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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046622 ID=TCONS_00046622|Name=TCONS_00046622|organism=Clytia hemisphaerica|type=transcript|length=1943bp
GTGGAATGGTGTCCTGTGTTCCTTCTAAACAACTATAATAATACATAATA
ATTTTCTAATCAGGGAAAGTTTTACTGACTGATGGAGATTGGAAACAAGA
CCAACAAAGACAATGATTTGATTCCCTTTATTATTAAGCTGTTCTGTTAG
AATCTTCAAAATCTTTATAGTTATAGTTTCTTACCGTCGTTAGACAAATC
ATTCCCATTTTCTGCCAAACATTCAAATGTTAAAATGGCCCAgaaaatgc
aaagttttggtATGTTGAAAAACGAACCAAGCTGGCACTATGtaataaaa
atgagaataacATTGTTTATTCCGCTTTTTTCACGGGGTCAGAATTTTAG
TTGATTGACCAGCGTGGCTTATCTTGGTCGTTAgaattttttcatttgaa
agtttGGCAAAACATTGGAATGATTTGTCCAACGACGGTATTTTATAGCC
TTTACCACATTTTGTATCAGGTTGAATATCATTGAGGGTAGTTGGTTTTC
TAGAAACATATTTAGATGTAATTGATCAAGAATGATTCGAAATTCCCCAA
CTTGGTAGTTAGTAACGAGTAATTAACTTTTATGACTTTTAGCTATTTTT
AGTCTTGGGTGAGGGTTCAATATAAATACATCAAAGGTATGGAAGCTTGA
ATCAGTTGTAGGCTCTTCTCCATCGACTAAGGATGTCAAATAAAGTCGGA
AAGGTCAAGATTATCAGACTGTCTGCCCATTAAGAAGTACCACAGAGTGT
ATCTTGTTGTGATTATAAAAACCaggtgaaacttttgaaagaaaaattag
aacTAATTGGAAATTGGAAACACTACTAGGAAAAGTTGCTGAATTAACGA
AACATCTTGGCCGGGGTGATTGGCTTCAAGacttcagatttcaaaaatga
tgaagaaaaagTTTCATACAATACATCTTTGCCAAAATTTCTATACAATC
CCTTTAACACTTTTGATGAAGAGTAACCCCGAAGATATTTCAACACTTGA
TAAGGTTGTTGTAGTTGCTTGTGCTCTCACAATGAAGACTGATTATCAAA
ATAAGGTTAAACATTATAAGTGCTGCATGTGAATTAATACAATATATGAC
ATTACACTTTTTGTGTTATTGCTATCACATCTTCTAGGTTTGGATCTCTT
TATATTATTGCAATATACAAGATAAACGTGGTCCTTTAGACCTGCTTATT
ATGACCAGTACTTACGTTATATCTTCTCTATCAAGAGTCAGCGACAATGA
GGCCTTTGGGAAGGCTGATACCCTTTCCACTTTATTTTAAAGTGGACCAC
TTTAATTTTAATTCTAAAGTGGATAATACAGACtatctcaaaaagaaaaa
tatcattcagagaaacaaaaaaaagaagttaCTTTTGCGAATGAATTTCT
TTTGGTGCTAGAACTTATTTAGAATACTAATTCTTTTAATCTTGGCAAGT
ATGAATTTTGGCGAACATGAGGCGTTAATATcaattgtatcaaaataaca
gaaaaacttaatattttttaaaagcgTGCGATGAGATAGTCTGGGGGATA
CCCAAGATAGATTTTAGtagtttatttttattgatttaataatattttca
aagtttatACTCGTGACAGGGGGCATGAAGGTACTACATGACACTAACAT
AACACACACTACAAAGTGGTCTAGTTTTGAATATTGTCAAAAGCAGTACT
GCAGGGTGGTATTTTTTAAACTTCACTTCACTATTAGAGACCGCCAAGAT
AGGGTATAAATTTCCCCTGTTCGTACTCGGTTCATCGATTGGCTGGTGGT
GagaaaaaatctgaggaaaaaactttttgtttcttttcctgATGCTTTAA
TTTTTTACTCAATGTGAGGTTTAACACCATAGGTAATATTACAAGACCTT
GTTAAGAGCTTTAGTTAGCTTTTATGTTAGCTTTATATTCAAG Run BLAST on NCBI transcript from alignment at scaffold_115:46125..48067 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046622 ID=TCONS_00046622|Name=TCONS_00046622|organism=Clytia hemisphaerica|type=transcript|length=1943bp|location=Sequence derived from alignment at scaffold_115:46125..48067 (Clytia hemisphaerica)
CTTGAATATAAAGCTAACATAAAAGCTAACTAAAGCTCTTAACAAGGTCT
