TCONS_00046623 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046623
Unique Name	TCONS_00046623
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2421

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_116:3050..8092+

transcript sequence

>TCONS_00046623 ID=TCONS_00046623|Name=TCONS_00046623|organism=Clytia hemisphaerica|type=transcript|length=2421bp
AGGATTTTATGTCATGTATATATCTTTCTCTTGTTCTTTAGATTAACATT
CATAGTTACTATAAATAAACATATGAATAAGACATTCTTCATTCGCGAGt
ttccattgttttttttggaatctaaaagatgtatcacgaaatgaaacgtt
tttcaacctcagccgcgcgactattaCACAAAATTTGTGAATTGAGATCG
GTTTAAAAGAATACAACCAATCAAATAATTgcaataaaattgaaatcaaa
tatAACCCAGGATTTGCCGCTCGATTGTAATAGATTATGTTCACTCCAGT
CAGTCAgtacctttagccaaattaggaacatttttcttacttttaccaAT
ATATATTCCTAATTAGAAATcctattcctaattaggaagaaaaaaattca
aacttgtttgattgacactGTCAGGTTAATGCtgttcagaaaatttgaat
acTTCTAAATTCTACAATTCTAGTGGATTCTACGCACAAACCAGAGCAAG
TTCGGCTGTCCTCGTTCTTTTGCTAAAGAAATTTAACATATATGTACAAA
TGCAGGAAATTTTATCGATTAGCTTTGCACATGCAGGTAGTTATTCACGT
TGGGTGTTATTTTGAGGGCGTAACACCCACATTCTAGCAGTTGCTTAgaa
ttcaaatctttttttggaaaaatgatgCTTTGAAAAACAAACGCTCATCA
AAATCAACATGATGTTAAAAGATTGCACGAAGACATTTTGAACTTCAAAA
AACTTGGCTGCTAAGTGGAGGAGAGTGGGGAGTCTAACCCTTAACAGCCA
AATGTTGTTAAGAAAATTTGCAAGTCAAATGCCATTGGCCCCTAACTTTG
AACTTGAGTAGTTTCATTATTGGATCAGAAAACAAACCTGAGGCCAAATC
TAAAATCTGGCTAATTACAGCAATAATAATTTGCATAACTAATTACTACA
GCTCAAATTAAGATATATCCATCATACTTCAGTGAATGCAAGTCCAATGC
CTCGttcgttcgcaatggacttgtgtcgcaagggctcagtggaATCGTCA
GTTGCTGTGCGGCCATTCAATCGGTACCACATCGTTGTTCCGCTGTTTTG
ACAAAGTGCcaggattctcaaagtagcgcaagtacatgaCAGAACGAAAG
GGAGCTATCGAGCCAATGCTCACgaatgatcgaatacatttaacaattta
tcaaataattgGTAATAGCTAGgGCTCCTTTCAGTGGGATTCTGGAAATT
CTGATATGTGGGGCTCAATCCTTGATGATCTACCAGCTGAATTATCAGAC
GATTCTGAAGGTGGCAATTTCGTCAATGAACCTTTAGATTGGAAGCATGA
AACAACGGATTTAATTACAGATGCATCAGTGATTCAAAATGATGTTTCAA
TGCTGGAAAAGACTGCTGCAGAAGTAAAGGATGAAGTTGAAGAAGATGAT
TACTTGAGGATAAAAAACGAGCCCATGGTTTCCATGGCTATGCTTCTCAA
CAATACAATAACATCTACACAAACTGCTAAGACTCAAACCAAAAATGTTA
TAACTgtgaaaaatacacaaaataAATTGGCAATATCGAATCCTCTTATC
TTGAAACCAGTATCACTAGTTAACGGCTCAAACAACACATCAAACATTCA
AACTCACATCAAAATTGGAAACAATGTTTTTGCTATCATCCAAAAAGCTA
ACCCAGCTCCAAAAACAACACTTTCAGTCACAACCAAACCTCAGACTTTG
ACACAAACCTCAAACAACACAAAAGTGGAAACCAATACCCTGAAAATCTG
TCAACCAGGAGTTGAAGCTGGCAAAACATCTTCCTTTCTTGATCACGACT
ATACAGAAGAGGAGGATTTTATGGAGACGACTGGTGTCAGTAAGGGATTT
GGACCAGGTCTTGTTTTAACTGATGAAGAAAAGAAATTGTTGGATTTCGA
AAACATTATCATTCCTGAAGATGCTCCCCTgacgaaagaagaagaaaaat
cctTGAAAAGAGTTCGGCGTAAAATCAAGAATAAGCAATCAGCAATGGAA
AGCCGTAGAAGACGTAAAGAATATATTGAGAATCTTGAACAAAGAGTGAA
ACACTGCACAGGCGTCAACCATGGCCTCAAGAAAAAGGTGGATAAACTTT
CTGAAGACAATAAATCTCTTCTTTTGCAATTGAAACAACTCCAAGCTGTA
GTTGCAGCATCAGTCAGTTCAAatagaaaagctcaaaaaggAACTTGTCT
TGCTGTTCTGTTACTCTCCTTCGCACTTTTCTACTTACCATTCAACCCTG
TTCAATTCAACTCTGGATCGAAAAACACAGTCTCAACAGAAGCCCCATCA
CATGCTTTTCGATCAAGGACATTATTATCGATGCCTGAAGATCATGATTT
TATCGATTCGGATCGAAACGA

