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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046689 ID=TCONS_00046689|Name=TCONS_00046689|organism=Clytia hemisphaerica|type=transcript|length=3141bp
CGGGTATACATGTCACTAGCCTCGACcaatataatataataactGATGTG
GGAGGCGAAGTTTTTCTTAAGAACAGTTTTAGAAGCTTTTTAGAGTAGAA
ATatgtaaacaaaaagttttaaaaccaGATAGATGGAACATAAATTTCTT
GGAATGttataagaatttttgtttcatattttctgCAGAAGAAAATTAGA
TGGTTTGAGATGTTaagaaaccaaaaatattttatggTTCTGAGTAAAAC
CTTCAAATCATCttgtgaaaatctttaaaattggTTTTACACTGTCCTTG
CTTtaaaatttcattgttttcttaaaaagaggccaaaattttaaaatttt
aacttgaatatgTCAACTTTGGAAGAGTTTGGGCAAAATGATTTTGCTTG
CTAATGGACATAAAGGGAATCTACAGGCTGAACATCTTGAGCCATATAAT
CAGGATGTTCTCTTTAAagtaattgttcttataaactataAGCCAGATTA
TATGTGTGTACGTTAGGTTTAACAAGGAGAAAAAGGACGAATATGCTATT
TGATTTgaataaaattgataaagaagAGATTACTAATACCCCTTAAGTAA
ATTGACTTAAAACAGCACCAAGGAATGAGCGATATATTAAGAAAGAGTTG
ATGTTTGAAAAAACAGTGGCATTAATACGGTTATTGAGCAAAACAAATAT
CGTAATACCTTTGCCTTGGCGATAAAGTTGGCGTTAATAAATCAAAACAg
tatttattattatttgaaAGACGatgattttgcaattttgtacattttct
tGTATGGAATTAAAAGTGGATATAGTGGCTTCTAACTTGGCAGTGGTagt
tttgttgacatttttttCGATTCACTTATATAGTATTCTGCAGCGTAAAC
CTTTGATAGTATTTGTCAAGTTTCACAGCGTGTGTACGTGGTTTCCTCTA
GTGGCGAGAAATTTTTGGATCAAGGGATGAAATAATTGACTGGAATTTTT
AGAGCTGATACTATAGAAAAAGTCTCAAGCCAGTCTCAAGGCATCCACAG
AGTCAGTGTTTAAGGTGGCTTTTTGACAAAAACATGTTGGGGAGGAATTG
AGGAATCGTTACCCTGGCGCTCACGGGTTTCAGGGTTATAACCATAGATA
TCTtacataaaacactagatagagctactctgtatttctcAAGCAACGCA
GGTAAAGCAAAATAGTTCGCCATCTTTGTCGAAAGTAGGTCACagtaccg
gcaatttgttcaacaAAGCAAAAATAACCTGAATGGCGCGAATCGATGAG
GCGAAAGATAGGCTTAATCGATCACATTGCTGGAACCGAACTATGGTTTa
cttatcaaagatggcggattattttgattcaaataggGACGGAGTAGCTC
CATCTAATGTTTTATGTAAGATATATGTGGGTATAACGGTCACGAACATT
TGCTTCGATAATGACGGtaattacgtaacttaacaaaacatgaaaaacct
caATACAAGAATTAGATTGGTCAAAATTCCAGGGTTGGAGCTTCCCAAAA
TGACCTCATAAACACCCCCGTACAATGTTAATGTGAAATTAAACACTCTG
ACACTTTGTTtaggaaaatcaaaatatttagaaattcAATTTGCATGTTA
TTCTATGTGTATGGTAATTTGAGCCAATAGAGAAGAACTGAAAATACACA
AGTAGAAGAAAATGTTGGCAACACTATCGATCAGTAAGGAATACCACCAC
ACAACTACAACCAACAACACTTACAACCTTGGCGACACTATGAGCGATGA
CCCCAACAATAACAACCACTTGATAAGAACTGACAGTAAAgttggaaaat
