TCONS_00046690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046690
Unique NameTCONS_00046690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046690 ID=TCONS_00046690|Name=TCONS_00046690|organism=Clytia hemisphaerica|type=transcript|length=2863bp
GTAAATGCTTAGTCTTTCTGTCCGAAGAGTATTCTATTTGCTACCTCTTT
TGTTTCAGTTTTTCGTGGAGAAAGcCAAAGATCTATCGTGCTGTCATTGA
AGATGTCATCAAAAATGTTCGGGAATCATTTCTCAATGAGGGGGTGGATG
AGGCTATTCTCAACGAGCTCAAGCAGcTCTGGGAAAACAAGTTACAACAA
TCAAGAGCCATAGATGTTATTCCTTCTGATGTGAATGTACGAGTCAGTCT
AACGTATCCACATAGCTCACAAACAGCTGCAAGCTCTACACAATCCTCAC
TACCTACCACTGTGCAGCCAGCTCCAAAACCTGCTGCCCGTCCGCAAGCA
ACGGCTGTGGCACCTACAACAACCCCAACACAAACTGTTTTTAGAAATGC
AGCTGGCCAGCAGCAACAAGTTGTTTATGTTAGCAATCATCCAACTCTTG
GTCATGTTGGGCCCATGACTGGAGCTGCAGTTCAAGCAACAATGGCTTTG
CAAAATGCTGCAGCTGCTGCGGGCAGGGGACAACCCCAGGCAATCATTCG
ACAACCTATCATGGGCATGCCCGGTCAGGTTATAGTCCAGGCCCAGCCTG
GAGCACCTAACAttTATCAACACTTTCAAGGACATGTTGCAGCAGTCGGT
CAGCGAGTGATATACGCTCCAGCGACTGCTACTCCTGCTACAGTTGCTGC
TGCAGCTGCCCAACCTGCACAAATTCAAGCTGCACAACAACAGCAAGCTG
CAGCTGTTGCTGCTGCACAACGAACTCAACAGGTAGCAGCAGCACAAAGA
ACTCAACAGATAGCAGCAGCACAAAGAGCTCAGCAAGCAGCTGCAGCGGC
AGCAGCAGCTGGACAAAAGGTGAATTTTCATTTCAGTCATCTTCAGTTAT
TGATAAAAGAACATAACTTGCCTAGCCTTATTACTTCAAAAAGTGCAAGT
TTGACGAGGATACATCatccataatttttttctggtgAAAAGAACTCTTG
TAATATCTAACAAACTGATCAGGTCTATGCAACTTCAGGCATTCTTTCAT
TccagctcaactgaagttgagaatagggCAGTTGTAGTATAggtaaatct
ttttttaattatctCTTTATTTTCCAGCCACCTAATCGTAACATAGTCCA
AGTAGATGGAGCAAATGATGAACAAGAAACGTGCTGCTCCCCAACGACCt
cgacctctacaaaaccaagGCAACAACCTAGATGTCGAAAACCATCCAAA
GAAATTATACTACAGTTTGACGGACCAAATGATTCAGATTCTGAGGATGA
AGAAGAGGAAGAGGAAGAAGATTTTGACAATGTGGACATCCCGGTGGCTG
CCGGTGGTATTAGCGGTGGGGGTGTTGATATAGATGAACCTGGGGAGGAA
GAGGAACCGTTAAATTCTGAAGATGACGTCACTGATGATGAAGAACAAGC
TGATTTGTTTGACACGGATAATGTTGTTGTTTGTCAATATGATAAGATTG
CAAGAACTCGGAATCGTTGgaaatttcatttgaaagacGGTATAATGAAT
TTGAACTCTAAAGACTTTGTTTTTCATAAGGCCAATGGCGATGCCGAATG
gtgatttgttttcatttgatgAAAATTGGTTTTGTTGCTCCCAATGTGTA
GAATACTATTTTCACGATGGGGGCCGGTCGCTGAAAATTACTTGGTCACA
TTGATTATTATGTCATTGTAGTAGACGCAAACAATCACAAAGAACTATCA
CAAACACGTTGTCTTATAATGATCGTCTTTGAATTGGCTCCGAGAGggaa
aatttgttaaaaacaaCTGAAACTTGGGatatatatttctatgtttAAGA
AAATCTATAAGAACTGATTAACCTCGACTAATTAGACTAACAAGCAAGTG
TTTCTTTTCGAAAACACTCAATTTTGAAAGAATGGATTACCAGCACAAGT
TTTGAGTTTTATGGGCTGTTttacttttgtgtttttttttcagattttgt
tttTAGGGTAGATAACTTTATTTCCTTTCATGAAATTTTAATAGAGTGTA
AAAAATGTTGTAGTCTCGTTGTAGATTTGTCATACTTTATTGAATACTAT
ATACTGtagggctcttccagaaaaaaatttgaatatggctggtggaggat
ataatacttttttgaaaacttgccCCAGCGCCCgaacattgtgacttttg
acccacCGGACAGCATGCCTAACCCCCAAACAAGCACTAGTTGACCCCCG
GACATGCNACTTTTGACCCACCGGACAGCATGCCTAACCCCCAaacaagc
attagttgacccccggacatgcaaaattaccctcaaacagagcaaataTA
