TCONS_00046598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046598
Unique NameTCONS_00046598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length733

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046598 ID=TCONS_00046598|Name=TCONS_00046598|organism=Clytia hemisphaerica|type=transcript|length=733bp
GTCCATTCAACAAAAATCACGTAAACTCAATGTACTTCGTGAAAGATGTT
TTTTGAGTTTGGATGAGAAAGGCTTTTCAGAACGTTTGACATCATAGGGG
CCTTCTAATAGCGCGAATTCCTCTTTGATTCTCTGCAGCAAATCAATGGT
AATGTCATCATTCAACTTTGCTGATGTCTCGATGTATGTGTGCTCAAAAT
TGCATGTGACTCGCTCATTCAGTAGTCGTTTGCTGGCCACGCGGTGTGGC
TTGTCCGATTTGTTTCCAATGATAAGAATCGCTTTTCTCGGACATTGTCT
TTTGATGTCTTTGATCAACTTCTCGGCGTGGTTTAACGAGCCCATCGACG
TCAAGTCGAAAACAACGACGACAACGTCCGATTTTTGTATAGTAAGTCTG
TCCATGGCTGGAAATGAAAAAGCGCCAGCTGTGTCCGAAATTTGTAAGCT
TAATCGACATGTGTTATCCACTTTGCTTTCGTAATCATAAAAATCGAAAA
CGGTTGGATTATAATGTTGGTGAAATTTCTTGCCCATTAGCCTGTGAACG
ATGGTTGTTTTGCCACTAGCCGCTGATCCCATGAAAGCCACATTAATAAC
AAATTCTTGAtctacttttgatttttttcgtaACACGTTTATCTTGTCGT
GGTTGCGCATAACAGAATTCAATGAAAGTCTTCTGGCGGCCATTTTGTGT
CACAGAACTGTGATGGAATCCACCTTCCTCGTC
Run BLAST on NCBI

protein sequence of TCONS_00046598-protein

>TCONS_00046598-protein ID=TCONS_00046598-protein|Name=TCONS_00046598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MAARRLSLNSVMRNHDKINVLRKKSKVDQEFVINVAFMGSAASGKTTIVH
RLMGKKFHQHYNPTVFDFYDYESKVDNTCRLSLQISDTAGAFSFPAMDRL
TIQKSDVVVVVFDLTSMGSLNHAEKLIKDIKRQCPRKAILIIGNKSDKPH
RVASKRLLNERVTCNFEHTYIETSAKLNDDITIDLLQRIKEEFALLEGPY
DVKRSEKPFSSKLKKHLSRSTLSLRDFC
Run BLAST on NCBI

transcript from alignment at scaffold_114:45956..46688

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046598 ID=TCONS_00046598|Name=TCONS_00046598|organism=Clytia hemisphaerica|type=transcript|length=733bp|location=Sequence derived from alignment at scaffold_114:45956..46688 (Clytia hemisphaerica)
GACGAGGAAGGTGGATTCCATCACAGTTCTGTGACACAAAATGGCCGCCA
GAAGACTTTCATTGAATTCTGTTATGCGCAACCACGACAAGATAAACGTG
TtacgaaaaaaatcaaaagtagaTCAAGAATTTGTTATTAATGTGGCTTT
CATGGGATCAGCGGCTAGTGGCAAAACAACCATCGTTCACAGGCTAATGG
GCAAGAAATTTCACCAACATTATAATCCAACCGTTTTCGATTTTTATGAT
TACGAAAGCAAAGTGGATAACACATGTCGATTAAGCTTACAAATTTCGGA
CACAGCTGGCGCTTTTTCATTTCCAGCCATGGACAGACTTACTATACAAA
AATCGGACGTTGTCGTCGTTGTTTTCGACTTGACGTCGATGGGCTCGTTA
AACCACGCCGAGAAGTTGATCAAAGACATCAAAAGACAATGTCCGAGAAA
AGCGATTCTTATCATTGGAAACAAATCGGACAAGCCACACCGCGTGGCCA
GCAAACGACTACTGAATGAGCGAGTCACATGCAATTTTGAGCACACATAC
ATCGAGACATCAGCAAAGTTGAATGATGACATTACCATTGATTTGCTGCA
GAGAATCAAAGAGGAATTCGCGCTATTAGAAGGCCCCTATGATGTCAAAC
GTTCTGAAAAGCCTTTCTCATCCAAACTCAAAAAACATCTTTCACGAAGT
ACATTGAGTTTACGTGATTTTTGTTGAATGGAC