tggtcaaaggAAAATTGTTGAGGTACGCAAGAAGAAGGAGATTGCTTTGT
AAAAACGGGATGTATTTGGCAATTGATAAAAACGGCGTCCATGGCACCAA
AGATCCAAATAATCCTTACGCCGAAATACAGGTCCTGTCTATCGGTTCCG
ATATGTTGGCTTTGTGGGGTACGCGAGCTGGATTATACCTAGCAGTCGAC
ACAGAGACAGGCAAAATATATACAACGTCAGAGGAAGGAAAACATTGTGT
TTTTATTGAGACATTCACGAAGGATTTTAACAATATATTCGAAAGTTATA
AATCAGTTTATGATAACCAAGCTAAATATATCGCATTAAACTCACAAAAT
AAATTGGCAATGACAGATCACAATGAAGCAAAGCCAGATAGGAATGGAAA
GTTTATTTGGGAATTGGTAGATAAATAGACGTTATAATTACAGGGAAAAG
AGATCAGATGGATGAAATCGAAAAGcgaattttggggaaaattgaGACTC
CAAGGTAAATACTACCTACCGGTGGATCTAAAAGGATAAAGCATATTCTG
CAATGCCACCTGTTGCAGAAATTATGTGGTTGTGAAGAAAtggacttttt
ttttaaaacaatcatATGCAAAGGTTTTAAAGCATCTTCTGGAAAAGACC
AATAAAACCTTCATCGGCAAAATATCAATGATGAAGTTAACGTgtaaata
ttgtaaatttttattatatttatggtattaaaacttaaaagggtgtaaag
taaaaataaatcataatgTTTTATTTCAGTGTTGGGTTGGTCTTTACTAG
acaatttcttttataagaatggtgtttttcatttgatcatggatattctt
agcattttggggaaaattgtcttaaaatattcttatagtaTATGTATTCT
AATGTTAGGGTCGAAATTCTATCTAaatttaacatgtaatacaCACACAG
ATGAAGCATAAATTGGCATATTTTGTGACGAGCCTTACTGGGGATAATTG
ACAGTTTGCACTTAAAAATGCTCTACAAAAGGCTTTCCTAGGTTCTGTTG
CCAATATTTCCATGATAgtgatattcttatttttagccaattttatcatg
aatattcgtataaagtatattcttatcaAAATAAGCGTGTATTCACATGG
GGATAGATAGGGTATCATGGCAGCGATGCACTTTTAAACTATTTTATAAT
AGTTTTTGACACTCAAATACTTATTTAAAATGATACAAAGGGTTCAGGCA
AGAATGAATAAATGTAAGCGAATTCTTCTATGCAGTGTCAG Run BLAST on NCBI protein sequence of TCONS_00046689-protein >TCONS_00046689-protein ID=TCONS_00046689-protein|Name=TCONS_00046689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MLATLSISKEYHHTTTTNNTYNLGDTMSDDPNNNNHLIRTDSKVGKLVKG
KLLRYARRRRLLCKNGMYLAIDKNGVHGTKDPNNPYAEIQVLSIGSDMLA
LWGTRAGLYLAVDTETGKIYTTSEEGKHCVFIETFTKDFNNIFESYKSVY
DNQAKYIALNSQNKLAMTDHNEAKPDRNGKFIWELVDK Run BLAST on NCBI transcript from alignment at scaffold_116:23048..28364- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046689 ID=TCONS_00046689|Name=TCONS_00046689|organism=Clytia hemisphaerica|type=transcript|length=5317bp|location=Sequence derived from alignment at scaffold_116:23048..28364- (Clytia hemisphaerica)
CGGGTATACATGTCACTAGCCTCGACCAATATAATATAATAACTGATGTG
GGAGGCGAAGTTTTTCTTAAGAACAGTTTTAGAAGCTTTTTAGAGTAGAA
