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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046639 ID=TCONS_00046639|Name=TCONS_00046639|organism=Clytia hemisphaerica|type=transcript|length=182bp
aaaaatattgctcGGTCTTTTCGCTTTGATGGTGGATTTTAGTCACGAAA
GAGACTTTACAGCATACAGGAGTCTCAAGTTAGCTCACAACACAAACAAA
TTGTTGCTCACATATTGGTTTGCTCAGTCGGTGAAGATTGCAAGTCTCTC
AATCAAAATCACATCAAGCTTGTTCTAAAGCT Run BLAST on NCBI transcript from alignment at scaffold_116:264745..274324+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046639 ID=TCONS_00046639|Name=TCONS_00046639|organism=Clytia hemisphaerica|type=transcript|length=9580bp|location=Sequence derived from alignment at scaffold_116:264745..274324+ (Clytia hemisphaerica)
aaaaatattgctcGGTCTTTTCGCTTTGATGGTGGATTTTAGTCACGAAA
GAGACTTTACAGCATACAGGAGTCTCAAGTTAGCTCACAACACAAACAAA
TTGTTGCTCACATATTGGTTTGCTCAGTCGGTGAAGATTGCAAGACTCTC
AATCGAAATTACATCAAGCTTGTTCCAAAGAGAAGTACCAACGCTGGTTA
TGGCGTTTTTTACGACCATTCATCAGGACGATGGTTTTTCATTGGATTCG
TGGTGGACAGAGCAAATCCACAAGGTGAAATTGTTGTTTACTCTGGATTT
GTAGACGGAACGGAACCTGACGGGACAACTATATACTGCGATCAAGAATC
ATTTGTAAAACTCAGAATTATGTTGCCACCTATAGTTAATAACTCTCGGC
GCTGCAGAAAGTGCGGAACTTTTCGCATATGTAGATTGGTGGCAAAGACG
TTGGTCATTATATCACATTCGAGTAACGATTGCTGCACCTTCAAGTCATC
AATCTTAGATCTTGTatgtttcaatgaaaatgaaatatttcattTAAAAC
GGATTTCTATAAAGCATACTTTTGTGTTCCCTTCTCTTTTTCTCGATGAT
ATCGATGCTTCCATTGTTTACTTATGTGTTCCAGAAGAGGAGACATAGTA
AAATGCTACCGTCGTCAGGTCATAGTAAAGAAACTGTTAGGCTACATTTA
AATGTGATTGATTTCTCTGGAAATTATTTAAGAAATGAAACTTTAGATGT
AGATAATGTCTTAAGTATTCTTCATATCAGGAAGTCATTTTTTCTGACAC
ATTCCTTTTCCTATGGACAACATTCATTTCTTGAAAACTTTCAGTATTAC
TCTTTCTGGGATAACCGTGTTAAAAACAATCACTTTGCCAACATTAAATT
TAGTGATTAGAAGCAGTTTGAAAAGCTCGATGCATGTAGTGAGCTATTTT
AACCAAGCATTAGTGTGTACTATTGTTCGAGTTGAAGGATTCTTGGCAGA
AAAACCCTCTGCAGTTTGGTCTCATACCCTTACAAcaggagaacaaaagg
ttttatacagaagttctgaaaatgaacatattcatcattttgatttgaat
tgggATTTGAGTGAAATTGCAGTTTGGACTTCAAATGTTGGTAAACGAGA
GATTCACCTGAAGATTGTGAGACTTCCATTTCATGATATCACTTTGAAGC
ATTTTGCAAGAATGGCTTGTTTGAGGTCCTTTGGGGAGGAATATTTAAAC
GGGCGACTTCcagtttgtttacaaagatATCTTGGAATTTCTGAATAatg
attatgaaattgttttatCTCTTTataatctttaaactttatAATCTATA
ATTTTTTGAGGATCGAAAAATAAATTATGAAGAATTTGAGAAACATTTTA
AGTCCAGGGGGCGATTTCGagaatctgaccatattttaccgaaaatggtc