Run BLAST on NCBI

transcript from alignment at scaffold_116:3050..8092+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046623 ID=TCONS_00046623|Name=TCONS_00046623|organism=Clytia hemisphaerica|type=transcript|length=5043bp|location=Sequence derived from alignment at scaffold_116:3050..8092+ (Clytia hemisphaerica)
AGGATTTTATGTCATGTATATATCTTTCTCTTGTTCTTTAGATTAACATT
CATAGTTACTATAAATAAACATATGAATAAGACATTCTTCATTCGCGAGt
ttccattgttttttttggaatctaaaagatgtatcacgaaatgaaacgtt
tttcaacctcagccgcgcgactattaCACAAAATTTGTGAATTGAGATCG
GTTTAAAAGAATACAACCAATCAAATAATTgcaataaaattgaaatcaaa
tatAACCCAGGATTTGCCGCTCGATTGTAATAGATTATGTTCACTCCAGT
CAGTCAgtacctttagccaaattaggaacatttttcttacttttaccaAT
ATATATTCCTAATTAGAAATcctattcctaattaggaagaaaaaaattca
aacttgtttgattgacactGTCAGGTTAATGCtgttcagaaaatttgaat
acTTCTAAATTCTACAATTCTAGTGGATTCTACGCACAAACCAGAGCAAG
TTCGGCTGTCCTCGTTCTTTTGCTAAAGAAATTTAACATATATGTACAAA
TGCAGGAAATTTTATCGATTAGCTTTGCACATGCAGGTAGTTATTCACGT
TGGGTGTTATTTTGAGGGCGTAACACCCACATTCTAGCAGTTGCTTAgaa
ttcaaatctttttttggaaaaatgatgCTTTGAAAAACAAACGCTCATCA
AAATCAACATGATGTTAAAAGATTGCACGAAGACATTTTGAACTTCAAAA
AACTTGGCTGCTAAGTGGAGGAGAGTGGGGAGTCTAACCCTTAACAGCCA
AATGTTGTTAAGAAAATTTGCAAGTCAAATGCCATTGGCCCCTAACTTTG
AACTTGAGTAGTTTCATTATTGGATCAGAAAACAAACCTGAGGCCAAATC
TAAAATCTGGCTAATTACAGCAATAATAATTTGCATAACTAATTACTACA
GCTCAAATTAAGATATATCCATCATACTTCAGTGAATGCAAGTCCAATGC
CTCGttcgttcgcaatggacttgtgtcgcaagggctcagtggaATCGTCA
GTTGCTGTGCGGCCATTCAATCGGTACCACATCGTTGTTCCGCTGTTTTG
ACAAAGTGCcaggattctcaaagtagcgcaagtacatgaCAGAACGAAAG
GGAGCTATCGAGCCAATGCTCACgaatgatcgaatacatttaacaattta
tcaaataattgGTAATAGCTAGGTGGGGAATTAAAATTTTGGTGTGTGAT
TTTCGATTTGACCTTTTGATAAGCTGGGTGTGAAGTTCAAACTTAGGCGt
gtgatttttattttcactattcTCAGCACAATTTCGAGAGCAACCACCTC
TTGCATGTTAATTTAGTTTTAAACCGCTGGAATTTGTTTTTTCAACGTGG
GATTTTATAGAGTGGTATTTGGCACTTCCCACCAGAGTAAAACATTTCAG
GGTCCTACGCGTACAACTACGGGAAACATGTACTTTCCCACCCTTTTAAT
TTGACTTCCCCACCCGTGGGAACTAATGACTTTTTCCTGTGTAACATTGG
CCATCAGTTTCTTTAGGAGGAAGTTGTGGACAATGGCATAAAAAAGTGAA
TCGTCAacactgctctaacttgggacaataattggtcgaaacatgggact
ggttgatatctggcctgtattttcacttgctcttaaatctctttgacaac
aaatttgttttgataactccaacaagtttatcaatcatacttattcgttc
ctcttagagtgcacagacacttgcgtgtgttccactacagatttttttca
tatttcaatttaaaagcctactcggtgcaaaagaaaaattgtgtattttt
caatacgccgttcattaaatCAAATCGAATGACTTTGGAAGTTCGGTTAA
ATTGTAGCTGAATTGCCGTCctatgttttgtcagatagtcccaaatTAGA
GCAGGTGACGGTATCCCTGATCATCTTTGTcaatttttcgtgtttttttt
atcaccatctttcagtagtattctttgtattttgattattgtgttgtttt
tttttcattttataggGCTCCTTTCAGTGGGATTCTGGAAATTCTGATAT
GTGGGGCTCAATCCTTGATGATCTACCAGCTGAATTATCAGACGATTCTG
AAGGTGGCAATTTCGTCAATGAACCTTTAGATTGGAAGCATGAAACAACG
GATTTAATTACAGATGCATCAGTGATTCAAAATGATGTTTCAATGCTGGA
AAAGACTGCTGCAGAAGTAAAGGATGAAGGTATGTCCAAAGAAAAATCCC
CAGGGGGTATTAGGGTTGCAAGCTGATGGGTATGTACCAACCGACTTTAG
ACTTTCAGACCCTTAGCAGGACTAAAAAGcaggaaaatttttgtgaattt
gagaacccttattgggactaatctGACCAAGATCTGACTAGGAACTTATC
TGACCTGATCATCTTTTTAGGGGtacaaagttgaaattttcctattttcc
caacccttagtgagactgaaattcgattttctgatttttctaacCATTgg
tgggactttggaagtcccaaaaaggtacccttaagagCGGCACATACCCC
TGCTCCATCTGCCTAAGTacccaaaaaaatacaaatattataCACAATcc
tattttgacaattttgtgTTTTCTTTCTTTACCAAAGATTATATGAAATT
