TCONS_00046616 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046616
Unique NameTCONS_00046616
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046616 ID=TCONS_00046616|Name=TCONS_00046616|organism=Clytia hemisphaerica|type=transcript|length=286bp
GTACAGAAAAAATAGAGAAATTGCAGTTTTGtcgtaaataaaaaaaaaca
tttttgaaataaatacaATTTATATTTAGGATCATCGCTATGGTCGAAAT
CGTCCTCACAACAATCTTCGAGCCAATCACAATCTTCGAGTCAATCACAA
TCTTCGAGCCAATCACAATCTTCGAGCCAATCATCAATCGAATCTGGTGA
ACCATCTTTCAAATGGAAGACAGGTGATGATCTCACTGAAATTGAAAGGA
CCAAAGCGGTTATTTATGTTTTGGATCGGTATACAG
Run BLAST on NCBI

transcript from alignment at scaffold_115:39024..39440-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046616 ID=TCONS_00046616|Name=TCONS_00046616|organism=Clytia hemisphaerica|type=transcript|length=417bp|location=Sequence derived from alignment at scaffold_115:39024..39440- (Clytia hemisphaerica)
GTACAGAAAAAATAGAGAAATTGCAGTTTTGTCGTAAATAAAAAAAAACA
TTTTTGAAATAAATACAATTTATATTTAGGATCATCGCTATGGTCGAAAT
CGTCCTCACAACAATCTTCGAGCCAATCACAATCTTCGAGTCAATCACAA
TCTTCGAGCCAATCACAATCTTCGAGCCAATCATCAATCGAATCTGGTGA
ACCATCTTTCAAATGGAAGACAGGTATTTTCCGTATTTTCCGTATCAGCG
AAAGTTGAAATGTAAAGCCGTAAAATTCCACATCACCGAGTTAGTGCTCA
TTCTGGTGCTTTAGGTAGGTTGAGTGCATCGCAAAGTATCTTTTGTTTCT
TCAGGTGATGATCTCACTGAAATTGAAAGGACCAAAGCGGTTATTTATGT
TTTGGATCGGTATACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029760XLOC_029760Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046616-exon-scaffold_115-1575043694:39218..39440TCONS_00046616-exon-scaffold_115-1575043694:39218..39440Clytia hemisphaericaexon
TCONS_00046616-exon-scaffold_115-1575043694:39024..39086TCONS_00046616-exon-scaffold_115-1575043694:39024..39086Clytia hemisphaericaexon
TCONS_00046616-exon-scaffold_115-1510915933:39218..39440TCONS_00046616-exon-scaffold_115-1510915933:39218..39440Clytia hemisphaericaexon
TCONS_00046616-exon-scaffold_115-1510915933:39024..39086TCONS_00046616-exon-scaffold_115-1510915933:39024..39086Clytia hemisphaericaexon
TCONS_00046616-exon-scaffold_115-1491911889:39218..39440TCONS_00046616-exon-scaffold_115-1491911889:39218..39440Clytia hemisphaericaexon
TCONS_00046616-exon-scaffold_115-1491911889:39024..39086TCONS_00046616-exon-scaffold_115-1491911889:39024..39086Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_115supercontigscaffold_115:39024..39440 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.790423	0	0	5.49944	0.649043	5.07833	3.30739	1.15779	0.956073	1.85598	0	0.304587	1.58159	1.39929	1.04014	1.61115	1.34609	0.486842	0.509445	0.538029	1.25051	1.05022	0	3.93369	2.63305	0	0.670197	0.508321	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046616 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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