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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046617 ID=TCONS_00046617|Name=TCONS_00046617|organism=Clytia hemisphaerica|type=transcript|length=1821bp
agtaaagttaaaatgaaataaacgacaagtccaatatttttttgtaattt
tataaGTAAATAAGGAAAACTCCCGAGAGCAGATTCATGCaaggaaaaat
aacaaaaataatgcTTCAATTGATAAGCGATGATGCAAATTTAACCGAAT
CTGctgcaaattttttcaaatcgtCATGTTTACCATAAGTTCTTTTTAAA
ATGTCTGTAATTTTTTGTGGATGGGCACCTTGATTCTTCATTCTGTCGAT
AACAGCTTTGGCAGACTTGATAAATGGTTCACATGTTGAACTTGCGCGAC
CAATTCTCAAAATTTCTGCACCAATGGTGgaataaaaaattttagaaGGC
ATGTTACTGCATTTAAAAGGCATCCTCACAATAGAAAAAGGAAAGCTGTC
ACGCTTGTCGTATagtgaagtattgaaaaatcttCCCTGTATTGAAATAT
CTAAGTCAAGGAAAGATACTTGTGTGTCACCGTGTTCCTTCTTAAGTTCT
AATTCAGAAGGGTAGATATTTTTAAAGCATCGCTCAAATTCACCATCATC
ATTAATGGCCAAAAGATCGTCTATGAAGCGAAAGGTATGTCGAAACTTCC
TGGCAATAaaaatatcttctttttttacctttttgacATAAGCTGACTCG
TAGtaataaagaaaaagattgGCCATGAATGGAGCTGGATCCGAACCCAT
GGGAATACCAATCTTCTGTCTATAAACACGGTCtccaaaagtaaaaaaac
aattatCCATCAAGTATAACAGCTTCCTTAAAAGATTCTCTATAGTAAAT
ATCACTCCATTTGGGGATGGTCGCGTCACCCATCTAGCACCAGACTTTGT
TACAGACAACAGCTCTCGATCTCCCCCATTAAAACAAACATCAGTCAACT
CGTTTAGAACAAACAACAACTTGTCATGAGGGATTTTCGTGTACAGAGTA
GAAAAATCAAAGGTGGAAATGCAACTAGCTTTaccttttttattcaattt
atttaaacttttcaatactTCTTGgtTGTTCTCAATAACCCAAAATGTTT
TAACAGAAGAATAATAACAGCACTTCATGTTgtaattttcaatttgattG
TAAAAGAGACGAAAAACTGAAGTTACTGCCTGGGAAAGTTGTTTAACTGA
ACAGCTAGGAGCTGCAATGATAAAGCGAAATTTCAGAGggtttttatgca
tttttggtAGCCAATAGATATTGGGTAGTTTTTCATTTCCAACTGACACC
TCTATCCCAAATTTATCTTTAAGGTCTTTTTTGTGTGTACAAATAATGGT
TTTATCCTTTTTGCGTACAGATTTGTAAGTGTCAGAGCCTGTGCCATTGA
GTCCTAATTCCCTTGCCAAAACTTTGGCATAAAATCTTTTGCAAATCAAG
GAAATATTGCCAGAAGCCTTGTCAATGGGGGCAATAACAAATCTTTCTTG
TAAATCTAGTAAACTTTTTCGACAAATAGGGTCCCTCAATGTCTCTAGAA
CATGATCAAGTTTTAAAGTGGGAACAATTTGTTGTACTCTCTCGTCGATA
GCTTTTACAATTTCCACTCTCCAAGCTCTAAGAACAACCTCATCTAAATG
GTAACGCTCGCAGTAGGATTTAATGCATTTGTCAACacctttcaaaattt
ccattttagCTGCTTCAAAATCTAGTTGTTTAGGTTCACGAAATTTAGGT
CCACGAGAAAAAAGTTTACGTAATTTTTGATTGTCAATGATAGTTAAGTC
ACCTGTTATTATGTGATTATGAAAAGGATCTTTGAATTTGGAATCATTAC
ATGAACAGGGAAGAATCGTAG Run BLAST on NCBI transcript from alignment at scaffold_115:48501..50672- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046617 ID=TCONS_00046617|Name=TCONS_00046617|organism=Clytia hemisphaerica|type=transcript|length=2172bp|location=Sequence derived from alignment at scaffold_115:48501..50672- (Clytia hemisphaerica)
AGTAAAGTTAAAATGAAATAAACGACAAGTCCAATATTTTTTTGTAATTT
TATAAGTAAATAAGGAAAACTCCCGAGAGCAGATTCATGCAAGGAAAAAT
AACAAAAATAATGCTTCAATTGATAAGCGATGATGCAAATTTAACCGAAT
CTGCTGCAAATTTTTTCAAATCGTCATGTTTACCATAAGTTCTTTTTAAA
ATGTCTGTAATTTTTTGTGGATGGGCACCTTGATTCTTCATTCTGTCGAT
AACAGCTTTGGCAGACTTGATAAATGGTTCACATGTTGAACTTGCGCGAC
CAATTCTCAAAATTTCTGCACCAATGGTGGAATAAAAAATTTTAGAAGGC
ATGTTACTGCATTTAAAAGGCATCCTCACAATAGAAAAAGGAAAGCTGTC
ACGCTTGTCGTATAGTGAAGTATTGAAAAATCTTCCCTGTATTGAAATAT