CTCCCACtcccatgtacgaacattttctggaagggCCCATAGGTCCATAG
AATGATATAGTATCATACATGAGTAAAAAGGAAATAATGTTCTTTAAAGT
GCCAGCCAATTCAACCAACGCTTTATATACGGAAAACTTAATTGACACTG
AGTGGTTGCAACTAGCTTTTCggctttgaaaatttggaatttttaaaCTT
GAGTGctaaatgttattttttttttttttaacttttgtgtTAGCATCCCT
GTTGTTTTATTTTGGTTGACCTTTTTCGGACATGAATTATTATAAAATAC
ATAAATGAATATTTAGCTTCAATCAATTTgcgttttgtaattttttatag
aaaattttaatttctaaacattttattttttctttggttAATAATGAATA
TAATAAAGTATTTAAatagataaaataaatttaGCCAAAAAAACATTGCA
TTTTTTGTCCATGTTCTCAAATTTCCGTTAAAAATGGTTAGATTTAACTA
TTTAACGTAGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_116:51758..65168-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046690 ID=TCONS_00046690|Name=TCONS_00046690|organism=Clytia hemisphaerica|type=transcript|length=13411bp|location=Sequence derived from alignment at scaffold_116:51758..65168- (Clytia hemisphaerica)
GTAAATGCTTAGTCTTTCTGTCCGAAGAGTATTCTATTTGCTACCTCTTT TGTTTCAGTTTTTCGTGGAGAAAGGTGTGTAAAAACTTTCTCCTTTGATA TGTCTTCCTGCTGTTTAATGAATTAAAAAAAAATCACTTCTTTATCTTTA CCTGATCTGATGATATATAGACATTACAAAATGCAGTTTTTATTTATCCA ATTCGTGCCACACAAATTTTGGTTGAATACCATTCAAGAATTTAAGTCAT TGTTTTTATATCTAATAGTAAAAATTGTTGGAAACCTGGAAAACCTCAAT TTTTCTTCAAAAACACACTTGGGGGTCTTCGACAAAAAACTTTCGAAATT TTTATCGGCATTGGGCCGATAAGCTTCAGACCCCCTCCCCCCCTTGCTCT TATCGGCCAAAATTTTTCAAATCCAACTTTTACATCTTCGAAAACACAAT TTCCTCCAATCTTGTCCGCCATCGCCTTCCCCCCCGTCATCGTTGAATTT TTGTCTATTTGTGCACCAACATTGAGTTTGTTCATACCCGCATTGATATT GTTAATCAAAACGAAAGATAAAATGACTGGATGAAGTCGCAACATTTCGA AGGAAAAGGCAGCGCGCTGGCCGATGAAAAAGAGTTTTTTATCAAAGCTA TTTCAAAACTGTACTTTTAAAGTTGCGAATTTGCACGCAAAAGTGAAAGC ACCAAGTGAAATCATATGCTTTCAGTGGAGTTAGTGGACGAAATCAGAAA GAAATTGGCTGAAAGGATTTTCGTCTCAATACTTGTTTTTTTATCGGTAT GTAGTTGGACCCCCCCACCCCCTTATCGGCCCAATGCCGATAAAAAATTC GAAAGTTTTTTGTCAAAGATCCCTTGACTGCTTGATAACTCTTGCAAAAA CTGTGAGATTTGACTTGTGACATAAATTTACAGAAAGCCCATGTTAAATA ATTTGTAAGGGTGCCTACTTTTGGAAAATTTGGGGAAAAAGTAGAAAATT TGAGAACATTTTGGAATGTTAGTCCAATTCAGGGTCACTTTTTTCGCAAA TTTCGAGTCCCACGTACGGTCCATTTTTCGAAGCTCAGCGGAGCACCCCC GTCGGTCGACAAGGGTAGTACCCCCGCCCCCTTGGGTGTTAACCTCCACT GGTGCAAGTTACCCACTCTCACGGTAAGTATTATATTCCAACGCCAGGAC AGCAATTATTAGATAACTACCAAAAAACCAGGCGTACCCAATCGATGAAA TCGATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGGGATAAGGCTG GGACAATCTATTTAAAAGATATGGACAAAAAAAGGCACTTTTTTGGGTGA TAATTAAGATTTTACTTAGAAACTTTAATTCTCTTAGCTTACCCCCATCT CGNATCGATACGGGAAATCAATCGATATTAATCAATTTTAATCGATAATA ATCGATAGTGATCGATAACTAATCGATAAACAATCGATAGCCAATTGATA CTAAGACTTTACGTTCTTATCGATTGGATTCGATTGTTATCGATTACTAT CGATTAATCGCNCCTGATATGAGCAAGGGAACCATGTTGGCCACCCCTAC TGAAAATTTCAGATCAAAACAAACAAGGAATTAATTCCTGTAACTCAAAG AAAATTGGAAAAAGCTGTTTTTTGACTGTTTTCGATCCTTTTTTGGTAAA AGCTATGCAATTTATGTTTGTATTTCTAGAAATCTTACCCATTCATTGTC