aaaatttacgTGTAaaatgtacgtaaaattttacttaagaccttgaaggg
TGAGGAATTCCCCTAAGCTTAAGTAGTGtttaaggccttatgtagagttt
gcttacgttcaaaaagttttgaacggaaggaaaatccacgtaagaccctc
ttaaccaacaaaaactctacataatgtcgaggaaattccccaaaaaaggc
cttacgaacgattttccgtgaagtaaaagtaaaattttacgtgcatgtgg
aAAAAGCTTAAGGATCGATTCCTCGCTCAAATTTgactaaattttctctg
cactgtaagggtctgattttaaaggcctaattttgggccgcattTTGGTT
CCAAcgagacctgtgttcttttcgctTTTACAAATGCCGAATTCCCCAAA
TTTATTCGAGGAGATTAAAATGTGACGTTTCCATAATTTTAACAtccaaa
ttaattatttttctacCATATTGAACATAGTTGGCCTAgacacaaaaata
aaattacgCACAAATACAAGCGACTTTTTATAACGTTTTAAGGCCAATCC
AGGCTACATGTAAACAAAATTGAAACCAAAACACTGTTATTAATTGGTTT
GCATCTTCACAAAATGAACTCAAGACAGTCAAGAAGACCTACAGGTCAGT
ACGACTATGGAGACGATTCCAGTCAAGATACCCAAACCTTCGAAACCATT
GATGAAATGGAAATGAGCCTGGGGATGGGTATCTACCCTGAGAAAGTTGT
TGATGGGTACAGTGATGAAGGCAGAAGCGATTGGAGCCAAACCAattaca
cacccctgtctcagtaacccaTTAGGTCCTAAAAGTTCACCGGGGTGACT
TTCAAATGAGAAATATCCCCGGGGTAGAGATTTCAGTCGCTGGGTTAAGA
AAATAGGTATTTTTTTAATACCGGGCAAAGTCAAAAGTCAAGATTTTTCC
CTGGGTTTGTGCTATTTATAGCACTTTAGAAAAATCAGATTTCGTCGGGG
TTTTTGATAAAGTTCTCGTTTTTTTCGTGGGTTGAGATTTCCATTGTTCT
TCACTCGATTTTTACACCGGGTTATCGACCGGGGCGAATTTGACtgggtc
actgatacaggggtgttattaCCAGCCAGCCTTCAAGccgaatgaaaaaa
aaaacagtttgaaaatggtGATTAAAGCTCCACCTTCAGATCCTAATGGA
TAACAGAAAAAACGCATAAGAAAAGCAAACAACAAACAGAAACAAAGGAA
AATGACGAGCCACCAGctaagaaacaaaagaaaaaggaggaaaaggaaTC
CTATTTCTTTTTAGATGCTGCTACCCATTCCCTTCTGGAGGCATACAAAA
ATTACACCTCTTTGATGACTTCTGGAAAGTACAGAAGAAAAACAGGTAag
tgcttttttttataatagctATAGTTTTGAGAATTCAATATATTTGCCTA
TTACCAATCGCAGAGGGCTGAAAGATCTTCAACTTCTTGGCAAAAGGCTT
GTAGTGCGCAAATCCCGCGCAAATTCAAATCCTGCTAAAATTTGATAATT
CCTGcttttaaattccaaaaatctgcttatctttattttttgctttaaaa
cttATATTTTGTCAGTTTTTCCTAGGCtatgtaaaacaaaaaaaaaacaa
ttggagtaaaaagtcaaaatgctgtAATAGTAGAATCCCCAAAAGGAGTA
TCATCGGTGTTTCTACTCAATGAATGATTattgattttataatttttctt
ccGATTTGGCAGAAGATAGCTCAAGACCCGAGGTGTAAACTTGTTGACGA
TCAGGCAATGAAGGATAAATTAATTGACAAGttataaatgaatttatttt
ttgttcgtTCGGCGCTGTTTAGTCACGTGATACGATGTATAAGGGCGGTA
GGATTTTGAGAATATTCACACGTCGATAGATGAGCTTAGACTCCCTCCCA
CCCACCCTTACATATTTCTATTTTACGGTTATTATAACATAGTTGTTGTT
ACTGATTATTTTACGGTTATTGTGTACCGAGTACTACTTTGTACGATTTT
TATAACATAGTCGTTGTTATTAACTATTTACTTACAAATGAGATTTGTAA
CTTATTATGCCGCACTATAGAGGCTTTTCTAGACTTCTACTAAAGTATAA