GATTAACTAAGGCTAGTGAATTGCTTTTGAAAATCTGCCTGTAGGCTAAG
TTAGGTCTCAATTGTCGTTAATCCAGGTTAATCACAATATTGTGTTTCAT
ATTCAGTTGAAGAAGATGATTACTTGAGGATAAAAAACGAGCCCATGGTT
TCCATGGCTATGCTTCTCAACAATACAATAACATCTACACAAACTGCTAA
GACTCAAACCAAAAATGTTATAACTgtgaaaaatacacaaaataAATTGG
CAATATCGAATCCTCTTATCTTGAAACCAGTATCACTAGTTAACGGCTCA
AACAACACATCAAACATTCAAACTCACATCAAAATTGGAAACAATGTTTT
TGCTATCATCCAAAAAGCTAACCCAGCTCCAAAAACAACACTTTCAGTCA
CAACCAAACCTCAGACTTTGACACAAACCTCAAACAACACAAAAGTGGAA
ACCAATACCCTGAAAATCTGTCAACCAGGAGTTGAAGCTGGCAAAACATC
TTCCTTTCTTGATCACGACTATACAGAAGAGGAGGATTTTATGGAGACGA
CTGGTGTCAGTAAGGTATGTTCATTTCAAGGTGGATTGTCTATCTTATTT
GATGGACACAGTAGCACCCATTAGAACGAGATTTAAAATATTAGTTTGTA
CACAAAAAATGACTTATTTCATATGTACCTTACAACAATTTCCACGACTT
TTAGAAAGACAATAACTAATAGAAAGCAGACATTTAAAATTAGCTTTTTT
GCTCATTCCCAGTGAACGAAAAACTTTCCTTATTGATAACACATTGTTTT
GTCTCATAGGGATTTGGACCAGGTCTTGTTTTAACTGATGAAGAAAAGAA
ATTGTTGGATTTCGAAAACATTATCATTCCTGAAGATGCTCCCCTgacga
aagaagaagaaaaatcctTGAAAAGAGTTCGGCGTAAAATCAAGAATAAG
GTATTAggattaaaattttcacaaaaaaggtGCTGGTTCTTTATAAAACC
TTGaattatattcgaattataTCTATTCGAAACCTATTATTCTATATCAA
AATCACATCAACTAAGTTTGTGTCTTATTAAAATTGCGTCTTTTGTTTTA
GCAATCAGCAATGGAAAGCCGTAGAAGACGTAAAGAATATATTGAGAATC
TTGAACAAAGGTatttgaatttataaaaatgatattattgttataACTTT
TGTATTCAAAGTAACAAACAAGCTGTGGCGATGCCAACTTTTTattagaa
taatttttaaattgCTCGTTTATTTTTGGCTGTGAATTTAGCctcaaatt
ctaaaaataactAAGAAAATCTTCACAAAATAATGACTGGTTCTCAAAAA
AGAACGCCATACTgagttttaaattttctaattaaCTGACCTTTATTTAT
ATCATTTTTTCAGAGTGAAACACTGCACAGGCGTCAACCATGGCCTCAAG
AAAAAGGTGGATAAACTTTCTGAAGACAATAAATCTCTTCTTTTGCAATT
GAAACAACTCCAAGCTGTAGTTGCAGCATCAGTCAGTTCAAatagaaaag
ctcaaaaaggAACTTGTCTTGCTGTAAGTTTAATCTTTGTAATTTcactt
atttttaaaactttgatgggaattttaaatttaatataATACATATATAA
TTTTATATtaagattattttaaaaaccttgtgACTTAATTTTCCACCATG
ATACCATTTAGCCTATATGGCAATAAATTTATATTTGGTATAGTTTATTC
CAAACGTTTTTCAAACTAGCATTAATTTCATCTCTTTTTTTCAGGTTCTG
TTACTCTCCTTCGCACTTTTCTACTTACCATTCAACCCTGTTCAATTCAA
CTCTGGATCGAAAAACACAGTCTCAACAGAAGCCCCATCACATGCTTGTA
AGTACACAAGATATTATATTGATTTTACTTGAATATATATATCGTCAAGT
GAACACGTGAGCACAATCTGAGAGCTTTGTGACACCATCTCAAGATATTC
AAGGTGTTCTCATTCGTGTACTCATTCGTGTTTGTTCAAGGCGTAGTTTA
TCAAGTCGATGACCTTATGCCAATATCTCGGTGACAATAGTTGaaggatt
tttttcatttgaaatgtaaacaaactgccttaaaagtttgtcaattttgg
cggggattaaatttgtaGTTGTACGCGCCAAGATTGATACACTTATTAAG
GTAGGCTTAAACTCGAGCTTTCCAATTATCTTGTATCTTGTATCCTTTAC
TCATTTTCTCATTATTGTTTATTCTTTAGTTCGATCAAGGACATTATTAT
CGATGCCTGAAGATCATGATTTTATCGATTCGGATCGAAACGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029767	XLOC_029767	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_116	supercontig	scaffold_116:3050..8092 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	1.91591	2.3306e-08	0	0.0046873	8.43073	1.97037e-06	6.86629	5.81733	1.94254	0.427998	5.31934	1.2648	4.92951	0	4.03113	0	0	0	0	8.36686	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00046623 vs. Swiss-Prot (Human)
Match: CR3L3 (Cyclic AMP-responsive element-binding protein 3-like protein 3 OS=Homo sapiens GN=CREB3L3 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 5.485e-28
Identity = 75/156 (48.08%), Postives = 98/156 (62.82%), Query Frame = 2

