAATT
TGACGTTATGCGTCGTCAAATGAATATGGACGGGTCCCCTTACCGTGAAG
TCGGGTAACTAGCATCAGTGGAGGCAAACATGCATAGCCATCAAATGACT
GACCAATCAAAGCAGCAAAATTTCAAAACAAATGAACTACGCAGCTCCGC
TCGCTACTCTACTCTACCATTTTTTTTTTGATTTAATTTTAATGACCAGG
CAGGTCATTCATTTTAGGGCTATGCATGTTTGCCTCCACTGATGCAAGTT
ACCCGACTTCACGTTAATATCCTGGCCTGTATTTTCACTTACTGTTAAAT
CTCTTTGACAACAAATTTGTTTTGATAACTCCACCAAGTTTATCAATCAT
ACTTTCTGTCATAACATGTCACGATAACTTTTACTGATAGCGCACCCTTT
TTAACTTTACCTATCGTAAGTTGGTCTAATTCCGACACCATTTTTTAGAG
ACAGAAATAATATGAAAGCTTGAATCACTGATTGAAAAAGAATAATTCTC
TCTGGCCATTAAGCAAAGAAAAACAGTTTCAACCTTTCTATCTATTTCAG
CTGATAATTGTGGGGGGAAATTTGTTCGTTTTTTTGAGGTCGCTCAATTT
TTTTAGTCAAAGCACTTGTTATACATTTTTGGAAAGCTAAGGGGTAGTGG
AATCAAAATAACTTGGGTATACCTGTTGTATATTTTTGGAAAGCTCTCAA
AAAATTTAAATTAGAGATATATTGCAAATATAGGCGATTTCTGTACCTAA
CTTGAGATATTAACCCTTAAAAACAGTGTTTTTCAGCCAGAAACAGCTGT
TTTGTTCAGTTTTTGCGCTTCTGGAAGCTCGATATCTCGAGTTAGGTACT
GAAATCACCTATACTCACCTTATAATTGATAAATTATGAAAATATAGCCT
ACTGTAAGGTATTTTCCTTCACATCCGCAACCCCAAAAAAACAATCCCAA
AAGCTTTAATTCAAGTTTTGAAATTTAGAGGGACCCATGGGTGAGGAGGA
GCTGCTTATTAAAAAATGTGTAGTAAAGAATTTTGATTATTGATTTTCAG
TTTTGAACTATTTATAACTTTTTAATAGTCATTCTTTGATTATCTTTTTT
TCTTGATTTTAGCCAAAGATCTATCGTGCTGTCATTGAAGATGTCATCAA
AAATGTTCGGGAATCATTTCTCAATGAGGGGGTGGATGAGGCTATTCTCA
ACGAGCTCAAGCAGGTAATTGCATGCAAATGTCTAACTTCACCAAGATTC
ACCAAGTTTGTTGCAATACTTTTTTAATTACCAGATAAGTTTGATATAAT
AAATCATTTTTTTGAATAGTTTTTAATTGAATAGAATTGAAGGAACTCAG
AAAATGAGTGATCTTATTATGATGTTCTTTGAAGGAACTTAATCCGGCAC
ATTTTATTAAAATCTATAGGATATCTGAAATTATATTTTCTTTTCAGCTC
TGGGAAAACAAGTTACAACAATCAAGAGCCATAGATGTTATTCCTTCTGA
TGTGAATGTACGAGTCAGTCTAACGTATCCACATAGCTCACAAACAGGTA
AAAATTACCACAGGGAAATCACAGGGAAAGACAGGGATTGCCTAAGGGTA
TTACAATTTACATCTGTACGATAACTAAATTTCAGATTTCTAAAGCTTAA
AAATTAGTCGAGTCAGAAAGAGTGATACATTTTCTATCTAATCCTTATTT
CAATGTATGTACTTGTTTTATAATTTAAAAATCTTGTCTCATCAATATTA
AACTTAATAAACAAATTTATACAACATTCTATCAATTTACTCCAGCTGCA
AGCTCTACACAATCCTCACTACCTACCACTGTGCAGCCAGCTCCAAAACC
TGCTGCCCGTCCGCAAGCAACGGCTGTGGCACCTACAACAACCCCAACAC
AAACTGTTTTTAGAAATGCAGCTGGCCAGCAGCAACAAGTTGTTTATGTT
AGCAATCATCCAACTCTTGGTCATGTTGGGCCCATGGTATGTTCTAGTTC
ATGTAGGGAAGAACCAGTGGGGTCCACGATTTATGAGCTATAAAATTTAA
TCAGTGAGTTATAAGATATGTGAGATATATCCTTGCAGATCCTTGTGTTA
TGCATTATGATTTCATTCTGAGAAGTCTTTTGGTTTAATTTCTCAATGGT
CCCACTTATTTTTACCACAGACTGGAGCTGCAGTTCAAGCAACAATGGCT
TTGCAAAATGCTGCAGCTGCTGCGGGCAGGGGACAACCCCAGGCAATCAT
TCGACAACCTATCATGGGCATGCCCGGTCAGGTTATAGTCCAGGTGAGTA