GTGGATAAGAAGAAGAAGTAAAATAATTAATAAAGTTATTTTCGATTGAG
TTtacgaattagaaaataaatttttttttgagtagCATTATTTAACCGTC
AATAGGGGTTTTCATAACAcaggaattttattttgaaatagtcTGTGATT
TTTTAGTTAATTAACCTATCATAGGTATGAGAAGATGCAATTTTTCAATG
ATTCTGATCTGCAATTTGTGAAGTTAAGATGTAAACAATTCATAACTAGA
AAAATTTCCCCTATTGACGGtaacttttcttttctcttcattTTTGCCTT
TCATTTTTATGGGTAATGCTCTCCTTTCGGTTTTGGGTTTagtattttgt
ttgtttggttCTGTAGAATGACTGTTGTCGTTCTATTGCAGTGCTAGGTG
TTGAAAGtgatgtacaaatttgccatgaagctatgatcttttgacattga
aattgtggatttggcaaagttggtgagtatggcaaattttgtagtcaatc
gaattggctcaAAGTTGATCATGGATCATTCACTCCGTTAATATTTTCNA
CAACGAACGAATTATCAAAGTTGATCATGGATCATTCACTCCGTTAATAT
TTTCCATGAATGGTGGAATGGGTGTAGAGGCTGAGCACTTCTTTGGAGCG
TTAGCTTATCTACTACTAGTAGCGGATAAGACTGCTCATACttctcaaac
aaaaaaattggattCGAACTAAAATTTCGTTTGCACTAACGAGATCAGTC
TTAACATGTATTCGCGGTACACGAACACTAAAACCAAACCTTaggtttga
tgaaattgatttgttaaacaacaatattttgaaaacatcttAGCTTTTCA
TCTCACAGTTCTGGCTTTTAGTTTTTTTCACCGTATTTTCCATTGCTTTT
ACTTATGCTTTTGGGGCTTGCATGACCCGCTAGGTTGTGCGATTTCGACA
GGATTGCGATTCAGGTTTCactatatttatttttatttgtgtcttgattt
caattttttatctaaCATTGAATTCTAAACGAGAAAAAACGTATGTACGG
AGAACGCGTTCGACAATATGAAAATGGAGCGTTCAAATACCAATCGTTTT
CGCGGCTAACGGTGCAATGGGCGTGGAATGCATTCGtttctatcaaaaat
tatcagagTTGTTGGCCAACAAACGAAAAGTTCCTCAGTCAATCGTGACA
AATAAATTGAGAAAACTGATTTGCTTTTCACTTTTCAGTTTCTTGTCGTT
CTGGCCTTTTCTGGTCTTCTTTCTTGTGTGGcccactttttgtttttttc
cccTTAGCTGGCATCTGTTTTGgttccattttcatttttgatataGTGTA
TATAGAACAAAAAACAGTACGAGTGttgtgcgcagatatgtaatttctgc
gctatgtaatttcgagctgcgcagatatgtaattaaatttctgcgcagat
atttaaaacacgatctttaaaatcaatggtacaggggggggtccatgtac
aaaaaagcggcatgtatcatggggtgggtaggtgttttcaaaattttttt
gctgtttagtatacttgtactatacagggggtgtcagggtcaaatttcgg
attttctgcttagtatttgtgtactaaaaagccaaaatcaaatcaaattg
tgatttattttaGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNttttgtacattttgtactataggggtgggtgggtgttta
aaatcgaaatttgctacaaagtactgatacatgccgctgttttgtacatg
gacccccccccctgaatggTACCCAATTGATAGCTTTTACCAttactttt
accttttttactttttattttggtacAGTATTTTATCTAATTCCTATCAA
ATACAATAAGTAATATCttattataagcatcaactATTATAAGAATCAtc
gttataagaaaatgatctataacttttcaaccactaagtttaagctttcg
gtgattggtgctttcaaagtaaacaagggatagcgcctaaaatgaaaata
attatttttcttatatatgcatcatctttataagaaataaatcaataact
cttgatagacggtgatatacctttttgtacttagtttttacaaagtaaac
aaagaacgGCACAAAGtgtgaacatatttatttttcttgtaagcattaac