AATACATTTTTTATTTGAAAGTAATCTCTTCATGGAATAAAAAGATACTA GCCGGTACCCGGCGTCGCACGCCCGTTTAGGTGTTTGCTGAACGCATTTA AAGTCATTTGGATGTTGGGAAGGTGGCTTAACTGGGCTTAAACACGATGA AATCAAAATTAAAGGGAAANACAATTAATTACGATATTCAAGTGTTTTAA GTACGCGTTAAAGGCTTGTGTAATATATATTACATATAGATCGTATAATG TATTAACAAGCACTAGCCGGTACCCGGCGTCGCACGCCCCTTTAGCTGTT TGCTGAACGCATTTAAAGTCATTTGGATGTTGGGAAGGTGGCTTAAACAC GATGAAATCAAAATTAAAGGGAAGAATTCTCTTCAAAGTTTGACTCTATC CCTCCCATATTTTGAAAAAGATTTTTGTGGCAAAAATGATCAGTAAGCAG GAAGGGCGTCATTCCCAAATTACACCATACCGGCGACCAGCAATGTTCGA GACGGCTCTGCAATAAGATTTTTTTCTCGCTTCGTTCGCGTTACATTTGC TGTAGTTCTTGATGTTTAGGAAAACTTTGATGTCAAGATAAGCGGAGTGA AATAATAGACATGACACGAGTCGAAAAAAGGCAGCCCGGGGCAAGAGAAG GGTATGGGTATGTGTCGGCCTTAAGGGTGCCTTTTTTGAAACATGGCAGT TTGAAAAATCGGAAAATCAAACTTCAGTCCCACTAACAATCGGAAAAATA GGAAAATTTCAACTTTTTGTCACCAGAAAGATAGAAATTTGGTCAAATTA GTACCAAAAAGTGAATTAAAATTCACACAATTTCCCTTGTTTCTTCTCAT CTTTATTCTGCTAAGGGTCTGAGGGACAGGGCCGAAAGTCAGCTCGCAAC CATAGTCCCCCCGGAAGGCAGCTAGGACACGCAGACAAAAAAGCGTGATA GCGCAATTTTATGTTGCTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNGATAACTTTTCAAATTCAACAATGACT TAGATTTACAGCAAAATAATTATCGACATAGATGTTTAAAGGTCCCTTTT TACGAAGAAAGAACTCTAGTTTTTACCGCCGTTTGAATTTATTTTTAATG TTGCTGTTGTTCTAACAAACTTGTCTTGTGATTCTTATGTCTTGTTTTAT ATTTGTTCTTTTCTTTAACAGATTCTGTTTAAAAGATTTTCTTTTGTTTT GAAAAGAATTCGAATGTCTCAAATCAAATAAGGTCGTTAATTACATTCGA AAACATAAAACAAAAAAAAAGAAAGAAAAAAAAAGNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NAAGTCTAATCTATCAATCAAAACAAAGTCTTTATAAAACGGCGCGAATC TGATTCAACACATTTGTGGAGCAAGAAGCAAAAGTCATCTTTTAAAAGAA CAAAACATTGCTTGCGAAAACGAAAGTGACACACAAAAAACAAACAAACA TACATACAGACTACGGCTATTAATATATAGNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNTTTTCTTGTCCAAGGCTTGATCACGCGTAATAATTAGAGTGA AATTAATTATGCAGAATTTTGGCTACGCGTTAATAATTAGAGTAAGATTA ATTACAATTTTTTGCAAAAAACAGGGTACGCGTTAAATTAGACTACGCGT TAAATTAGAAAAACCACGGTACATGGTATTTGGCCATTCCTATTCCCCTG TGCATTAATCCGATTAATACAGTGATTTGTTTGTGTGATTCTACCCAAGC CCTGGTCGCCAAGAGGGTTAGAATTGCGGGAAATTCGGCCATCGAGATAG TTATTCGGTCGGTGGATAGTCGTCCACCGACCGGTGGAAAATTGGTCGTC AGAATAGTCATCCGGTCGTCGAAATACTTTATTGCATGAAAATTTCGCGG TTTAGCGGTCGAGTTCAGAAAGCCGCGAAATTAAAATGCCGCGAAAAACA ATTTTGGAGCTCAACCGTGAAATTAAAATGCCGGGAAATGTGATTTTTTG GGTCAACTGAAAAAAAACCCTAAAAGTAGAGTCTTTTTTGCAAAAAAATG CAATAATCAAGACAAAATTCTCTTGGACCGCGAAATTAAAATGCCGCGAA ATGTGATTTTTTGGGTCAACTGAAAAAAAACCCTAAAAGTAGAGTCTTTT TTGCAAAAAAATGCAATAATCAAGACAAAATTCTCTTGGACCGCGAAATT AAAATGCCGCGAATTGCAATTTTGGGCAAAAAAAACGCGAAATTAAAATG ATCGCAAAATTTTCATGCCGCGAAATTTTCATGCAATAAAGTATATAGTT ACCCGGTCGGCGAAATGGCCGTCCGGATGGCGGAAATCTTATATCCGGCC GGCAGAAAATATACTGTCAGAATAGTCACCGGCCGTTGGAATAGTCATCC GGCCAACGGAAAATTGGCCGTCGGAAAAGTTATACGGTCAGCGGAAATAG