AAGTCCTTCATTAGTTTTTGTTTCAAGGATGGCCTTTAAAATTTCAAACC
CTAGGTTTTTGAAGCTAGATCGGTCAGTAAATGAATTTTATTGATAGATT
TATCATTCTTACAAGGCAACAGTTAATTAAACCTTACTGTTGAATTATTT
CTTTTCAAAACAAAGATGGCCACTCAAAACTTTCCCTGAATTGTTTCCCA
TTGTTGTGCTCTTATATGGTTAAGATAGTTTAAAGTGATTTAGAACACAC
ACTTTCTTTATAAGAATATGCTAAGAATATCACCATCATGGGAAATATGC
AACAGAACCTAAGAATGCCATTTTAGAACATTTTAAATGTCTGTCCCTCC
TCAAAACATTAACAAAAATGTAATTTTATGCTTCAGGTATTACCAGGTAT
TAATTGTTGGATTTAGGTCCTAACCTAAGAATACCATATTGAATATTTTT
AAGATGATTCTCCTCGAAAAGTTGAGAATATCCATGATGACTATATGACT
AAAAAAGTGTGAGTGGATAAAATGAAAAAAAAAAATTTTGGGGGGGGGGT
AAAAATCCACTCACCATGATGATATTTTATTAACTTAGCAAAGTAATTTA
CTTTTTGTACATTTTTATTTTACAGGCCCAGCCTGGAGCACCTAACAGTA
AGTATTGTTTTAAGATTATAAGTCTATAGTATATTTGATATTTTTAAGTC
CTGTTAAATGTTTTAGCTCTTTCACAGACACTTTTGTGTATTTAAACTTT
GAAACTGAGACATTTGGTAAATTATATATGTTTACCTCTTCTTCTTTTTT
TAGTTTATCAACACTTTCAAGGACATGTTGCAGCAGTCGGTCAGCGAGTG
ATATACGCTCCAGCGACTGCTACTCCTGCTACAGTTGCTGCTGCAGCTGC
CCAACCTGCACAAATTCAAGCTGCACAACAACAGCAAGCTGCAGCTGTTG
CTGCTGCACAACGAACTCAACAGGTAGCAGCAGCACAAAGAACTCAACAG
ATAGCAGCAGCACAAAGAGCTCAGCAAGCAGCTGCAGCGGCAGCAGCAGC
TGGACAAAAGGTGAATTTTCATTTCAGTCATCTTCAGTTATTGATAAAAG
AACATAACTTGCCTAGCCTTATTACTTCAAAAAGTGCAAGTTTGACGAGG
ATACATCATCCATAATTTTTTTCTGGTGAAAAGAACTCTTGTAATATCTA
ACAAACTGATCAGGTCTATGCAACTTCAGGCATTCTTTCATTCCAGCTCA
ACTGAAGTTGAGAATAGGGCAGTTGTAGTATAGGTAAATCTTTTTTTAAT
TATCTCTTTATTTTCCAGCCACCTAATCGTAACATAGTCCAAGTAGATGG
AGCAAATGATGAACAAGAAACGTGCTGCTCCCCAACGACCTCGACCTCTA
CAAAACCAAGGCAACAACCTAGATGTCGAAAACCATCCAAAGAAATTATA
CTACAGTTTGACGGACCAAATGATTCAGATTCTGAGGATGAAGAAGAGGA
AGAGGAAGAAGATTTTGACAATGTGGACATCCCGGTGGCTGCCGGTGGTA
TTAGCGGTGGGGGTGTTGATATAGATGAACCTGGGGAGGTGAGTGAATGA
ATCAATTTGATCTGCCTTGATTGGGGTTTTTTAAATTTCTTTCTAACAGT
CATATTTTAATGATCTTGGTTTAGCCCAAAATTTCATTGGTCTTTTACTG
CACTATGTAAAACGGGAAGCAGCAGGAAGTGGTAATTTATAATTACTATC
AATTCCTCAAACTCCAAAGTTCCGCTGTGCTGCAATATCCTGCAACATTC
CACAGGCATAATAAAAGGTGGAAGGTCTTGTTAGGTGCTTAAAACAGACA
TAATATCAAGAAGGGGCACCAGTAGGTTGTAAGTTGGACTTTTGTATAGA
GTTCTGAAGAGACGCTCAATAAAAAACCAAGCAATTCAACATCCTGCAAT
TCAAAATTTCCACACATGTGTTTTGTTTACTATCATGTTAAGGAAGAGGA
ACCGTTAAATTCTGAAGATGACGTCACTGATGATGAAGAACAAGCTGATT
TGTTTGACACGGATAATGTTGTTGTTTGTCAATATGATAAGGTATTTCTT
AATTAGTGAAATCTTATTTGAAGTACTTTATTCTTGCAAGGAAAGTTGTT
CCCTTAAAGTATCAGAGGCTTTTGTGATTTTCAGGACTGCAGAAAGTATA
CATGGGTCACAACTCAAAAATTAGATTACCCCCTTTGGACTTTTTTAACC
TACCTCCGGGTACCCCGGTGGAGGTCCTATAAATTAACCGTTGTCCCGTT