ATATGTAAACAAAAAGTTTTAAAACCAGATAGATGGAACATAAATTTCTT
GGAATGTTATAAGAATTTTTGTTTCATATTTTCTGCAGAAGAAAATTAGA
TGGTTTGAGATGTTAAGAAACCAAAAATATTTTATGGTTCTGAGTAAAAC
CTTCAAATCATCTTGTGAAAATCTTTAAAATTGGTTTTACACTGTCCTTG
CTTTAAAATTTCATTGTTTTCTTAAAAAGAGGCCAAAATTTTAAAATTTT
AACTTGAATATGTCAACTTTGGAAGAGTTTGGGCAAAATGATTTTGCTTG
CTAATGGACATAAAGGGAATCTACAGGCTGAACATCTTGAGCCATATAAT
CAGGATGTTCTCTTTAAAGTAATTGTTCTTATAAACTATAAGCCAGATTA
TATGTGTGTACGTTAGGTTTAACAAGGAGAAAAAGGACGAATATGCTATT
TGATTTGAATAAAATTGATAAAGAAGAGATTACTAATACCCCTTAAGTAA
ATTGACTTAAAACAGCACCAAGGAATGAGCGATATATTAAGAAAGAGTTG
ATGTTTGAAAAAACAGTGGCATTAATACGGTTATTGAGCAAAACAAATAT
CGTAATACCTTTGCCTTGGCGATAAAGTTGGCGTTAATAAATCAAAACAG
TATTTATTATTATTTGAAAGACGATGATTTTGCAATTTTGTACATTTTCT
TGTATGGAATTAAAAGTGGATATAGTGGCTTCTAACTTGGCAGTGGTAGT
TTTGTTGACATTTTTTTCGATTCACTTATATAGTATTCTGCAGCGTAAAC
CTTTGATAGTATTTGTCAAGTTTCACAGCGTGTGTACGTGGTTTCCTCTA
GTGGCGAGAAATTTTTGGATCAAGGGATGAAATAATTGACTGGAATTTTT
AGAGCTGATACTATAGAAAAAGTCTCAAGCCAGTCTCAAGGCATCCACAG
AGTCAGTGTTTAAGGTGGCTTTTTGACAAAAACATGTTGGGGAGGAATTG
AGGAATCGTTACCCTGGCGCTCACGGGTTTCAGGGTTATAACCATAGATA
TCTTACATAAAACACTAGATAGAGCTACTCTGTATTTCTCAAGCAACGCA
GGTAAAGCAAAATAGTTCGCCATCTTTGTCGAAAGTAGGTCACAGTACCG
GCAATTTGTTCAACAAAGCAAAAATAACCTGAATGGCGCGAATCGATGAG
GCGAAAGATAGGCTTAATCGATCACATTGCTGGAACCGAACTATGGTTTA
CTTATCAAAGATGGCGGATTATTTTGATTCAAATAGGGACGGAGTAGCTC
CATCTAATGTTTTATGTAAGATATATGTGGGTATAACGGTCACGAACATT
TGCTTCGATAATGACGGTAATTACGTAACTTAACAAAACATGAAAAACCT
CAATACAAGAATTAGATTGGTCAAAATTCCAGGGTTGGAGCTTCCCAAAA
TGACCTCATAAACACCCCCGTACAATGTTAATGTGAAATTAAACACTCTG
ACACTTTGTTTAGGAAAATCAAAATATTTAGAAATTCAATTTGCATGTTA
TTCTATGTGTATGGTAATTTGAGCCAATAGAGAAGAACTGAAAATACACA
AGGTAATGATCTTCTTTTTTGTATTTAACGGTCGTTCAGCACAACAAATA
TAGAACCAACATTGTTTCACTAAGGTTTATTTTTCGATGTTTTTTATGTT
AAATGAAAGCTAAGGCAGGTCAGCAGGAAGGGGGACGGGTGAAAGTGAAA
GTTTAGTGGAATATAACAGACTTAAAGCTTTGCAACATTTCACCGAATTG
AATAAAATAAAGATTATTTTGACTTAGGATAGGAAGACCTATCAAGATCT
ATTCTCAAGCTCTTCAAAGTCATGAAAGAAAACGTAACAAGCTTCGATAG
TTTTTCTGATGCCAAACTCAAAGCTGTGATAAGAGTGACTTGAGGCCAGT
AAACAAATCACACAGAAATTGAATGATCGATTGCTCTGCGCAGAAAATCA
CAAACAATCTCTTGTCCTCTTAACGAGCATTCAAAGAAACGATAAGCTGT