AGGCCGAGCTAGTTTTTTTCGAGCTAGTTTTATTTCGGCGGTCGGACAAC TATTATTATTATTAAATTCCCGTGAAACTTCAGAATTTTGAGCTCTGAAC CGCGAAATTAAATTCCGCGAAAATTTCTTCCCGCGGAAATTTCTTCCCTT AAAGTACGCTACGATATTATCGTGAGATACACTCTGGTACACAGACTAGC GATCATACATACAGAAAATTAGCACAATCGATCGCAATCGATCTTAATCG ATAACAATCGCATTCAATCGATGGCTAATCGATAATAATCGAATTTAATC GGTGAAAATCGACACCAATCGATAATAAAATTTTACGTTCCTATCGATTG GCCATCGATTAGTAATCGATCGATCATCGATTAGTAATCGATCGATCATC GATTACGAACGACTTTTATCGATTGACATCGATTAAATCAACAATCGATG TTATCGATTGGGTACGCCTGGAAAAAAGAAGTTAAGATACTAATTTTAAA CCAGACCCAATCAATCAGTTACATCAATATGCCAAAAACATTTTGTTCAA CCACCTTCACTTCAAGATAGGCCACCATAGAATGAACTTCCTTTTATAGG ATGAACCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNTTGCACTCCATCACAGAGCCTATTTGAGATATTTTACTAACTAGCCC AGAGAAAAATTTTAAACCTTTATTATTTGAATGCATGCCTTTTTGATACT CAAATATAAAAAAATTAAAAAATTTAAACTCTGCGATGGAGTGCAAGGCT GAAAGCCACATGAATATGGTTCATACTATAAAAGGAACTTCATTCTATGG TGCCCTATCTTGAAGTGAAGGTGGTTGAACAAAATGTTTTTGGCATTGAT GGAACTGTCAATCGGACTTGTCGAACCAATCAAACAATCGAACTCCATCG AACAATAATTAAAGTTCGAACTTGGTAAAATTAATCAAACCTAATCAAAC ACTCACAATTTTTGAAGAACTTGTCGAACAAAATTGGATTTATATCGAAC TGATCGAAACGCAACCCATTGATCGAACTTAACCGAACACTCACAATTTT GTTAAAAAGCTTAGAGTTCGATTAATTTTGGGCTTTCAAGCAGACTTGCC AACATGAAATATTACCGTCAACTGCTCTAACTTGGGACGATTGGTCGAAA CATGGGACTGTTAGGGGAGCGCCGTCCATATTCATTTGACAACGCAAAAC GTCAAATTGACGTTGTGAAGGGATGGGGGGGGGTTTCAAAAGTTAGGTTT GATGTTATAAGAAATCAAAGGTATACCTTTTTGTGAAAATCGCGAATATT TGTAACCACCAACCACACTATACTTTATAAGCTTTCGAAAATATATTCGA GTATGAATTACATGAAAATTTGTTGCTCGCATAATCCCATTGGTTCGCGC TATGATATCATTACATCATATTTTTATTTTTTGAGAGGATAACGTCAATT TGACGTTATGCGTCGTCAAATGAATATGGACGGGTCCCCTTACCGTGAAG TCGGGTAACTAGCATCAGTGGAGGCAAACATGCATAGCCATCAAATGACT GACCAATCAAAGCAGCAAAATTTCAAAACAAATGAACTACGCAGCTCCGC TCGCTACTCTACTCTACCATTTTTTTTTTGATTTAATTTTAATGACCAGG CAGGTCATTCATTTTAGGGCTATGCATGTTTGCCTCCACTGATGCAAGTT ACCCGACTTCACGTTAATATCCTGGCCTGTATTTTCACTTACTGTTAAAT CTCTTTGACAACAAATTTGTTTTGATAACTCCACCAAGTTTATCAATCAT ACTTTCTGTCATAACATGTCACGATAACTTTTACTGATAGCGCACCCTTT TTAACTTTACCTATCGTAAGTTGGTCTAATTCCGACACCATTTTTTAGAG ACAGAAATAATATGAAAGCTTGAATCACTGATTGAAAAAGAATAATTCTC TCTGGCCATTAAGCAAAGAAAAACAGTTTCAACCTTTCTATCTATTTCAG CTGATAATTGTGGGGGGAAATTTGTTCGTTTTTTTGAGGTCGCTCAATTT TTTTAGTCAAAGCACTTGTTATACATTTTTGGAAAGCTAAGGGGTAGTGG AATCAAAATAACTTGGGTATACCTGTTGTATATTTTTGGAAAGCTCTCAA AAAATTTAAATTAGAGATATATTGCAAATATAGGCGATTTCTGTACCTAA CTTGAGATATTAACCCTTAAAAACAGTGTTTTTCAGCCAGAAACAGCTGT TTTGTTCAGTTTTTGCGCTTCTGGAAGCTCGATATCTCGAGTTAGGTACT GAAATCACCTATACTCACCTTATAATTGATAAATTATGAAAATATAGCCT ACTGTAAGGTATTTTCCTTCACATCCGCAACCCCAAAAAAACAATCCCAA AAGCTTTAATTCAAGTTTTGAAATTTAGAGGGACCCATGGGTGAGGAGGA GCTGCTTATTAAAAAATGTGTAGTAAAGAATTTTGATTATTGATTTTCAG TTTTGAACTATTTATAACTTTTTAATAGTCATTCTTTGATTATCTTTTTT