CGTTCGTTCGTCCGTTCGTCTTTTACCAGCTTTTCTCTAGTCTAGCAAGC
TAGACGACTAATTTATACATAGTAGAAATAAAGCAAAAAATAATGAATGG
AACAATTTTAGTCGTCTAGAAACCTTTGTGCACTAACTCCAAACAAAAGA
AAAGTGTCAATATTGCAATTATAATCTTTTCCTGCTCAAAATAATTCTTG
AGAAAAAAAATATGTTTGGATTTGTGTATTGAAAGTTTTTCATTTGAGTT
TATTTCGTTTCGAGAGTTTGTTGTTGCTTGATAAATTGTTTTCTCGCTAC
GCAAGTTTCTGCGTAGCTAGCCGGGGTATCTATAAGGCTGGAACACCGGA
TTCTTCCAGTCGTTTATACAAACTAAATCCCGTATTATTATTATTATTAG
TATTGGTATTATTAGTATTACACACATTATAAACGACTCCAGTCTAGCTT
TTCTCGAGATTTGCTCATTAGTTTTTTCTGATTTTTGGCACAAAGATGCA
AAATGGCAATGGCCAAAATGTGACGGAGCCTGATTTTCGAAAAAAAAGAT
TTTGCCGGAAAAACTTGTTTTTTTGGCATTTTCTCGAGATTTTATCATTA
TTTTTTCTGATTTTTTGCTCAAAGAAGCGTATTAACAATGCCCAAAACAT
GGCCGAGTCCGATTTTTGAGAATTGTTTTTTTTTCTGGGTTTTCATTGGA
CTTTTTCCTTATAATTGGCTGATTTTTCATTCAAAAACATTATTAATAGC
AATGCCCACCATCAAGCATGTTTCAATTTTCAATAAAACTGATTTTTGAG
ACCAGAACTTTCTATTTATTTTTTCCCCTACAACCCTTCCCTCTCCCCCC
ATCAACAATCAATGATGAATTTATTGCGTTATGTATTTTCACTAAACTCT
ATGTTTTCTGACCGATTTTTTCATTTTTGGACCTACCCCGGTCCTATAAA
TTAACCTACTCAATTTTTTAATGAGATAGATGTTTTTTTTTTGCTCACGA
AGTCTTGAATATGAAAGATTATNCGCTATATTTTCTGACTGATTTTTTTC
ATTTTTGTCCTCACATTGCTATCTAACTTTCATCATCAGGTAGGTCCATT
CAGCATCTAGCTTGTTTCGTTTATTGTGTCATTTATTCCAATTAAATTAG
GTTGTATGGATTCTTCACAGTTTTATTTACTTTGCGAGTGGTGTAACATT
ATTTTGATTTCTAAATTTTTCTTTACAATTTTTCTGCTTTCTAGATTGCA
AGAACTCGGAATCGTTGGAAATTTCATTTGAAAGACGGTATAATGAATTT
GAACTCTAAAGACTTTGTTTTTCATAAGGCCAATGGCGATGCCGAATGGT
GATTTGTTTTCATTTGATGAAAATTGGTTTTGTTGCTCCCAATGTGTAGA
ATACTATTTTCACGATGGGGGCCGGTCGCTGAAAATTACTTGGTCACATT
GATTATTATGTCATTGTAGTAGACGCAAACAATCACAAAGAACTATCACA
AACACGTTGTCTTATAATGATCGTCTTTGAATTGGCTCCGAGAGGGAAAA
TTTGTTAAAAACAACTGAAACTTGGGATATATATTTCTATGTTTAAGAAA
ATCTATAAGAACTGATTAACCTCGACTAATTAGACTAACAAGCAAGTGTT
TCTTTTCGAAAACACTCAATTTTGAAAGAATGGATTACCAGCACAAGTTT
TGAGTTTTATGGGCTGTTTTACTTTTGTGTTTTTTTTTCAGATTTTGTTT
TTAGGGTAGATAACTTTATTTCCTTTCATGAAATTTTAATAGAGTGTAAA
AAATGTTGTAGTCTCGTTGTAGATTTGTCATACTTTATTGAATACTATAT
ACTGTAGGGCTCTTCCAGAAAAAAATTTGAATATGGCTGGTGGAGGATAT
AATACTTTTTTGAAAACTTGCCCCAGCGCCCGAACATTGTGACTTTTGAC
CCACCGGACAGCATGCCTAACCCCCAAACAAGCACTAGTTGACCCCCGGA
CATGCNACTTTTGACCCACCGGACAGCATGCCTAACCCCCAAACAAGCAT
TAGTTGACCCCCGGACATGCAAAATTACCCTCAAACAGAGCAAATATACT
CCCACTCCCATGTACGAACATTTTCTGGAAGGGCCCATAGGTCCATAGAA
TGATATAGTATCATACATGAGTAAAAAGGAAATAATGTTCTTTAAAGTGC
CAGCCAATTCAACCAACGCTTTATATACGGAAAACTTAATTGACACTGAG
