|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046629 ID=TCONS_00046629|Name=TCONS_00046629|organism=Clytia hemisphaerica|type=transcript|length=4877bpRun BLAST on NCBI transcript from alignment at scaffold_116:22769..50690+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00046629 ID=TCONS_00046629|Name=TCONS_00046629|organism=Clytia hemisphaerica|type=transcript|length=27922bp|location=Sequence derived from alignment at scaffold_116:22769..50690+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00046629 vs. Swiss-Prot (Human)
Match: CHD2 (Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2) HSP 1 Score: 1191.79 bits (3082), Expect = 0.000e+0 Identity = 635/1120 (56.70%), Postives = 809/1120 (72.23%), Query Frame = 2
Query: 38 KRNAASTVSYKENSDEQTDSDDLIEQDENATQQAQLPEEDVETIEKVVRHRKGWPGQTGAQTTIYADDAEEIAKLGDPDPSKDETELHYLIKWKNWSHLHSTWETKDGLIAQRVKGLKKLDNYIKRMEEIDRWKRHSTPEDVEYFEMQQEMNEDIQKQFQKVERIIAHK----------FTADS----SSGYPDYLCKWHGLPYFECTWEDGALTAKYFQKFIDDYLERERSDTIPNRNAKCLRQRPKFASFKTQPDFIGSEELRLRDYQVDGVNWLVHAWCRDTSVILADEMGLGKTIQTISFLNYLFHKYSLYGPFLVVVPLSTMDAWQREFVKWGPAMNIIVYLGDVNSRTTIQEYEWCFKKNRKLKFNVLLTTYEMLLRDKELLGSLNWAALMIDEAHRLKNEDSLLYRMLINFKTNFRTLITGTPLQNSLKELWSLLHFLMPNKFDDWSEFESQYSVSDKEGLQKLHRDLEPFLLRRVKKDVEKSLPAKVEQILRVEMSQVQKQYYKMILTRNVQELCRELKGAFSGLLNIVVELKKCCNHASLIKPMDQETIDPN--ILQTLIIGSGKMILLDKLLCRLKETGHRVLIFSQMVRMLDIIADYLVMKRFPYQRLDGSIRGELRKRALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMARAHRIGQKNQVNIYRFVTKNTIEENIIERAKKKMVLDHLIIQRMDTTGRRILSKSNAPS-SNPFNKEELSSILKFGAEDLFKEHDQDHDQKLHAMDIDDILQRAEMQETQEDNSVNEDLLSQFKVVNYAAFNEEEIKAAPASSATPIEKLWEEIIPAXXXXXXXXXXXXXXXXX----PRSRKAVEKMGTTLSNETSSSKRVKSKXXXXXXXXXXXXXXXAKETTAGAKKASRKQKP--LKKEGVKGFTDAEIRRFIKSYKKFARPVTRLDAISEDAELTDXXXXXXXXXXXXXXXXCEQTVKEYEEKLLQDE---QFDGKKKGASLKISGVTVNAHSVMKAERDLEPLATCLPEDEKQLKGFRLTIPTRSVHWGLPWGNIEDSMLLVGMLMYGIGNWDTIKNDQTLKLTNKILPT-GKGKPQEKQLMSRGEYLLRLLR 3316
+R AA VSYKE+ D +TDSDDLIE + Q ++ ETIEKV+ R G G TGA TT+YA +A GD D KDE E+ YLIKWK WS++HSTWE+++ L Q+VKGLKKL+N+ K+ +EI +W +PEDVEYF QQE+ ++ KQ+Q VER+IA K F A S S P+YLCKW GLPY EC+WED AL K FQ ID + R S TIP R K L+QRP+F + K QP ++G E L LRDYQ++G+NWL H+WC++ SVILADEMGLGKTIQTISFL+YLFH++ LYGPFL+VVPLST+ +WQREF W P +N++VY+GD+ SR TI+EYEW + ++LKFN L+TTYE+LL+DK +LGS+NWA L +DEAHRLKN+DSLLY+ LI+FK+N R LITGTPLQNSLKELWSLLHF+MP KF+ W +FE + + G Q LH+ LEPFLLRRVKKDVEKSLPAKVEQILRVEMS +QKQYYK ILTRN + L + +G+ SG LNIV+ELKKCCNH LIKP ++ + IL +LI SGK+ILLDKLL RL+E G+RVLIFSQMVRMLDI+A+YL +K +P+QRLDGSI+GE+RK+ALDHFNA+GS+DFCFLLSTRAGGLGINLA+ADTV+IFDSDWNPQNDLQA ARAHRIGQK QVNIYR VTK T+EE IIERAKKKMVLDHL+IQRMDTTGR IL ++ S SNPFNKEEL++ILKFGAEDLFKE + + + MDID+IL+ AE +E + S ++LLSQFKV N+A ++ P K W+EIIP E+R KVEEE+ ++ + PR R + +K T S+ + SKR + + + E + KK R+ +P ++K+ V+GFTDAEIRRFIK+YKKF P+ RL+ I+ DAEL DKS ++LK L EL+ +SC ++EYEE+L ++ + GK++G ++KISGV VN S+++ E + E L +P D ++ K + LT ++ H+ + WG +DS LL+G+ +G GNW+ IK D LKLT+KILP KPQ KQL +R +YLL+LLR
Sbjct: 223 RRRAAKNVSYKEDDDFETDSDDLIEMTGEGVDEQQ---DNSETIEKVLDSRLGKKGATGASTTVYAIEANGDPS-GDFDTEKDEGEIQYLIKWKGWSYIHSTWESEESLQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQELASELNKQYQIVERVIAVKTSKSTLGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKFQNCIDSFHSRNNSKTIPTRECKALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFKELEGEESEP-QEMDIDEILRLAETRENEVSTSATDELLSQFKVANFAT-----MEDEEELEERP-HKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSDSDTESKRQAQRSSASESET---------EDSDDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIKAYKKFGLPLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQEYEEQLKENASEGKGPGKRRGPTIKISGVQVNVKSIIQHEEEFEMLHKSIPVDPEEKKKYCLTCRVKAAHFDVEWGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQGKQLQTRADYLLKLLR 1322 HSP 2 Score: 94.7449 bits (234), Expect = 3.736e-19 Identity = 62/128 (48.44%), Postives = 78/128 (60.94%), Query Frame = 2
Query: 3557 GGSEENEITVKEIGELDDATFKSCKEKMRAEKKSLQQLHQPDQESSEQAQLQATKKCLLKIGDHIEKTLTTEFQHDQPLAENWRSKLWTFVSKFTELGASKLFKLYRTACRKRDSHKKEIQKMKANHT 3940
GSE I E +LD TF CKE+MR KK+L+QL +PD+ + Q QL+ T+ CLLKIGD I + L DQ + WR LW FVSKFTE A KL KLY+ A +KR S ++E QK K + T
Sbjct: 1449 AGSEPVPIGEDEDDDLDQETFSICKERMRPVKKALKQLDKPDKGLNVQEQLEHTRNCLLKIGDRIAECLKA--YSDQEHIKLWRRNLWIFVSKFTEFDARKLHKLYKMAHKKR-SQEEEEQKKKDDVT 1573 The following BLAST results are available for this feature:
BLAST of TCONS_00046629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.