TCONS_00046625 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046625
Unique NameTCONS_00046625
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046625 ID=TCONS_00046625|Name=TCONS_00046625|organism=Clytia hemisphaerica|type=transcript|length=3257bp
TATGTCATGTATATATCTTTCTCTTGTTCTTTAGATTAACATTCATAGTT
ACTATAAATAAACATATGAATAAGACATTCTTCATTCGCGAGtttccatt
gttttttttggaatctaaaagatgtatcacgaaatgaaacgtttttcaac
ctcagccgcgcgactattaCACAAAATTTGTGAATTGAGATCGGTTTAAA
AGAATACAACCAATCAAATAATTgcaataaaattgaaatcaaatatAACC
CAGGATTTGCCGCTCGATTGTAATAGATTATGTTCACTCCAGTCAGTCAg
tacctttagccaaattaggaacatttttcttacttttaccaATATATATT
CCTAATTAGAAATcctattcctaattaggaagaaaaaaattcaaacttgt
ttgattgacactGTCAGGTTAATGCtgttcagaaaatttgaatacTTCTA
AATTCTACAATTCTAGTGGATTCTACGCACAAACCAGAGCAAGTTCGGCT
GTCCTCGTTCTTTTGCTAAAGAAATTTAACATATATGTACAAATGCAGGA
AATTTTATCGATTAGCTTTGCACATGCAGGTAGTTATTCACGTTGGGTGT
TATTTTGAGGGCGTAACACCCACATTCTAGCAGTTGCTTAgaattcaaat
ctttttttggaaaaatgatgCTTTGAAAAACAAACGCTCATCAAAATCAA
CATGATGTTAAAAGATTGCACGAAGACATTTTGAACTTCAAAAAACTTGG
CTGCTAAGTGGAGGAGAGTGGGGAGTCTAACCCTTAACAGCCAAATGTTG
TTAAGAAAATTTGCAAGTCAAATGCCATTGGCCCCTAACTTTGAACTTGA
GTAGTTTCATTATTGGATCAGAAAACAAACCTGAGGCCAAATCTAAAATC
TGGCTAATTACAGCAATAATAATTTGCATAACTAATTACTACAGCTCAAA
TTAAGATATATCCATCATACTTCAGTGAATGCAAGTCCAATGCCTCGttc
gttcgcaatggacttgtgtcgcaagggctcagtggaATCGTCAGTTGCTG
TGCGGCCATTCAATCGGTACCACATCGTTGTTCCGCTGTTTTGACAAAGT
GCcaggattctcaaagtagcgcaagtacatgaCAGAACGAAAGGGAGCTA
TCGAGCCAATGCTCACgaatgatcgaatacatttaacaatttatcaaata
attgGTAATAGCTAGGTGGGGAATTAAAATTTTGGTGTGTGATTTTCGAT
TTGACCTTTTGATAAGCTGGGTGTGAAGTTCAAACTTAGGCGtgtgattt
ttattttcactattcTCAGCACAATTTCGAGAGCAACCACCTCTTGCATG
TTAATTTAGTTTTAAACCGCTGGAATTTGTTTTTTCAACGTGGGATTTTA
TAGAGTGGTATTTGGCACTTCCCACCAGAGTAAAACATTTCAGGGTCCTA
CGCGTACAACTACGGGAAACATGTACTTTCCCACCCTTTTAATTTGACTT
CCCCACCCGTGGGAACTAATGACTTTTTCCTGTGTAACATTGGCCATCAG
TTTCTTTAGGAGGAAGTTGTGGACAATGGCATAAAAAAGTGAATCGTCAa
cactgctctaacttgggacaataattggtcgaaacatgggactggttgat
atctggcctgtattttcacttgctcttaaatctctttgacaacaaatttg
ttttgataactccaacaagtttatcaatcatacttattcgttcctcttag
agtgcacagacacttgcgtgtgttccactacagatttttttcatatttca
atttaaaagcctactcggtgcaaaagaaaaattgtgtatttttcaatacg
ccgttcattaaatCAAATCGAATGACTTTGGAAGTTCGGTTAAATTGTAG
CTGAATTGCCGTCctatgttttgtcagatagtcccaaatTAGAGCAGGTG
ACGGTATCCCTGATCATCTTTGTcaatttttcgtgttttttttatcacca
tctttcagtagtattctttgtattttgattattgtgttgtttttttttca
ttttataggGCTCCTTTCAGTGGGATTCTGGAAATTCTGATATGTGGGGC
TCAATCCTTGATGATCTACCAGCTGAATTATCAGACGATTCTGAAGGTGG
CAATTTCGTCAATGAACCTTTAGATTGGAAGCATGAAACAACGGATTTAA
TTACAGATGCATCAGTGATTCAAAATGATGTTTCAATGCTGGAAAAGACT
GCTGCAGAAGTAAAGGATGAAGTTGAAGAAGATGATTACTTGAGGATAAA
AAACGAGCCCATGGTTTCCATGGCTATGCTTCTCAACAATACAATAACAT
