Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046666 ID=TCONS_00046666|Name=TCONS_00046666|organism=Clytia hemisphaerica|type=transcript|length=1417bpRun BLAST on NCBI transcript from alignment at scaffold_116:647135..656173+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046666 ID=TCONS_00046666|Name=TCONS_00046666|organism=Clytia hemisphaerica|type=transcript|length=9039bp|location=Sequence derived from alignment at scaffold_116:647135..656173+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00046666 vs. Swiss-Prot (Human)
Match: DNAS1 (Deoxyribonuclease-1 OS=Homo sapiens GN=DNASE1 PE=1 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 2.476e-41 Identity = 85/260 (32.69%), Postives = 134/260 (51.54%), Query Frame = 3 Query: 576 SATIATFSINRFNQKKYENNEVKEYLLKILSRYDFIFIQEVQDESEEFIHLFIEELKGMTGKSYKYKLGKASGRKSKKNQLMFLYRDSLFTLIDHYQYQD-----NDDKFERQPFIAKFRSNKLEVEEFAVIGVCLHYDSVEAEINHLASVHEEMKNFWGDIPTLIMGNFMTGGSHISKTKLRETALQKDSNYVWFV-DNIDTTVLKNKYCYDRIIGYGNIMEN-IQLDSVKAFRFDDEFGLSMDEAKAITDHYPVEVVI 1334 S IA F+I F + K N + Y+++ILSRYD +QEV+D + ++ L +Y Y + + GR S K + +F+YR + +D Y Y D +D F R+P I +F S EV EFA++ + AEI+ L V+ +++ WG ++MG+F G S++ ++ L + W + D+ DTT YDRI+ G ++ + DS F F +GLS A+AI+DHYPVEV++ Sbjct: 22 SLKIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALVQEVRDSHLTAVGKLLDNLNQDAPDTYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYYYDDGCEPCGNDTFNREPAIVRFFSRFTEVREFAIVPLHAAPGDAVAEIDALYDVYLDVQEKWGLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDSADTTATPTHCAYDRIVVAGMLLRGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEVML 281 The following BLAST results are available for this feature:
BLAST of TCONS_00046666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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