TCTTGATTTTAGCCAAAGATCTATCGTGCTGTCATTGAAGATGTCATCAA AAATGTTCGGGAATCATTTCTCAATGAGGGGGTGGATGAGGCTATTCTCA ACGAGCTCAAGCAGGTAATTGCATGCAAATGTCTAACTTCACCAAGATTC ACCAAGTTTGTTGCAATACTTTTTTAATTACCAGATAAGTTTGATATAAT AAATCATTTTTTTGAATAGTTTTTAATTGAATAGAATTGAAGGAACTCAG AAAATGAGTGATCTTATTATGATGTTCTTTGAAGGAACTTAATCCGGCAC ATTTTATTAAAATCTATAGGATATCTGAAATTATATTTTCTTTTCAGCTC TGGGAAAACAAGTTACAACAATCAAGAGCCATAGATGTTATTCCTTCTGA TGTGAATGTACGAGTCAGTCTAACGTATCCACATAGCTCACAAACAGGTA AAAATTACCACAGGGAAATCACAGGGAAAGACAGGGATTGCCTAAGGGTA TTACAATTTACATCTGTACGATAACTAAATTTCAGATTTCTAAAGCTTAA AAATTAGTCGAGTCAGAAAGAGTGATACATTTTCTATCTAATCCTTATTT CAATGTATGTACTTGTTTTATAATTTAAAAATCTTGTCTCATCAATATTA AACTTAATAAACAAATTTATACAACATTCTATCAATTTACTCCAGCTGCA AGCTCTACACAATCCTCACTACCTACCACTGTGCAGCCAGCTCCAAAACC TGCTGCCCGTCCGCAAGCAACGGCTGTGGCACCTACAACAACCCCAACAC AAACTGTTTTTAGAAATGCAGCTGGCCAGCAGCAACAAGTTGTTTATGTT AGCAATCATCCAACTCTTGGTCATGTTGGGCCCATGGTATGTTCTAGTTC ATGTAGGGAAGAACCAGTGGGGTCCACGATTTATGAGCTATAAAATTTAA TCAGTGAGTTATAAGATATGTGAGATATATCCTTGCAGATCCTTGTGTTA TGCATTATGATTTCATTCTGAGAAGTCTTTTGGTTTAATTTCTCAATGGT CCCACTTATTTTTACCACAGACTGGAGCTGCAGTTCAAGCAACAATGGCT TTGCAAAATGCTGCAGCTGCTGCGGGCAGGGGACAACCCCAGGCAATCAT TCGACAACCTATCATGGGCATGCCCGGTCAGGTTATAGTCCAGGTGAGTA AAGTCCTTCATTAGTTTTTGTTTCAAGGATGGCCTTTAAAATTTCAAACC CTAGGTTTTTGAAGCTAGATCGGTCAGTAAATGAATTTTATTGATAGATT TATCATTCTTACAAGGCAACAGTTAATTAAACCTTACTGTTGAATTATTT CTTTTCAAAACAAAGATGGCCACTCAAAACTTTCCCTGAATTGTTTCCCA TTGTTGTGCTCTTATATGGTTAAGATAGTTTAAAGTGATTTAGAACACAC ACTTTCTTTATAAGAATATGCTAAGAATATCACCATCATGGGAAATATGC AACAGAACCTAAGAATGCCATTTTAGAACATTTTAAATGTCTGTCCCTCC TCAAAACATTAACAAAAATGTAATTTTATGCTTCAGGTATTACCAGGTAT TAATTGTTGGATTTAGGTCCTAACCTAAGAATACCATATTGAATATTTTT AAGATGATTCTCCTCGAAAAGTTGAGAATATCCATGATGACTATATGACT AAAAAAGTGTGAGTGGATAAAATGAAAAAAAAAAATTTTGGGGGGGGGGT AAAAATCCACTCACCATGATGATATTTTATTAACTTAGCAAAGTAATTTA CTTTTTGTACATTTTTATTTTACAGGCCCAGCCTGGAGCACCTAACAGTA AGTATTGTTTTAAGATTATAAGTCTATAGTATATTTGATATTTTTAAGTC CTGTTAAATGTTTTAGCTCTTTCACAGACACTTTTGTGTATTTAAACTTT GAAACTGAGACATTTGGTAAATTATATATGTTTACCTCTTCTTCTTTTTT TAGTTTATCAACACTTTCAAGGACATGTTGCAGCAGTCGGTCAGCGAGTG ATATACGCTCCAGCGACTGCTACTCCTGCTACAGTTGCTGCTGCAGCTGC CCAACCTGCACAAATTCAAGCTGCACAACAACAGCAAGCTGCAGCTGTTG CTGCTGCACAACGAACTCAACAGGTAGCAGCAGCACAAAGAACTCAACAG ATAGCAGCAGCACAAAGAGCTCAGCAAGCAGCTGCAGCGGCAGCAGCAGC TGGACAAAAGGTGAATTTTCATTTCAGTCATCTTCAGTTATTGATAAAAG AACATAACTTGCCTAGCCTTATTACTTCAAAAAGTGCAAGTTTGACGAGG ATACATCATCCATAATTTTTTTCTGGTGAAAAGAACTCTTGTAATATCTA ACAAACTGATCAGGTCTATGCAACTTCAGGCATTCTTTCATTCCAGCTCA ACTGAAGTTGAGAATAGGGCAGTTGTAGTATAGGTAAATCTTTTTTTAAT TATCTCTTTATTTTCCAGCCACCTAATCGTAACATAGTCCAAGTAGATGG AGCAAATGATGAACAAGAAACGTGCTGCTCCCCAACGACCTCGACCTCTA