Coding sequence (CDS) from alignment at scaffold_114:45956..46688

>TCONS_00046598 ID=TCONS_00046598|Name=TCONS_00046598|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_114:45956..46688 (Clytia hemisphaerica)
ATGGCCGCCAGAAGACTTTCATTGAATTCTGTTATGCGCAACCACGACAA
GATAAACGTGTtacgaaaaaaatcaaaagtagaTCAAGAATTTGTTATTA
ATGTGGCTTTCATGGGATCAGCGGCTAGTGGCAAAACAACCATCGTTCAC
AGGCTAATGGGCAAGAAATTTCACCAACATTATAATCCAACCGTTTTCGA
TTTTTATGATTACGAAAGCAAAGTGGATAACACATGTCGATTAAGCTTAC
AAATTTCGGACACAGCTGGCGCTTTTTCATTTCCAGCCATGGACAGACTT
ACTATACAAAAATCGGACGTTGTCGTCGTTGTTTTCGACTTGACGTCGAT
GGGCTCGTTAAACCACGCCGAGAAGTTGATCAAAGACATCAAAAGACAAT
GTCCGAGAAAAGCGATTCTTATCATTGGAAACAAATCGGACAAGCCACAC
CGCGTGGCCAGCAAACGACTACTGAATGAGCGAGTCACATGCAATTTTGA
GCACACATACATCGAGACATCAGCAAAGTTGAATGATGACATTACCATTG
ATTTGCTGCAGAGAATCAAAGAGGAATTCGCGCTATTAGAAGGCCCCTAT
GATGTCAAACGTTCTGAAAAGCCTTTCTCATCCAAACTCAAAAAACATCT
TTCACGAAGTACATTGAGTTTACGTGATTTTTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029742XLOC_029742Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046598-proteinTCONS_00046598-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046598-exon-scaffold_114-1491911889:45956..46688TCONS_00046598-exon-scaffold_114-1491911889:45956..46688Clytia hemisphaericaexon
TCONS_00046598-exon-scaffold_114-1510915933:45956..46688TCONS_00046598-exon-scaffold_114-1510915933:45956..46688Clytia hemisphaericaexon
TCONS_00046598-exon-scaffold_114-1575043694:45956..46688TCONS_00046598-exon-scaffold_114-1575043694:45956..46688Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_114supercontigscaffold_114:45956..46688 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.365219	0.144301	2.47431	2.46047	5.11739	2.82214	2.48348	8.76486	3.91904	2.58631	7.42669	4.20248	0.549696	0.750825	0.414915	0.374752	0.0654616	0	0	0	0	0	0	0	0.0957829	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00046598 vs. Swiss-Prot (Human)
Match: DIRA2 (GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.329e-19
Identity = 52/158 (32.91%), Postives = 84/158 (53.16%), Query Frame = -2 
Query:  127 VAFMGSAASGKTTIVHRLMGKKFHQHYNPTVFDFYDYESKVDNTCRLSLQISDTAGAFSFPAMDRLTIQKSDVVVVVFDLTSMGSLNHAEKL---IKDIKRQCPRKAILIIGNKSDKPHRVASKRLLNERVTCNFEHTYIETSAKLNDDITIDLLQRI 591
            VA  G+   GK+++V R +   F + Y PTV D Y      D +   +LQI+DT G+  FPAM RL+I K    ++V+ +TS  SL   + +   I +IK       I+++GNK D+      +    E +   ++  ++ETSAKLN ++  +L Q +
Sbjct:   10 VAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSI-CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVK-ELFQEL 165
The following BLAST results are available for this feature:
BLAST of TCONS_00046598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DIRA22.329e-1932.91GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIR... [more]
back to top