tttataagaatcaaagcaataactcttgatagagggtaatatatctttcg
gttattagtttttgcaagtaaacaagggataacgcataatatgagcatat
ttatttttcttataagcatcagctttataagaattaaatcaataactctt
gatagacgatatacctttcggtaattagattttacaaagtaaacaagggc
gGCGCATAATACGAGCATATTAATTTTTCCTATAAACAActactttatga
gaatcaaataACTTTTTGCAGAATAgtatatacctttcggtaattaccgT
ATTCATTCGAATACACGCTCCTTCTCTGAGGAAAAAGACTCCCCTCAATG
GGagtttttaaattctttaattaAGACCCCTTTCTTTACACCCCTCGAAT
AAGCACCCCTCCTGAAAGTCTTAAGATTAAAAAGACGCCCAGGACGTTTA
TGTTCGAAGAAATACAATAATTTTTACAAAGTTAACAAGGGagagcatgt
taagaatatgaaaaacctcaaaaaataaTAGtatccaaaatcttttttaa
aatgtGAACCCATCTAGCAAGGTAAGCTCAAGATTCAGATTTTCTATTTA
TCTTATCGGTACAACCtaataaaaaaatacaatataatGAGATCTTCAAT
AGAACTTCGACTCGAGATAGTAGCACCTATgtaaactttattgattttgt
agtCTTGTAGTCATGCCAATGCATGGActaatttatgataaaaaaactcc
cTTTTCCTTTTAATGGTTCGATCTACAAGCAAAGTCAGTATATTTGATTG
AATAATCCAACGAAATAGAGTGGGATACTGATTACAGTGTGATTAGTCAT
CAATGGCAAAATATAGAGTCTTTAAATACCAATTTTAAATGCTATATGTT
AAAAAGGGTATTAAAAAAACGGAAAAGAACGTATTTTTAAAACGGATCAT
GTAAATAAAAGACCAGCATCATTAATTCTGTTGGAATAGATCTAATTAGA
tctctttgttttcaatttttaattcaacTACAAAAAACCTAATCATTTGA
CATTATTGGTGACTCATTTGATAGATTTGATATCAGTACTAAggcctttt
tatgtttatatTCTTAAACTATGGCAGACTTTACAccttaaaataaataa
aaaataaaataactaTAAAATTCCTTAATTAAGCATGATTTTTACAATTC
AAGCTTAAAGGATTTTTCACACCGTTTGCTTACAAAAAATtccttaaaca
aaagaaagaacgaaTCTCACTCTAGTAAGGAAAATAAGCAATGatgttat
aatttgaaatgttaTAGTTTTCTGTACAagaaaaattttacaattttcaa
cttttaaaatgtctAAAGATTCCCCAATTTATACCGatttagcaccaaaa
ataaagctcctcaaataaaaaacatgagctgttgatacttgaaatggaaa
ttttatacctaGTAAGTCGATTTGGTCTAtacttttgttttctaaaactt
tatcagaaaaattacatgataatctttaaacttttgcgccgttggtctta
ctttactctcttcaaaagatcaatggctgaaataGGGCCCAAAATTGGCA
GGCataagggttctttgtaattttcGCGCTGCAGGCAAAAAAAGTCTGCG
TAAGAAAgttcaaacagcttaaaagatcttctaaaaaggagaagGTTATT
CATAATAAGacctagacgatgttatcgtccgttacacagtgatagtaaag
gcgggaaaaaatggcggtatggcattatggcggtatacggaaaaaaatcg
gcgggagagtttcgaagaaactggcaactctaccgactgctaactctttt
cggcaaaaaaacccgtttgcgaattctcttcggctttgggcttttttctt
agatagtgattcgtcttagactataacatagtctaaataagaccacaaaa
accacagcgagcatcatcaagtttcgatctttttggcaatctctcatttt
gggggtgagcatcctctttaacccctggtggataaaACTAACATTGCATT
TTTAGAATGTGCGCTATAAACGTGCCGAAGGGCGCCACATTGCCtaatta
aacatcaacaaattttggcgcccccttgaaaagctcttttggcgcccctc