CAAAACCAAGGCAACAACCTAGATGTCGAAAACCATCCAAAGAAATTATA CTACAGTTTGACGGACCAAATGATTCAGATTCTGAGGATGAAGAAGAGGA AGAGGAAGAAGATTTTGACAATGTGGACATCCCGGTGGCTGCCGGTGGTA TTAGCGGTGGGGGTGTTGATATAGATGAACCTGGGGAGGTGAGTGAATGA ATCAATTTGATCTGCCTTGATTGGGGTTTTTTAAATTTCTTTCTAACAGT CATATTTTAATGATCTTGGTTTAGCCCAAAATTTCATTGGTCTTTTACTG CACTATGTAAAACGGGAAGCAGCAGGAAGTGGTAATTTATAATTACTATC AATTCCTCAAACTCCAAAGTTCCGCTGTGCTGCAATATCCTGCAACATTC CACAGGCATAATAAAAGGTGGAAGGTCTTGTTAGGTGCTTAAAACAGACA TAATATCAAGAAGGGGCACCAGTAGGTTGTAAGTTGGACTTTTGTATAGA GTTCTGAAGAGACGCTCAATAAAAAACCAAGCAATTCAACATCCTGCAAT TCAAAATTTCCACACATGTGTTTTGTTTACTATCATGTTAAGGAAGAGGA ACCGTTAAATTCTGAAGATGACGTCACTGATGATGAAGAACAAGCTGATT TGTTTGACACGGATAATGTTGTTGTTTGTCAATATGATAAGGTATTTCTT AATTAGTGAAATCTTATTTGAAGTACTTTATTCTTGCAAGGAAAGTTGTT CCCTTAAAGTATCAGAGGCTTTTGTGATTTTCAGGACTGCAGAAAGTATA CATGGGTCACAACTCAAAAATTAGATTACCCCCTTTGGACTTTTTTAACC TACCTCCGGGTACCCCGGTGGAGGTCCTATAAATTAACCGTTGTCCCGTT CGTTCGTTCGTCCGTTCGTCTTTTACCAGCTTTTCTCTAGTCTAGCAAGC TAGACGACTAATTTATACATAGTAGAAATAAAGCAAAAAATAATGAATGG AACAATTTTAGTCGTCTAGAAACCTTTGTGCACTAACTCCAAACAAAAGA AAAGTGTCAATATTGCAATTATAATCTTTTCCTGCTCAAAATAATTCTTG AGAAAAAAAATATGTTTGGATTTGTGTATTGAAAGTTTTTCATTTGAGTT TATTTCGTTTCGAGAGTTTGTTGTTGCTTGATAAATTGTTTTCTCGCTAC GCAAGTTTCTGCGTAGCTAGCCGGGGTATCTATAAGGCTGGAACACCGGA TTCTTCCAGTCGTTTATACAAACTAAATCCCGTATTATTATTATTATTAG TATTGGTATTATTAGTATTACACACATTATAAACGACTCCAGTCTAGCTT TTCTCGAGATTTGCTCATTAGTTTTTTCTGATTTTTGGCACAAAGATGCA AAATGGCAATGGCCAAAATGTGACGGAGCCTGATTTTCGAAAAAAAAGAT TTTGCCGGAAAAACTTGTTTTTTTGGCATTTTCTCGAGATTTTATCATTA TTTTTTCTGATTTTTTGCTCAAAGAAGCGTATTAACAATGCCCAAAACAT GGCCGAGTCCGATTTTTGAGAATTGTTTTTTTTTCTGGGTTTTCATTGGA CTTTTTCCTTATAATTGGCTGATTTTTCATTCAAAAACATTATTAATAGC AATGCCCACCATCAAGCATGTTTCAATTTTCAATAAAACTGATTTTTGAG ACCAGAACTTTCTATTTATTTTTTCCCCTACAACCCTTCCCTCTCCCCCC ATCAACAATCAATGATGAATTTATTGCGTTATGTATTTTCACTAAACTCT ATGTTTTCTGACCGATTTTTTCATTTTTGGACCTACCCCGGTCCTATAAA TTAACCTACTCAATTTTTTAATGAGATAGATGTTTTTTTTTTGCTCACGA AGTCTTGAATATGAAAGATTATNCGCTATATTTTCTGACTGATTTTTTTC ATTTTTGTCCTCACATTGCTATCTAACTTTCATCATCAGGTAGGTCCATT CAGCATCTAGCTTGTTTCGTTTATTGTGTCATTTATTCCAATTAAATTAG GTTGTATGGATTCTTCACAGTTTTATTTACTTTGCGAGTGGTGTAACATT ATTTTGATTTCTAAATTTTTCTTTACAATTTTTCTGCTTTCTAGATTGCA AGAACTCGGAATCGTTGGAAATTTCATTTGAAAGACGGTATAATGAATTT GAACTCTAAAGACTTTGTTTTTCATAAGGCCAATGGCGATGCCGAATGGT GATTTGTTTTCATTTGATGAAAATTGGTTTTGTTGCTCCCAATGTGTAGA ATACTATTTTCACGATGGGGGCCGGTCGCTGAAAATTACTTGGTCACATT GATTATTATGTCATTGTAGTAGACGCAAACAATCACAAAGAACTATCACA AACACGTTGTCTTATAATGATCGTCTTTGAATTGGCTCCGAGAGGGAAAA TTTGTTAAAAACAACTGAAACTTGGGATATATATTTCTATGTTTAAGAAA ATCTATAAGAACTGATTAACCTCGACTAATTAGACTAACAAGCAAGTGTT