TGGTTGCAACTAGCTTTTCGGCTTTGAAAATTTGGAATTTTTAAACTTGA
GTGCTAAATGTTATTTTTTTTTTTTTTAACTTTTGTGTTAGCATCCCTGT
TGTTTTATTTTGGTTGACCTTTTTCGGACATGAATTATTATAAAATACAT
AAATGAATATTTAGCTTCAATCAATTTGCGTTTTGTAATTTTTTATAGAA
AATTTTAATTTCTAAACATTTTATTTTTTCTTTGGTTAATAATGAATATA
ATAAAGTATTTAAATAGATAAAATAAATTTAGCCAAAAAAACATTGCATT
TTTTGTCCATGTTCTCAAATTTCCGTTAAAAATGGTTAGATTTAACTATT
TAACGTAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029793XLOC_029793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046690-exon-scaffold_116-1575043694:65095..65168TCONS_00046690-exon-scaffold_116-1575043694:65095..65168Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:57755..57856TCONS_00046690-exon-scaffold_116-1575043694:57755..57856Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:57422..57521TCONS_00046690-exon-scaffold_116-1575043694:57422..57521Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:56983..57173TCONS_00046690-exon-scaffold_116-1575043694:56983..57173Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:56676..56798TCONS_00046690-exon-scaffold_116-1575043694:56676..56798Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:56022..56043TCONS_00046690-exon-scaffold_116-1575043694:56022..56043Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:55081..55865TCONS_00046690-exon-scaffold_116-1575043694:55081..55865Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:54578..54676TCONS_00046690-exon-scaffold_116-1575043694:54578..54676Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:51758..53124TCONS_00046690-exon-scaffold_116-1575043694:51758..53124Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:65095..65168TCONS_00046690-exon-scaffold_116-1510915933:65095..65168Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:57755..57856TCONS_00046690-exon-scaffold_116-1510915933:57755..57856Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:57422..57521TCONS_00046690-exon-scaffold_116-1510915933:57422..57521Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:56983..57173TCONS_00046690-exon-scaffold_116-1510915933:56983..57173Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:56676..56798TCONS_00046690-exon-scaffold_116-1510915933:56676..56798Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:56022..56043TCONS_00046690-exon-scaffold_116-1510915933:56022..56043Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:55081