CTACACAAACTGCTAAGACTCAAACCAAAAATGTTATAACTgtgaaaaat
acacaaaataAATTGGCAATATCGAATCCTCTTATCTTGAAACCAGTATC
ACTAGTTAACGGCTCAAACAACACATCAAACATTCAAACTCACATCAAAA
TTGGAAACAATGTTTTTGCTATCATCCAAAAAGCTAACCCAGCTCCAAAA
ACAACACTTTCAGTCACAACCAAACCTCAGACTTTGACACAAACCTCAAA
CAACACAAAAGTGGAAACCAATACCCTGAAAATCTGTCAACCAGGAGTTG
AAGCTGGCAAAACATCTTCCTTTCTTGATCACGACTATACAGAAGAGGAG
GATTTTATGGAGACGACTGGTGTCAGTAAGGGATTTGGACCAGGTCTTGT
TTTAACTGATGAAGAAAAGAAATTGTTGGATTTCGAAAACATTATCATTC
CTGAAGATGCTCCCCTgacgaaagaagaagaaaaatcctTGAAAAGAGTT
CGGCGTAAAATCAAGAATAAGCAATCAGCAATGGAAAGCCGTAGAAGACG
TAAAGAATATATTGAGAATCTTGAACAAAGAGTGAAACACTGCACAGGCG
TCAACCATGGCCTCAAGAAAAAGGTGGATAAACTTTCTGAAGACAATAAA
TCTCTTCTTTTGCAATTGAAACAACTCCAAGCTGTAGTTGCAGCATCAGT
CAGTTCAAatagaaaagctcaaaaaggAACTTGTCTTGCTGTTCTGTTAC
TCTCCTTCGCACTTTTCTACTTACCATTCAACCCTGTTCAATTCAACTCT
GGATCGAAAAACACAGTCTCAACAGAAGCCCCATCACATGCTTTTCGATC
AAGGACATTATTATCGATGCCTGAAGATCATGATTTTATCGATTCGGATC
GAAACGA
Run BLAST on NCBI

transcript from alignment at scaffold_116:3057..8092+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046625 ID=TCONS_00046625|Name=TCONS_00046625|organism=Clytia hemisphaerica|type=transcript|length=5036bp|location=Sequence derived from alignment at scaffold_116:3057..8092+ (Clytia hemisphaerica)
TATGTCATGTATATATCTTTCTCTTGTTCTTTAGATTAACATTCATAGTT
ACTATAAATAAACATATGAATAAGACATTCTTCATTCGCGAGtttccatt
gttttttttggaatctaaaagatgtatcacgaaatgaaacgtttttcaac
ctcagccgcgcgactattaCACAAAATTTGTGAATTGAGATCGGTTTAAA
AGAATACAACCAATCAAATAATTgcaataaaattgaaatcaaatatAACC
CAGGATTTGCCGCTCGATTGTAATAGATTATGTTCACTCCAGTCAGTCAg
tacctttagccaaattaggaacatttttcttacttttaccaATATATATT
CCTAATTAGAAATcctattcctaattaggaagaaaaaaattcaaacttgt
ttgattgacactGTCAGGTTAATGCtgttcagaaaatttgaatacTTCTA
AATTCTACAATTCTAGTGGATTCTACGCACAAACCAGAGCAAGTTCGGCT
GTCCTCGTTCTTTTGCTAAAGAAATTTAACATATATGTACAAATGCAGGA
AATTTTATCGATTAGCTTTGCACATGCAGGTAGTTATTCACGTTGGGTGT
TATTTTGAGGGCGTAACACCCACATTCTAGCAGTTGCTTAgaattcaaat
ctttttttggaaaaatgatgCTTTGAAAAACAAACGCTCATCAAAATCAA
CATGATGTTAAAAGATTGCACGAAGACATTTTGAACTTCAAAAAACTTGG
CTGCTAAGTGGAGGAGAGTGGGGAGTCTAACCCTTAACAGCCAAATGTTG
TTAAGAAAATTTGCAAGTCAAATGCCATTGGCCCCTAACTTTGAACTTGA
GTAGTTTCATTATTGGATCAGAAAACAAACCTGAGGCCAAATCTAAAATC
TGGCTAATTACAGCAATAATAATTTGCATAACTAATTACTACAGCTCAAA
TTAAGATATATCCATCATACTTCAGTGAATGCAAGTCCAATGCCTCGttc
gttcgcaatggacttgtgtcgcaagggctcagtggaATCGTCAGTTGCTG
TGCGGCCATTCAATCGGTACCACATCGTTGTTCCGCTGTTTTGACAAAGT
GCcaggattctcaaagtagcgcaagtacatgaCAGAACGAAAGGGAGCTA
TCGAGCCAATGCTCACgaatgatcgaatacatttaacaatttatcaaata
attgGTAATAGCTAGGTGGGGAATTAAAATTTTGGTGTGTGATTTTCGAT
TTGACCTTTTGATAAGCTGGGTGTGAAGTTCAAACTTAGGCGtgtgattt
ttattttcactattcTCAGCACAATTTCGAGAGCAACCACCTCTTGCATG