TAACAAATCCTGTAATAAGCCTCACTTGATTAACATGCTAAGCGATCTGA
TTAGTCCTGATTACACTGCAATTTGATTTGATTTGATAAAAGAAAGTAAT
AGTAGGACAAGTACACCCCCTTCTCACAGACCCGGTAGGATTTTTTCAGC
CGGTGGGGATAAAAAATAACGGACTGAAACTCGACGGGGATTGATGTTCC
AATATTTTTATGGCTGGGGATTCTTTTGTTTTCGAGTCAAAAAATTCAGC
TGGGGTGGGAAAAAAGCATTATATCTTGTAGTGAGGATTGGTTTATTTGA
TTATTTTCAGTGGGGACAAAAATTGGAAAATAATTCTCCACCGGGGACGA
TTTTTTAGACAATTTCTCCAGTGGGAAGGGTTCTCAGTGGGTCTGTGAGA
AGGGGGTGTAAAAGTTTAGTTTCACTTTTATACTACTCGACCTCGGTCTT
CTACCAATTAGAACTATCATTATAAACATATTAGTCACGGACCTCGTGTA
TAGGGGGGACCAGTGGGGGAATGGGCCCTACAGATTTTGCAGACTAATTT
TGTTCTTCAAGTCGAAAACCTTTTTTTTATAAAATCAAATAGCGTTTAAG
GGTGTTTAGAAGGTGCAAAAAGTGAAAAATTTTCTTCGTCGCCCAAACTT
TTTACCCATGGGCTATAATTTAATGATGGAATTTTGTATGCAAATTACAC
GTTTTTTTAATAAGAACCTCCAAATTCTTTGAAGCCTTCGGATGTTCATA
ATTTTTTTAGTTTTAAGCTTAAAAATGTTCTTAAAGTGTTCTTATTTTCA
TCATTTTCTGAGCACCTTTGTCCATTTCCTTAGGAATCAGATGTTTTAGA
AAAATAATCTATCGAAGCCTATGTTCTTATATAGTTTGTTCTTATGAAAA
AAAAACATGTACGTTGTCTTGTTTTGATGGTCTGCTATTGGATATAATGT
TGCATTTTCAAAGATTTTATAGCATCCTCATTTCTCTATCTCATGGTTAA
AAAAGACTCTGACAAAGCACGAGTACAAGAAAAATAGCATTTGAAGAATC
ATCTCAGTTAAACAGAGCGGCTAAACAACTACTGTAATTACAATGTAAAT
TGGTTTCTACTGCTCAAAGAATTTGTGCGTTTTATCTTAATTATTTTTCT
TCTGTATCGTAAAATTGAATTTATTATAACGAGCACTGTTAATTGTTAAT
TTTTGCCAGCGAGAACAGTTTCAAAGATAAAGGCTAACAGGTTTAAGTTG
GATTACCTTGGCTACTTTATATGGTGTAGGACTGATAAGCAGCTTATTGC
AAAGACGATAGAGAGCAATCATTATCCAAATAAGGTTTCGGCTGATTTTA
ATCTGTTCTCCTGCACTGTGTGGTTTGGTGAAGTATTTTGTAACCCGTAC
TAAGGAGTTCGTGTGGAGTTTAAACTATTCCAAAAGGAAATACTTGCACT
GTTTAGACGCACTGCGTTTGTAAAAAAATAACGAAATTTCTTTAAAAGGT
TGATTAATAATTTTGTTTCTGTATGACATTTATTCAGTAGAAGAAAATGT
TGGCAACACTATCGATCAGTAAGGAATACCACCACACAACTACAACCAAC
AACACTTACAACCTTGGCGACACTATGAGCGATGACCCCAACAATAACAA
CCACTTGATAAGAACTGACAGTAAAGTTGGAAAATTGGTCAAAGGAAAAT
TGTTGAGGTACGCAAGAAGAAGGAGATTGCTTTGTAAAAACGGTGAGTTT
TTTTATTCGATAATTCAAACATCCAGAAGAAATTCTCAGTCCTTTTAAAG
TTTTGCAAGGTCTTCGTAACACCCGACAAAAGAAAAGTCAGCTTTCTGTT
GTCTCTCTATCGGTCACAATAAAAGGGTCAGCAGGATCTTCCTGAGAGTC
CAAAAAATGAGAAATATTAATCTCGATTTATAGGGATGTATTTGGCAATT
GATAAAAACGGCGTCCATGGCACCAAAGATCCAAATAATCCTTACGCCGA
AATACAGGTCCTGTCTATCGGTTCCGATATGTTGGCTTTGTGGGGTACGC