Query: 1910 LVLTDEEKKLLDFENIIIPEDAPLTKEEEKSLKRVRRKIKNKQSAMESRRRRKEYIENLEQRVKHCTGVNHGLKKKVDKLSEDNXXXXXXXXXXXXXXXXXXXXNRKAQKGTCLAVLLLSFALFYLP-FNPVQFNSGSKNTVSTEAPSHAFRSRTL 2374
            LVLT++EKKLL  E I +P   PLTK EE+ LK++RRKI+NKQSA ESR+++KEYI+ LE R+  CT  N  L++KV  L + N  L L  +  +       S+++ AQ GTC+AVLLLSFAL  LP  +P  F      +    AP   F SRTL
Sbjct:  213 LVLTEDEKKLLAKEGITLPTQLPLTKYEERVLKKIRRKIRNKQSAQESRKKKKEYIDGLETRMSACTAQNQELQRKVLHLEKQN--LSLLEQLKKLQAIVVQSTSKSAQTGTCVAVLLLSFALIILPSISP--FGPNKTESPGDFAPVRVF-SRTL 363

The following BLAST results are available for this feature:

BLAST of TCONS_00046623 vs. Swiss-Prot (Human)

BLAST of TCONS_00046623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CR3L3	5.485e-28	48.08	Cyclic AMP-responsive element-binding protein 3-li...	[more]

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TCONS_00046623 (transcript) - C. hemisphaerica