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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046680 ID=TCONS_00046680|Name=TCONS_00046680|organism=Clytia hemisphaerica|type=transcript|length=496bp
NNTGGGCGGATGATGCAGCAGCTGACAACCTTGGTGGTACCATGGGCTTC
cttaaagtgactgaaaataaTAATGTAATATTGAACCATAACCGTGTCGA
TCAAAGCTGGAAACTTGCGTTATACAATACTACAGCTTCTGCGCCATTTA
CGctcACCTTTGAAGGACAAGCATTGACTCGATATTCTGATCATGCTATT
GACGATCTTCGATTTTATGAAGTTGACTGTGGAACTTATCAATCTATGTA
CAAGCCGATCCCATCGAACTAAACGGTGAATACCCCGTCTCATGCTATCA
AAAAAAGTCACAAGAACATCAcaaatacaaatttttttatttaatagcAA
TTTTTGTTTGTCGTTTTTTATACAATTTAAATATGTTAACTTCTTTCCTG
AGTTATATTTGTATGTTGTTTAATCTTCTAAATATTCCATAAAAATTAtt
acctttgaaaaaaaaacttgatgtTTGGCTTTAATTTACCTTGCCC Run BLAST on NCBI transcript from alignment at scaffold_116:861461..862377+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046680 ID=TCONS_00046680|Name=TCONS_00046680|organism=Clytia hemisphaerica|type=transcript|length=917bp|location=Sequence derived from alignment at scaffold_116:861461..862377+ (Clytia hemisphaerica)
NNTGGGCGGATGATGCAGCAGCTGACAACCTTGGTGGTACCATGGGCTTC
cttaaagtgactgaaaataaTAATGTAATATTGAACCATAACCGTGTCGA
TCAAAGCTGGAAACTTGCGTTATACAATACTACAGCTTCTGCGCCATTTA
CGGTAATTTTTTCTCCGTTCATCATTTTATGCTTGTATTGGATATAAGTA
GATCCGGGTttggaaaaagttttctttgtgtgttttatgACTTTTGATAA
CTTTCCAATCCAAATATCGATGATTATAGCTACGATAAGCCCCGTGTTAT
CTCAGTGTATGCTTTCTAAGGCCTTGATGTTTTCATCAAATTATTAGCAG
cgtcttcggttttaaatgaatttaaatttttttcatttttcagctcACCT
TTGAAGGACAAGCATTGACTCGATATTCTGATCATGCTATTGACGATCTT
CGATTTTATGAAGTTGACTGTGGAACTTATGTAAGTATCATATTCTTACA
GTTGATCTTCTACAGAATTATTTTATATTCCTACATTTTAAACCATTTCA
TCGCGTGAGATGTTGGTAAGAAATGCTTAGGATTTTGCATATTGATACTC
TTTTCCTAAAGATACCATTATATCACGTTTgatatttatttaattttttt
tacgtttCAGCAATCTATGTACAAGCCGATCCCATCGAACTAAACGGTGA
ATACCCCGTCTCATGCTATCAAAAAAAGTCACAAGAACATCAcaaataca
aatttttttatttaatagcAATTTTTGTTTGTCGTTTTTTATACAATTTA
AATATGTTAACTTCTTTCCTGAGTTATATTTGTATGTTGTTTAATCTTCT
AAATATTCCATAAAAATTAttacctttgaaaaaaaaacttgatgtTTGGC
TTTAATTTACCTTGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046680-exon-scaffold_116-1491911889:861461..861612 | TCONS_00046680-exon-scaffold_116-1491911889:861461..861612 | Clytia hemisphaerica | exon |
| TCONS_00046680-exon-scaffold_116-1510915933:861461..861612 | TCONS_00046680-exon-scaffold_116-1510915933:861461..861612 | Clytia hemisphaerica | exon |
| TCONS_00046680-exon-scaffold_116-1575043694:861461..861612 | TCONS_00046680-exon-scaffold_116-1575043694:861461..861612 | Clytia hemisphaerica | exon |
| TCONS_00046680-exon-scaffold_116-1491911889:861854..861940 | TCONS_00046680-exon-scaffold_116-1491911889:861854..861940 | Clytia hemisphaerica | exon |
| TCONS_00046680-exon-scaffold_116-1510915933:861854..861940 | TCONS_00046680-exon-scaffold_116-1510915933:861854..861940 | Clytia hemisphaerica | exon |
| TCONS_00046680-exon-scaffold_116-1575043694:861854..861940 | TCONS_00046680-exon-scaffold_116-1575043694:861854..861940 | Clytia hemisphaerica | exon |
| TCONS_00046680-exon-scaffold_116-1491911889:862121..862377 | TCONS_00046680-exon-scaffold_116-1491911889:862121..862377 | Clytia hemisphaerica | exon |
| TCONS_00046680-exon-scaffold_116-1510915933:862121..862377 | TCONS_00046680-exon-scaffold_116-1510915933:862121..862377 | Clytia hemisphaerica | exon |
| TCONS_00046680-exon-scaffold_116-1575043694:862121..862377 | TCONS_00046680-exon-scaffold_116-1575043694:862121..862377 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:861461..862377 + |
Blast
The following BLAST results are available for this feature:
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