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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046607 ID=TCONS_00046607|Name=TCONS_00046607|organism=Clytia hemisphaerica|type=transcript|length=966bp
TCGACGTAACCCATCTCTTGCAATTTGGCTTCTGATTTGATGATGTCGTC
TTTGTCTTTTGGATTAGCTCCCAACTTCTTGAGCTGTTGGTAGTAAATTT
TCAGAGCAATATTCTTGTTTGGTGCTAATTTTGATACTTTGTCGACAAAT
GGAAGACGAGCTGTGATAATGTTTTGGTTGGTGTCAATGTCAATGGATGA
GTTAATGACGTCTTGCTCAACCTCCTCTTTGATGCTAACTTCCCTTTGAT
GAATGGAGTTTTTGCAATCTTTGCAGTTTCTGCACATTACACATCGATAG
GTGATTTCTGTCCCAGTTGATTCAGTTGATTCGAAGCGTTTGAGATTCTG
GGATGGAAATGAGAGTTTGGAAACATCTGGATTGACTTGGAGTCCATTCT
GGTAGAGCTTGAATTGCTGACTGCAGAAGCTGTTGAAGGTTGATTGATTG
AAGAACTGTCGATGGATTGCAGTGAAGATGGGATGTGGACCACCAATTAC
ACCTTTGCCACCATCTGGATTGCGGAACACTGATTTGTAGATTGATAATC
CTGATGGCATTTGAAATACAAGTTTGGGGCTGTATCTCAAATATTTGACC
CCAATCATGAAATGTACGTCACCACCCACTGTTGCTGATGTCTTCGGGAG
TGTTGATGGGTTGCCGGGGTAGCTCTCTCTGATGGCTTGGTTGACCTCAT
GGAGCGGATATTCAGGAAAAGTTGCAGTGAGCTGTTGCAGGCATGTACCA
TCAGATAGCATAGCATCTTGTCCGTTTGCCATTGGAATCTTGACGATGTA
TGATCCAAGAGATGTGCAGGTTGTTGTGTTACCTACACCACCAATCTGAG
TGGCAATGGATGATTCTTTGATAGCTGATGTTCCAAGGTCCTTGATTGCA
GAGTGTTTGATCAGGAAATCGCTGCACCCATTGTCAAAGAAGATTGTAAA
GTGTTTGTTGTTGANN Run BLAST on NCBI protein sequence of TCONS_00046607-protein >TCONS_00046607-protein ID=TCONS_00046607-protein|Name=TCONS_00046607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
XNNKHFTIFFDNGCSDFLIKHSAIKDLGTSAIKESSIATQIGGVGNTTTC
TSLGSYIVKIPMANGQDAMLSDGTCLQQLTATFPEYPLHEVNQAIRESYP
GNPSTLPKTSATVGGDVHFMIGVKYLRYSPKLVFQMPSGLSIYKSVFRNP
DGGKGVIGGPHPIFTAIHRQFFNQSTFNSFCSQQFKLYQNGLQVNPDVSK
LSFPSQNLKRFESTESTGTEITYRCVMCRNCKDCKNSIHQREVSIKEEVE
QDVINSSIDIDTNQNIITARLPFVDKVSKLAPNKNIALKIYYQQLKKLGA
NPKDKDDIIKSEAKLQEMGYV Run BLAST on NCBI transcript from alignment at scaffold_114:153142..154107 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046607 ID=TCONS_00046607|Name=TCONS_00046607|organism=Clytia hemisphaerica|type=transcript|length=966bp|location=Sequence derived from alignment at scaffold_114:153142..154107 (Clytia hemisphaerica)
NNTCAACAACAAACACTTTACAATCTTCTTTGACAATGGGTGCAGCGATT
TCCTGATCAAACACTCTGCAATCAAGGACCTTGGAACATCAGCTATCAAA
GAATCATCCATTGCCACTCAGATTGGTGGTGTAGGTAACACAACAACCTG
CACATCTCTTGGATCATACATCGTCAAGATTCCAATGGCAAACGGACAAG
ATGCTATGCTATCTGATGGTACATGCCTGCAACAGCTCACTGCAACTTTT
CCTGAATATCCGCTCCATGAGGTCAACCAAGCCATCAGAGAGAGCTACCC
CGGCAACCCATCAACACTCCCGAAGACATCAGCAACAGTGGGTGGTGACG
TACATTTCATGATTGGGGTCAAATATTTGAGATACAGCCCCAAACTTGTA