TTAATTTAGTTTTAAACCGCTGGAATTTGTTTTTTCAACGTGGGATTTTA
TAGAGTGGTATTTGGCACTTCCCACCAGAGTAAAACATTTCAGGGTCCTA
CGCGTACAACTACGGGAAACATGTACTTTCCCACCCTTTTAATTTGACTT
CCCCACCCGTGGGAACTAATGACTTTTTCCTGTGTAACATTGGCCATCAG
TTTCTTTAGGAGGAAGTTGTGGACAATGGCATAAAAAAGTGAATCGTCAa
cactgctctaacttgggacaataattggtcgaaacatgggactggttgat
atctggcctgtattttcacttgctcttaaatctctttgacaacaaatttg
ttttgataactccaacaagtttatcaatcatacttattcgttcctcttag
agtgcacagacacttgcgtgtgttccactacagatttttttcatatttca
atttaaaagcctactcggtgcaaaagaaaaattgtgtatttttcaatacg
ccgttcattaaatCAAATCGAATGACTTTGGAAGTTCGGTTAAATTGTAG
CTGAATTGCCGTCctatgttttgtcagatagtcccaaatTAGAGCAGGTG
ACGGTATCCCTGATCATCTTTGTcaatttttcgtgttttttttatcacca
tctttcagtagtattctttgtattttgattattgtgttgtttttttttca
ttttataggGCTCCTTTCAGTGGGATTCTGGAAATTCTGATATGTGGGGC
TCAATCCTTGATGATCTACCAGCTGAATTATCAGACGATTCTGAAGGTGG
CAATTTCGTCAATGAACCTTTAGATTGGAAGCATGAAACAACGGATTTAA
TTACAGATGCATCAGTGATTCAAAATGATGTTTCAATGCTGGAAAAGACT
GCTGCAGAAGTAAAGGATGAAGGTATGTCCAAAGAAAAATCCCCAGGGGG
TATTAGGGTTGCAAGCTGATGGGTATGTACCAACCGACTTTAGACTTTCA
GACCCTTAGCAGGACTAAAAAGcaggaaaatttttgtgaatttgagaacc
cttattgggactaatctGACCAAGATCTGACTAGGAACTTATCTGACCTG
ATCATCTTTTTAGGGGtacaaagttgaaattttcctattttcccaaccct
tagtgagactgaaattcgattttctgatttttctaacCATTggtgggact
ttggaagtcccaaaaaggtacccttaagagCGGCACATACCCCTGCTCCA
TCTGCCTAAGTacccaaaaaaatacaaatattataCACAATcctattttg
acaattttgtgTTTTCTTTCTTTACCAAAGATTATATGAAATTGATTAAC
TAAGGCTAGTGAATTGCTTTTGAAAATCTGCCTGTAGGCTAAGTTAGGTC
TCAATTGTCGTTAATCCAGGTTAATCACAATATTGTGTTTCATATTCAGT
TGAAGAAGATGATTACTTGAGGATAAAAAACGAGCCCATGGTTTCCATGG
CTATGCTTCTCAACAATACAATAACATCTACACAAACTGCTAAGACTCAA
ACCAAAAATGTTATAACTgtgaaaaatacacaaaataAATTGGCAATATC
GAATCCTCTTATCTTGAAACCAGTATCACTAGTTAACGGCTCAAACAACA
CATCAAACATTCAAACTCACATCAAAATTGGAAACAATGTTTTTGCTATC
ATCCAAAAAGCTAACCCAGCTCCAAAAACAACACTTTCAGTCACAACCAA
ACCTCAGACTTTGACACAAACCTCAAACAACACAAAAGTGGAAACCAATA
CCCTGAAAATCTGTCAACCAGGAGTTGAAGCTGGCAAAACATCTTCCTTT
CTTGATCACGACTATACAGAAGAGGAGGATTTTATGGAGACGACTGGTGT
CAGTAAGGTATGTTCATTTCAAGGTGGATTGTCTATCTTATTTGATGGAC
ACAGTAGCACCCATTAGAACGAGATTTAAAATATTAGTTTGTACACAAAA
AATGACTTATTTCATATGTACCTTACAACAATTTCCACGACTTTTAGAAA
GACAATAACTAATAGAAAGCAGACATTTAAAATTAGCTTTTTTGCTCATT
CCCAGTGAACGAAAAACTTTCCTTATTGATAACACATTGTTTTGTCTCAT
AGGGATTTGGACCAGGTCTTGTTTTAACTGATGAAGAAAAGAAATTGTTG
GATTTCGAAAACATTATCATTCCTGAAGATGCTCCCCTgacgaaagaaga
agaaaaatcctTGAAAAGAGTTCGGCGTAAAATCAAGAATAAGGTATTAg
gattaaaattttcacaaaaaaggtGCTGGTTCTTTATAAAACCTTGaatt
atattcgaattataTCTATTCGAAACCTATTATTCTATATCAAAATCACA
TCAACTAAGTTTGTGTCTTATTAAAATTGCGTCTTTTGTTTTAGCAATCA
GCAATGGAAAGCCGTAGAAGACGTAAAGAATATATTGAGAATCTTGAACA
AAGGTatttgaatttataaaaatgatattattgttataACTTTTGTATTC
AAAGTAACAAACAAGCTGTGGCGATGCCAACTTTTTattagaataatttt