CTAAGTCAAGGAAAGATACTTGTGTGTCACCGTGTTCCTTCTTAAGTTCT
AATTCAGAAGGGTAGATATTTTTAAAGCATCGCTCAAATTCACCATCATC
ATTAATGGCCAAAAGATCGTCTATGAAGCGAAAGGTATGTCGAAACTTCC
TGGCAATAAAAATATCTTCTTTTTTTACCTTTTTGACATAAGCTGACTCG
TAGTAATAAAGAAAAAGATTGGCCATGAATGGAGCTGGATCCGAACCCAT
GGGAATACCAATCTTCTGTCTATAAACACGGTCTCCAAAAGTAAAAAAAC
AATTATCCATCAAGTATAACAGCTTCCTTAAAAGATTCTCTATAGTAAAT
ATCACTCCATTTGGGGATGGTCGCGTCACCCATCTAGCACCAGACTTTGT
TACAGACAACAGCTCTCGATCTCCCCCATTAAAACAAACATCAGTCAACT
CGTTTAGAACAAACAACAACTTGTCATGAGGGATTTTCGTGTACAGAGTA
GAAAAATCAAAGGTGGAAATGCAACTAGCTTTACCTTTTTTATTCAATTT
ATTTAAACTTTTCAATACTTCTTGGTTGTTCTTAGGCTACGTCATATCTT
CCTTCGTTTCGAGCGTAAAACTCCTACTCTTCGGGCTATGAGCACTGCTC
TTGTTTTTAATATTGAAATTCTCCAGATAAATCGCATGCGCACTGAGGTT
TTAATGAAACAATAGAGAGTTTCGAAACCTAAGCCAATCAGCTGTGTTTT
AAACATTCTTTTATTTAAAATCTCTATTGATAAACATCTTTTTTAAATGT
TGTCTATTATGTTTAAACCTATTAATAAGCAATTCCCGGTGGGGGTCACT
AGTGGCCGCCTATAGCAGTGCTTATAGACCAAGAGTAAGGCCTAAAAGCC
TGGATCTGTCTATTGTGTAGACTAGGTTGTTCTCAATAACCCAAAATGTT
TTAACAGAAGAATAATAACAGCACTTCATGTTGTAATTTTCAATTTGATT
GTAAAAGAGACGAAAAACTGAAGTTACTGCCTGGGAAAGTTGTTTAACTG
AACAGCTAGGAGCTGCAATGATAAAGCGAAATTTCAGAGGGTTTTTATGC
ATTTTTGGTAGCCAATAGATATTGGGTAGTTTTTCATTTCCAACTGACAC
CTCTATCCCAAATTTATCTTTAAGGTCTTTTTTGTGTGTACAAATAATGG
TTTTATCCTTTTTGCGTACAGATTTGTAAGTGTCAGAGCCTGTGCCATTG
AGTCCTAATTCCCTTGCCAAAACTTTGGCATAAAATCTTTTGCAAATCAA
GGAAATATTGCCAGAAGCCTTGTCAATGGGGGCAATAACAAATCTTTCTT
GTAAATCTAGTAAACTTTTTCGACAAATAGGGTCCCTCAATGTCTCTAGA
ACATGATCAAGTTTTAAAGTGGGAACAATTTGTTGTACTCTCTCGTCGAT
AGCTTTTACAATTTCCACTCTCCAAGCTCTAAGAACAACCTCATCTAAAT
GGTAACGCTCGCAGTAGGATTTAATGCATTTGTCAACACCTTTCAAAATT
TCCATTTTAGCTGCTTCAAAATCTAGTTGTTTAGGTTCACGAAATTTAGG
TCCACGAGAAAAAAGTTTACGTAATTTTTGATTGTCAATGATAGTTAAGT
CACCTGTTATTATGTGATTATGAAAAGGATCTTTGAATTTGGAATCATTA
CATGAACAGGGAAGAATCGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046617-exon-scaffold_115-1575043694:49649..50672 | TCONS_00046617-exon-scaffold_115-1575043694:49649..50672 | Clytia hemisphaerica | exon |
| TCONS_00046617-exon-scaffold_115-1575043694:48501..49297 | TCONS_00046617-exon-scaffold_115-1575043694:48501..49297 | Clytia hemisphaerica | exon |
| TCONS_00046617-exon-scaffold_115-1510915933:49649..50672 | TCONS_00046617-exon-scaffold_115-1510915933:49649..50672 | Clytia hemisphaerica | exon |
| TCONS_00046617-exon-scaffold_115-1510915933:48501..49297 | TCONS_00046617-exon-scaffold_115-1510915933:48501..49297 | Clytia hemisphaerica | exon |
| TCONS_00046617-exon-scaffold_115-1491911889:49649..50672 | TCONS_00046617-exon-scaffold_115-1491911889:49649..50672 | Clytia hemisphaerica | exon |
| TCONS_00046617-exon-scaffold_115-1491911889:48501..49297 | TCONS_00046617-exon-scaffold_115-1491911889:48501..49297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_115 | supercontig | scaffold_115:48501..50672 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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