GAGCTGGATTATACCTAGCAGTCGACACAGAGACAGGCAAAATATATACA
ACGTCAGAGGAAGGAAAACATTGTGTTTTTATTGAGACATTCACGAAGGA
TTTTAACAATATATTCGAAAGTTATAAATCAGTTTATGATAACCAAGCTA
AATATATCGCATTAAACTCACAAAATAAATTGGCAATGACAGATCACAAT
GAAGCAAAGCCAGATAGGAATGGAAAGTTTATTTGGGAATTGGTAGATAA
ATAGACGTTATAATTACAGGGAAAAGAGATCAGATGGATGAAATCGAAAA
GCGAATTTTGGGGAAAATTGAGACTCCAAGGTAAATACTACCTACCGGTG
GATCTAAAAGGATAAAGCATATTCTGCAATGCCACCTGTTGCAGAAATTA
TGTGGTTGTGAAGAAATGGACTTTTTTTTTAAAACAATCATATGCAAAGG
TTTTAAAGCATCTTCTGGAAAAGACCAATAAAACCTTCATCGGCAAAATA
TCAATGATGAAGTTAACGTGTAAATATTGTAAATTTTTATTATATTTATG
GTATTAAAACTTAAAAGGGTGTAAAGTAAAAATAAATCATAATGTTTTAT
TTCAGTGTTGGGTTGGTCTTTACTAGACAATTTCTTTTATAAGAATGGTG
TTTTTCATTTGATCATGGATATTCTTAGCATTTTGGGGAAAATTGTCTTA
AAATATTCTTATAGTATATGTATTCTAATGTTAGGGTCGAAATTCTATCT
AAATTTAACATGTAATACACACACAGATGAAGCATAAATTGGCATATTTT
GTGACGAGCCTTACTGGGGATAATTGACAGTTTGCACTTAAAAATGCTCT
ACAAAAGGCTTTCCTAGGTTCTGTTGCCAATATTTCCATGATAGTGATAT
TCTTATTTTTAGCCAATTTTATCATGAATATTCGTATAAAGTATATTCTT
ATCAAAATAAGCGTGTATTCACATGGGGATAGATAGGGTATCATGGCAGC
GATGCACTTTTAAACTATTTTATAATAGTTTTTGACACTCAAATACTTAT
TTAAAATGATACAAAGGGTTCAGGCAAGAATGAATAAATGTAAGCGAATT
CTTCTATGCAGTGTCAG Coding sequence (CDS) from alignment at scaffold_116:23048..28364- >TCONS_00046689 ID=TCONS_00046689|Name=TCONS_00046689|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_116:23048..28364- (Clytia hemisphaerica)
GGATGTATTTGGCAATTGATAAAAACGGCGTCCATGGCACCAAAGATCCA
AATAATCCTTACGCCGAAATACAGGTCCTGTCTATCGGTTCCGATATGTT
GGCTTTGTGGGGTACGCGAGCTGGATTATACCTAGCAGTCGACACAGAGA
CAGGCAAAATATATACAACGTCAGAGGAAGGAAAACATTGTGTTTTTATT
GAGACATTCACGAAGGATTTTAACAATATATTCGAAAGTTATAAATCAGT
TTATGATAACCAAGCTAAATATATCGCATTAAACTCACAAAATAAATTGG
CAATGACAGATCACAATGAAGCAAAGCCAGATAGGAATGGAAAGTTTATT
TGGGAATTGGTAGATAAATAGATGTTGGCAACACTATCGATCAGTAAGGA
ATACCACCACACAACTACAACCAACAACACTTACAACCTTGGCGACACTA
TGAGCGATGACCCCAACAATAACAACCACTTGATAAGAACTGACAGTAAA
GTTGGAAAATTGGTCAAAGGAAAATTGTTGAGGTACGCAAGAAGAAGGAG
ATTGCTTTGTAAAAACGGGATGTATTTGGCAATTGATAAAAACGGCGTCC
ATGGCACCAAAGATCCAAATAATCCTTACGCCGAAATACAGGTCCTGTCT
ATCGGTTCCGATATGTTGGCTTTGTGGGGTACGCGAGCTGGATTATACCT
AGCAGTCGACACAGAGACAGGCAAAATATATACAACGTCAGAGGAAGGAA