taaattgCTCGTTTATTTTTGGCTGTGAATTTAGCctcaaattctaaaaa
taactAAGAAAATCTTCACAAAATAATGACTGGTTCTCAAAAAAGAACGC
CATACTgagttttaaattttctaattaaCTGACCTTTATTTATATCATTT
TTTCAGAGTGAAACACTGCACAGGCGTCAACCATGGCCTCAAGAAAAAGG
TGGATAAACTTTCTGAAGACAATAAATCTCTTCTTTTGCAATTGAAACAA
CTCCAAGCTGTAGTTGCAGCATCAGTCAGTTCAAatagaaaagctcaaaa
aggAACTTGTCTTGCTGTAAGTTTAATCTTTGTAATTTcacttattttta
aaactttgatgggaattttaaatttaatataATACATATATAATTTTATA
TtaagattattttaaaaaccttgtgACTTAATTTTCCACCATGATACCAT
TTAGCCTATATGGCAATAAATTTATATTTGGTATAGTTTATTCCAAACGT
TTTTCAAACTAGCATTAATTTCATCTCTTTTTTTCAGGTTCTGTTACTCT
CCTTCGCACTTTTCTACTTACCATTCAACCCTGTTCAATTCAACTCTGGA
TCGAAAAACACAGTCTCAACAGAAGCCCCATCACATGCTTGTAAGTACAC
AAGATATTATATTGATTTTACTTGAATATATATATCGTCAAGTGAACACG
TGAGCACAATCTGAGAGCTTTGTGACACCATCTCAAGATATTCAAGGTGT
TCTCATTCGTGTACTCATTCGTGTTTGTTCAAGGCGTAGTTTATCAAGTC
GATGACCTTATGCCAATATCTCGGTGACAATAGTTGaaggatttttttca
tttgaaatgtaaacaaactgccttaaaagtttgtcaattttggcggggat
taaatttgtaGTTGTACGCGCCAAGATTGATACACTTATTAAGGTAGGCT
TAAACTCGAGCTTTCCAATTATCTTGTATCTTGTATCCTTTACTCATTTT
CTCATTATTGTTTATTCTTTAGTTCGATCAAGGACATTATTATCGATGCC
TGAAGATCATGATTTTATCGATTCGGATCGAAACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029767XLOC_029767Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046625-exon-scaffold_116-1491911889:3057..5328TCONS_00046625-exon-scaffold_116-1491911889:3057..5328Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1510915933:3057..5328TCONS_00046625-exon-scaffold_116-1510915933:3057..5328Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1575043694:3057..5328TCONS_00046625-exon-scaffold_116-1575043694:3057..5328Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1491911889:5856..6313TCONS_00046625-exon-scaffold_116-1491911889:5856..6313Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1510915933:5856..6313TCONS_00046625-exon-scaffold_116-1510915933:5856..6313Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1575043694:5856..6313TCONS_00046625-exon-scaffold_116-1575043694:5856..6313Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1491911889:6559..6699TCONS_00046625-exon-scaffold_116-1491911889:6559..6699Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1510915933:6559..6699TCONS_00046625-exon-scaffold_116-1510915933:6559..6699Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1575043694:6559..6699TCONS_00046625-exon-scaffold_116-1575043694:6559..6699Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1491911889:6851..6909TCONS_00046625-exon-scaffold_116-1491911889:6851..6909Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1510915933:6851..6909TCONS_00046625-exon-scaffold_116-1510915933:6851..6909Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