TGTAATATTACCTATGGTGTTAAACCTCACATTGAGTAAAAAATTAAAGC
ATcaggaaaagaaacaaaaagttttttcctcagattttttctCACCACCA
GCCAATCGATGAACCGAGTACGAACAGGGGAAATTTATACCCTATCTTGG
CGGTCTCTAATAGTGAAGTGAAGTTTAAAAAATACCACCCTGCAGTACTG
CTTTTGACAATATTCAAAACTAGACCACTTTGTAGTGTGTGTTATGTTAG
TGTCATGTAGTACCTTCATGCCCCCTGTCACGAGTataaactttgaaaat
attattaaatcaataaaaataaactaCTAAAATCTATCTTGGGTATCCCC
CAGACTATCTCATCGCAcgcttttaaaaaatattaagtttttctgttatt
ttgatacaattgATATTAACGCCTCATGTTCGCCAAAATTCATACTTGCC
AAGATTAAAAGAATTAGTATTCTAAATAAGTTCTAGCACCAAAAGAAATT
CATTCGCAAAAGtaacttcttttttttgtttctctgaatgatatttttct
ttttgagataGTCTGTATTATCCACTTTAGAATTAAAATTAAAGTGGTCC
ACTTTAAAATAAAGTGGAAAGGGTATCAGCCTTCCCAAAGGCCTCATTGT
CGCTGACTCTTGATAGAGAAGATATAACGTAAGTACTGGTCATAATAAGC
AGGTCTAAAGGACCACGTTTATCTTGTATATTGCAATAATATAAAGAGAT
CCAAACCTAGAAGATGTGATAGCAATAACACAAAAAGTGTAATGTCATAT
ATTGTATTAATTCACATGCAGCACTTATAATGTTTAACCTTATTTTGATA
ATCAGTCTTCATTGTGAGAGCACAAGCAACTACAACAACCTTATCAAGTG
TTGAAATATCTTCGGGGTTACTCTTCATCAAAAGTGTTAAAGGGATTGTA
TAGAAATTTTGGCAAAGATGTATTGTATGAAActttttcttcatcatttt
tgaaatctgaagtCTTGAAGCCAATCACCCCGGCCAAGATGTTTCGTTAA
TTCAGCAACTTTTCCTAGTAGTGTTTCCAATTTCCAATTAgttctaattt
ttctttcaaaagtttcacctGGTTTTTATAATCACAACAAGATACACTCT
GTGGTACTTCTTAATGGGCAGACAGTCTGATAATCTTGACCTTTCCGACT
TTATTTGACATCCTTAGTCGATGGAGAAGAGCCTACAACTGATTCAAGCT
TCCATACCTTTGATGTATTTATATTGAACCCTCACCCAAGACTAAAAATA
GCTAAAAGTCATAAAAGTTAATTACTCGTTACTAACTACCAAGTTGGGGA
ATTTCGAATCATTCTTGATCAATTACATCTAAATATGTTTCTAGAAAACC
AACTACCCTCAATGATATTCAACCTGATACAAAATGTGGTAAAGGCTATA
AAATACCGTCGTTGGACAAATCATTCCAATGTTTTGCCaaactttcaaat
gaaaaaattcTAACGACCAAGATAAGCCACGCTGGTCAATCAACTAAAAT
TCTGACCCCGTGAAAAAAGCGGAATAAACAATgttattctcatttttatt
aCATAGTGCCAGCTTGGTTCGTTTTTCAACATaccaaaactttgcatttt
cTGGGCCATTTTAACATTTGAATGTTTGGCAGAAAATGGGAATGATTTGT
CTAACGACGGTAAGAAACTATAACTATAAAGATTTTGAAGATTCTAACAG
AACAGCTTAATAATAAAGGGAATCAAATCATTGTCTTTGTTGGTCTTGTT
TCCAATCTCCATCAGTCAGTAAAACTTTCCCTGATTAGAAAATTATTATG
TATTATTATAGTTGTTTAGAAGGAACACAGGACACCATTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046622-exon-scaffold_115-1491911889:46125..48067 | TCONS_00046622-exon-scaffold_115-1491911889:46125..48067 | Clytia hemisphaerica | exon |
| TCONS_00046622-exon-scaffold_115-1510915933:46125..48067 | TCONS_00046622-exon-scaffold_115-1510915933:46125..48067 | Clytia hemisphaerica | exon |
| TCONS_00046622-exon-scaffold_115-1575043694:46125..48067 | TCONS_00046622-exon-scaffold_115-1575043694:46125..48067 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_115 | supercontig | scaffold_115:46125..48067 . |
Blast
The following BLAST results are available for this feature:
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