AACATTGTGTTTTTATTGAGACATTCACGAAGGATTTTAACAATATATTC
GAAAGTTATAAATCAGTTTATGATAACCAAGCTAAATATATCGCATTAAA
CTCACAAAATAAATTGGCAATGACAGATCACAATGAAGCAAAGCCAGATA
GGAATGGAAAGTTTATTTGGGAATTGGTAGATAAATAGATGTTGGCAACA
CTATCGATCAGTAAGGAATACCACCACACAACTACAACCAACAACACTTA
CAACCTTGGCGACACTATGAGCGATGACCCCAACAATAACAACCACTTGA
TAAGAACTGACAGTAAAGTTGGAAAATTGGTCAAAGGAAAATTGTTGAGG
TACGCAAGAAGAAGGAGATTGCTTTGTAAAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046689-exon-scaffold_116-1575043694:26663..28364 | TCONS_00046689-exon-scaffold_116-1575043694:26663..28364 | Clytia hemisphaerica | exon |
| TCONS_00046689-exon-scaffold_116-1575043694:24473..24677 | TCONS_00046689-exon-scaffold_116-1575043694:24473..24677 | Clytia hemisphaerica | exon |
| TCONS_00046689-exon-scaffold_116-1575043694:23048..24281 | TCONS_00046689-exon-scaffold_116-1575043694:23048..24281 | Clytia hemisphaerica | exon |
| TCONS_00046689-exon-scaffold_116-1510915933:26663..28364 | TCONS_00046689-exon-scaffold_116-1510915933:26663..28364 | Clytia hemisphaerica | exon |
| TCONS_00046689-exon-scaffold_116-1510915933:24473..24677 | TCONS_00046689-exon-scaffold_116-1510915933:24473..24677 | Clytia hemisphaerica | exon |
| TCONS_00046689-exon-scaffold_116-1510915933:23048..24281 | TCONS_00046689-exon-scaffold_116-1510915933:23048..24281 | Clytia hemisphaerica | exon |
| TCONS_00046689-exon-scaffold_116-1491911889:26663..28364 | TCONS_00046689-exon-scaffold_116-1491911889:26663..28364 | Clytia hemisphaerica | exon |
| TCONS_00046689-exon-scaffold_116-1491911889:24473..24677 | TCONS_00046689-exon-scaffold_116-1491911889:24473..24677 | Clytia hemisphaerica | exon |
| TCONS_00046689-exon-scaffold_116-1491911889:23048..24281 | TCONS_00046689-exon-scaffold_116-1491911889:23048..24281 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:23048..28364 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008083 | growth factor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008083 |
growth factor activity |
Blast
The following BLAST results are available for this feature:
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