1575043694:6851..6909TCONS_00046625-exon-scaffold_116-1575043694:6851..6909Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1491911889:7163..7322TCONS_00046625-exon-scaffold_116-1491911889:7163..7322Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1510915933:7163..7322TCONS_00046625-exon-scaffold_116-1510915933:7163..7322Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1575043694:7163..7322TCONS_00046625-exon-scaffold_116-1575043694:7163..7322Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1491911889:7544..7646TCONS_00046625-exon-scaffold_116-1491911889:7544..7646Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1510915933:7544..7646TCONS_00046625-exon-scaffold_116-1510915933:7544..7646Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1575043694:7544..7646TCONS_00046625-exon-scaffold_116-1575043694:7544..7646Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1491911889:8029..8092TCONS_00046625-exon-scaffold_116-1491911889:8029..8092Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1510915933:8029..8092TCONS_00046625-exon-scaffold_116-1510915933:8029..8092Clytia hemisphaericaexon
TCONS_00046625-exon-scaffold_116-1575043694:8029..8092TCONS_00046625-exon-scaffold_116-1575043694:8029..8092Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_116supercontigscaffold_116:3057..8092 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.11575	1.21911e-07	1.2102e-09	0.00058809	0.20006	3.41778e-06	0.18037	0.114477	0.0833363	0.00874061	0.0506253	0.00456314	0.0635949	0	0.0203781	0	0	0	0	0.62389	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00046625 vs. Swiss-Prot (Human)
Match: CR3L3 (Cyclic AMP-responsive element-binding protein 3-like protein 3 OS=Homo sapiens GN=CREB3L3 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 9.638e-28
Identity = 75/156 (48.08%), Postives = 98/156 (62.82%), Query Frame = 1 
Query: 2746 LVLTDEEKKLLDFENIIIPEDAPLTKEEEKSLKRVRRKIKNKQSAMESRRRRKEYIENLEQRVKHCTGVNHGLKKKVDKLSEDNXXXXXXXXXXXXXXXXXXXXNRKAQKGTCLAVLLLSFALFYLP-FNPVQFNSGSKNTVSTEAPSHAFRSRTL 3210
            LVLT++EKKLL  E I +P   PLTK EE+ LK++RRKI+NKQSA ESR+++KEYI+ LE R+  CT  N  L++KV  L + N  L L  +  +       S+++ AQ GTC+AVLLLSFAL  LP  +P  F      +    AP   F SRTL
Sbjct:  213 LVLTEDEKKLLAKEGITLPTQLPLTKYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQN--LSLLEQLKKLQAIVVQSTSKSAQTGTCVAVLLLSFALIILPSISP--FGPNKTESPGDFAPVRVF-SRTL 363
The following BLAST results are available for this feature:
BLAST of TCONS_00046625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CR3L39.638e-2848.08Cyclic AMP-responsive element-binding protein 3-li... [more]
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