TTTCAAATGCCATCAGGATTATCAATCTACAAATCAGTGTTCCGCAATCC
AGATGGTGGCAAAGGTGTAATTGGTGGTCCACATCCCATCTTCACTGCAA
TCCATCGACAGTTCTTCAATCAATCAACCTTCAACAGCTTCTGCAGTCAG
CAATTCAAGCTCTACCAGAATGGACTCCAAGTCAATCCAGATGTTTCCAA
ACTCTCATTTCCATCCCAGAATCTCAAACGCTTCGAATCAACTGAATCAA
CTGGGACAGAAATCACCTATCGATGTGTAATGTGCAGAAACTGCAAAGAT
TGCAAAAACTCCATTCATCAAAGGGAAGTTAGCATCAAAGAGGAGGTTGA
GCAAGACGTCATTAACTCATCCATTGACATTGACACCAACCAAAACATTA
TCACAGCTCGTCTTCCATTTGTCGACAAAGTATCAAAATTAGCACCAAAC
AAGAATATTGCTCTGAAAATTTACTACCAACAGCTCAAGAAGTTGGGAGC
TAATCCAAAAGACAAAGACGACATCATCAAATCAGAAGCCAAATTGCAAG
AGATGGGTTACGTCGA Coding sequence (CDS) from alignment at scaffold_114:153142..154107 >TCONS_00046607 ID=TCONS_00046607|Name=TCONS_00046607|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_114:153142..154107 (Clytia hemisphaerica)
NTCAACAACAAACACTTTACAATCTTCTTTGACAATGGGTGCAGCGATTT
CCTGATCAAACACTCTGCAATCAAGGACCTTGGAACATCAGCTATCAAAG
AATCATCCATTGCCACTCAGATTGGTGGTGTAGGTAACACAACAACCTGC
ACATCTCTTGGATCATACATCGTCAAGATTCCAATGGCAAACGGACAAGA
TGCTATGCTATCTGATGGTACATGCCTGCAACAGCTCACTGCAACTTTTC
CTGAATATCCGCTCCATGAGGTCAACCAAGCCATCAGAGAGAGCTACCCC
GGCAACCCATCAACACTCCCGAAGACATCAGCAACAGTGGGTGGTGACGT
ACATTTCATGATTGGGGTCAAATATTTGAGATACAGCCCCAAACTTGTAT
TTCAAATGCCATCAGGATTATCAATCTACAAATCAGTGTTCCGCAATCCA
GATGGTGGCAAAGGTGTAATTGGTGGTCCACATCCCATCTTCACTGCAAT
CCATCGACAGTTCTTCAATCAATCAACCTTCAACAGCTTCTGCAGTCAGC
AATTCAAGCTCTACCAGAATGGACTCCAAGTCAATCCAGATGTTTCCAAA
CTCTCATTTCCATCCCAGAATCTCAAACGCTTCGAATCAACTGAATCAAC
TGGGACAGAAATCACCTATCGATGTGTAATGTGCAGAAACTGCAAAGATT
GCAAAAACTCCATTCATCAAAGGGAAGTTAGCATCAAAGAGGAGGTTGAG
CAAGACGTCATTAACTCATCCATTGACATTGACACCAACCAAAACATTAT
CACAGCTCGTCTTCCATTTGTCGACAAAGTATCAAAATTAGCACCAAACA
AGAATATTGCTCTGAAAATTTACTACCAACAGCTCAAGAAGTTGGGAGCT
AATCCAAAAGACAAAGACGACATCATCAAATCAGAAGCCAAATTGCAAGA
GATGGGTTACGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046607-exon-scaffold_114-1491911889:153142..154107 | TCONS_00046607-exon-scaffold_114-1491911889:153142..154107 | Clytia hemisphaerica | exon |
| TCONS_00046607-exon-scaffold_114-1510915933:153142..154107 | TCONS_00046607-exon-scaffold_114-1510915933:153142..154107 | Clytia hemisphaerica | exon |
| TCONS_00046607-exon-scaffold_114-1575043694:153142..154107 | TCONS_00046607-exon-scaffold_114-1575043694:153142..154107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_114 | supercontig | scaffold_114:153142..154107 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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