TCTTTTCGAAAACACTCAATTTTGAAAGAATGGATTACCAGCACAAGTTT TGAGTTTTATGGGCTGTTTTACTTTTGTGTTTTTTTTTCAGATTTTGTTT TTAGGGTAGATAACTTTATTTCCTTTCATGAAATTTTAATAGAGTGTAAA AAATGTTGTAGTCTCGTTGTAGATTTGTCATACTTTATTGAATACTATAT ACTGTAGGGCTCTTCCAGAAAAAAATTTGAATATGGCTGGTGGAGGATAT AATACTTTTTTGAAAACTTGCCCCAGCGCCCGAACATTGTGACTTTTGAC CCACCGGACAGCATGCCTAACCCCCAAACAAGCACTAGTTGACCCCCGGA CATGCNACTTTTGACCCACCGGACAGCATGCCTAACCCCCAAACAAGCAT TAGTTGACCCCCGGACATGCAAAATTACCCTCAAACAGAGCAAATATACT CCCACTCCCATGTACGAACATTTTCTGGAAGGGCCCATAGGTCCATAGAA TGATATAGTATCATACATGAGTAAAAAGGAAATAATGTTCTTTAAAGTGC CAGCCAATTCAACCAACGCTTTATATACGGAAAACTTAATTGACACTGAG TGGTTGCAACTAGCTTTTCGGCTTTGAAAATTTGGAATTTTTAAACTTGA GTGCTAAATGTTATTTTTTTTTTTTTTAACTTTTGTGTTAGCATCCCTGT TGTTTTATTTTGGTTGACCTTTTTCGGACATGAATTATTATAAAATACAT AAATGAATATTTAGCTTCAATCAATTTGCGTTTTGTAATTTTTTATAGAA AATTTTAATTTCTAAACATTTTATTTTTTCTTTGGTTAATAATGAATATA ATAAAGTATTTAAATAGATAAAATAAATTTAGCCAAAAAAACATTGCATT TTTTGTCCATGTTCTCAAATTTCCGTTAAAAATGGTTAGATTTAACTATT TAACGTAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029793XLOC_029793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046690-exon-scaffold_116-1575043694:65095..65168TCONS_00046690-exon-scaffold_116-1575043694:65095..65168Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:57755..57856TCONS_00046690-exon-scaffold_116-1575043694:57755..57856Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:57422..57521TCONS_00046690-exon-scaffold_116-1575043694:57422..57521Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:56983..57173TCONS_00046690-exon-scaffold_116-1575043694:56983..57173Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:56676..56798TCONS_00046690-exon-scaffold_116-1575043694:56676..56798Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:56022..56043TCONS_00046690-exon-scaffold_116-1575043694:56022..56043Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:55081..55865TCONS_00046690-exon-scaffold_116-1575043694:55081..55865Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:54578..54676TCONS_00046690-exon-scaffold_116-1575043694:54578..54676Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1575043694:51758..53124TCONS_00046690-exon-scaffold_116-1575043694:51758..53124Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:65095..65168TCONS_00046690-exon-scaffold_116-1510915933:65095..65168Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:57755..57856TCONS_00046690-exon-scaffold_116-1510915933:57755..57856Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:57422..57521TCONS_00046690-exon-scaffold_116-1510915933:57422..57521Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:56983..57173TCONS_00046690-exon-scaffold_116-1510