tcagatctttctgggtggtgcactgcacaccctgtaCCCCCTGCCAGGTC
GCAACTGCTACTTTTGTGTTTAGTTATAATAATTTTTAATGATGACAGAT
AACAAAGAAGGGTAGTGCTAATTTTCGCGCTCAAtcatagatgaaaatga
aaaccacGATGTACCATCAACTGCTTATTCGAAAGAAAATAAGACTTTCT
CTCTCAAAACTGCACAAAATCCCTCTTTCATACTCGAATCaaccaaggac
acttgtatagcgtagctacgctatacaagtgtccttgaaTCAACCCCCTG
ACAAACCATTCGAAATTGCAGCTTTGCTACCATCTTGCGTTACACACATC
TTTTATaaagtctaaaaataaaattgaaaattttcatgatggaaatattc
ttacgatattcttaattttttggctattctcatcattatttttataaagt
attattataaaaaaagcgtgtagtttgCTAAGGGATTTAAAGATAAAACT
CTTAAATTTAAATACACAGTATGTTTCTATTAGTAATTTAATCCATCGTA
ACGTATTAAATCTGTACCCCGTTTAGATAAATTTGATATGACGTTAATGA
GTCAACAAATagttttttgctttctttctctTGTCTGTATATAAATAAAT
TATCTTTTCAGAGAATGGTATCGTATTTCTCTAAATGTGTTTGTTGATGC
AGTTTCGTGTTTATTAGTGATTATGCAGGGTGGATTAGAAATAAATTGCT
ACCGAGTGAACTTTCTACCCAATTCGACAACGTCAGTTGAAAGTACTGGG
GAGGACGATCAGAAAAATATTGATCGCTCTTTTGGCTTTGACGGTGGATT
TTCGTCACGAAAGAGactttacagtatacccctttATATACAGGAGTATA
AGCCATTTAGATTTtcatatttaaattttgaatcACAACGCAAACAAACT
GTTGCTCACATATTGGTTTGCTCAGTCGGTGAAGATTGCAAGTCTCTCAA
TCAAAATCACATCAAGCTTGTTCTAAAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046639-exon-scaffold_116-1491911889:264745..264855 | TCONS_00046639-exon-scaffold_116-1491911889:264745..264855 | Clytia hemisphaerica | exon |
| TCONS_00046639-exon-scaffold_116-1510915933:264745..264855 | TCONS_00046639-exon-scaffold_116-1510915933:264745..264855 | Clytia hemisphaerica | exon |
| TCONS_00046639-exon-scaffold_116-1575043694:264745..264855 | TCONS_00046639-exon-scaffold_116-1575043694:264745..264855 | Clytia hemisphaerica | exon |
| TCONS_00046639-exon-scaffold_116-1491911889:274254..274324 | TCONS_00046639-exon-scaffold_116-1491911889:274254..274324 | Clytia hemisphaerica | exon |
| TCONS_00046639-exon-scaffold_116-1510915933:274254..274324 | TCONS_00046639-exon-scaffold_116-1510915933:274254..274324 | Clytia hemisphaerica | exon |
| TCONS_00046639-exon-scaffold_116-1575043694:274254..274324 | TCONS_00046639-exon-scaffold_116-1575043694:274254..274324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_116 | supercontig | scaffold_116:264745..274324 + |
Blast
The following BLAST results are available for this feature:
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