..55865TCONS_00046690-exon-scaffold_116-1510915933:55081..55865Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:54578..54676TCONS_00046690-exon-scaffold_116-1510915933:54578..54676Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:51758..53124TCONS_00046690-exon-scaffold_116-1510915933:51758..53124Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:65095..65168TCONS_00046690-exon-scaffold_116-1491911889:65095..65168Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:57755..57856TCONS_00046690-exon-scaffold_116-1491911889:57755..57856Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:57422..57521TCONS_00046690-exon-scaffold_116-1491911889:57422..57521Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:56983..57173TCONS_00046690-exon-scaffold_116-1491911889:56983..57173Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:56676..56798TCONS_00046690-exon-scaffold_116-1491911889:56676..56798Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:56022..56043TCONS_00046690-exon-scaffold_116-1491911889:56022..56043Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:55081..55865TCONS_00046690-exon-scaffold_116-1491911889:55081..55865Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:54578..54676TCONS_00046690-exon-scaffold_116-1491911889:54578..54676Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:51758..53124TCONS_00046690-exon-scaffold_116-1491911889:51758..53124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:51758..65168 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6.88319e-09	0	0	0	0
Blast
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BLAST of TCONS_00046690 vs. Swiss-Prot (Human)
Match: TF2AA (Transcription initiation factor IIA subunit 1 OS=Homo sapiens GN=GTF2A1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.707e-22
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 3 
Query: 1434 DDEEQADLFDTDNVVVCQYDKIARTRNRWKFHLKDGIMNLNSKDFVFHKANGDAEW 1601
             DEE  +LFDT+NVVVCQYDKI R++N+WKFHLKDGIMNLN +D++F KA GDAEW
Sbjct:  321 SDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376
The following BLAST results are available for this feature:
BLAST of TCONS_00046690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TF2AA5.707e-2273.21Transcription initiation factor IIA subunit 1 OS=H... [more]
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