915933:56983..57173Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:56676..56798TCONS_00046690-exon-scaffold_116-1510915933:56676..56798Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:56022..56043TCONS_00046690-exon-scaffold_116-1510915933:56022..56043Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:55081..55865TCONS_00046690-exon-scaffold_116-1510915933:55081..55865Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:54578..54676TCONS_00046690-exon-scaffold_116-1510915933:54578..54676Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1510915933:51758..53124TCONS_00046690-exon-scaffold_116-1510915933:51758..53124Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:65095..65168TCONS_00046690-exon-scaffold_116-1491911889:65095..65168Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:57755..57856TCONS_00046690-exon-scaffold_116-1491911889:57755..57856Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:57422..57521TCONS_00046690-exon-scaffold_116-1491911889:57422..57521Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:56983..57173TCONS_00046690-exon-scaffold_116-1491911889:56983..57173Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:56676..56798TCONS_00046690-exon-scaffold_116-1491911889:56676..56798Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:56022..56043TCONS_00046690-exon-scaffold_116-1491911889:56022..56043Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:55081..55865TCONS_00046690-exon-scaffold_116-1491911889:55081..55865Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:54578..54676TCONS_00046690-exon-scaffold_116-1491911889:54578..54676Clytia hemisphaericaexon
TCONS_00046690-exon-scaffold_116-1491911889:51758..53124TCONS_00046690-exon-scaffold_116-1491911889:51758..53124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:51758..65168 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6.88319e-09 0 0 0 0
Blast
BLAST of TCONS_00046690 vs. Swiss-Prot (Human)
Match: TF2AA (Transcription initiation factor IIA subunit 1 OS=Homo sapiens GN=GTF2A1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.707e-22
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 3
Query: 1434 DDEEQADLFDTDNVVVCQYDKIARTRNRWKFHLKDGIMNLNSKDFVFHKANGDAEW 1601
             DEE  +LFDT+NVVVCQYDKI R++N+WKFHLKDGIMNLN +D++F KA GDAEW
Sbjct:  321 SDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376          
The following BLAST results are available for this feature:
BLAST of TCONS_00046690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TF2AA5.707e-2273.21Transcription initiation factor IIA subunit 1 OS=H... [more]
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