TCONS_00046586 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046586
Unique Name	TCONS_00046586
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1188

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_114:108978..113835+
coding sequence from alignment at scaffold_114:108978..113835+

transcript sequence

>TCONS_00046586 ID=TCONS_00046586|Name=TCONS_00046586|organism=Clytia hemisphaerica|type=transcript|length=1188bp
CGGTGATTTATTGTTAGACGCTGGTGTCGATGTGAATTTTGTTGACGAGA
ACGGCTTGACGATCCTGATGAAACATTTAACTGGAACGCTGTGTGAAGAA
CAATATACACTTGTCAAACATCTGCTAGAGAAATATCACGCCAATCCTCA
GTTGACGGATGGCTCAAATTCTAATCTGTTCCATTACCTAGCGCGATCAT
CGATTTACACCAATGTTTTGTATGAGCGATATCAAACCATTGACAAAGAA
ATGATGAGCATCTCAATAAAAATCGCTGAACTTTTGTTAAAGGCGGGCGT
TGATATCAACGGAGTGAGTGATGAGGGCGTTACACCCTTAATTGCTGCAG
TTGCTAATGAGAACTTTCCACTGACTGATTTTCTTCTTGAGAATGGCGCA
TCTGCCACTGTTGGGAAAACGGAAGATGATAATAAAACTGTATTACATTT
CATCGACCAAAACTATGACAAAGACCTGTCTGCTTATGTGGTGGATAAAT
CTTTCACATCAAAGTCAAACGAGGAATCGGAAAAACGTGGAAAGATGTAC
AACCATGCTCAACTTGAGCTTTTGAAAAACCTTCTCAAGCATGGGGCAGG
ATGTAAACAGTATACGCAAAGACATGCATTCGTTATTCACGTTCGCTTTA
TCCCAATCCTACTTAAAAATCTGTGAAATTTTGTTGGTCGACCCGAACAT
AGACTTGATGGTGTACGAGAATAAACACGGTCAAAATGTTTTACACATGA
TGTTGGGAAAGCTGGAGCCAGAGGACAAGAAAACTTTTCAATTGTTTCAT
AATATTCTGAAAAAGTGTAATTTGACCAAGGAGTTCAGCAACAAGGTAGA
CAATAACGGTTTCACACCTTTGCTATCATTCGTCTACAACATTGCAAGTA
AAAACCAGACGGAGAGAGCTCTACCGCAGTACACCAAACTGGTTAAAACT
TTGTTGACAGAATGTTTCGTTGATACCGATATTCTGGTTCAAAAGAAAGC
AATCGGGCCTGACGACAAGCCTGCTCTACAATACACTTTGTGGCCTAAAC
CCTCCCTGGATTACGAAAAATCAGACGAAAATCAAGAAAAGTTCAAAGGT
TACAACAGTTTTGGACAAATGAACATTTTCCATTTACTTGCTATGAAGAA
TATCAGCCGAGAAGTTATGGAGGTGTTTTACAAATATG

Run BLAST on NCBI

protein sequence of TCONS_00046586-protein

>TCONS_00046586-protein ID=TCONS_00046586-protein|Name=TCONS_00046586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
GDLLLDAGVDVNFVDENGLTILMKHLTGTLCEEQYTLVKHLLEKYHANPQ
LTDGSNSNLFHYLARSSIYTNVLYERYQTIDKEMMSISIKIAELLLKAGV
DINGVSDEGVTPLIAAVANENFPLTDFLLENGASATVGKTEDDNKTVLHF
IDQNYDKDLSAYVVDKSFTSKSNEESEKRGKMYNHAQLELLKNLLKHGAG
CKQYTQRHAFVIHVRFIPILLKNL

Run BLAST on NCBI

transcript from alignment at scaffold_114:108978..113835+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046586 ID=TCONS_00046586|Name=TCONS_00046586|organism=Clytia hemisphaerica|type=transcript|length=4858bp|location=Sequence derived from alignment at scaffold_114:108978..113835+ (Clytia hemisphaerica)
CGGTGATTTATTGTTAGACGCTGGTGTCGATGTGAATTTTGTTGACGAGA
ACGGCTTGACGATCCTGATGAAACATTTAACTGGAACGCTGTGTGAAGAA
CAATATACACTTGTCAAACATCTGCTAGAGAAATATCACGCCAATCCTCA
GTTGACGGATGGCTCAAATTCTAATCTGGTAAGTGAcggaccgtagtgca
gtggtagagcatcctgctacggtgcgcaaggttgtgtgCTCAACCCCCAG
CTGGGtaataccaaagatttccaaaatgatACTTGATGTTTCCATGCTTG
ATACTCAGCAGTTAAGAGaatgatcaagggtaagtggagcaatccatgGA
GAAGTGTTTCCcacccctaccttcgggtagatagctatcgaaagaggggc
cttcgggtcgcctctgggtcgcctccgactgcgatCGCAGACTCACTTAC
TTAGTAAGTGAGGGATAAAACTCAATgctgtttcaatgttcatctaacgt
aCATTACGTTTCTATAACGTACAAGCTGAACGTTGAAACATCATTCAATG
TTTGCTAGCTGCAAAACCTCGAAAAAGTTGACGCGAAGGAAGGGTAGAAA
CTCTTGCCTCAAATTTTTCTACTTAAACTTCCTCTGTTTTGTTTAGAATA
AAACTTAGGCCTCTAGTACTTTTTATATTCTTTGATATTCCTCGGCCTTG
AACTCACAACCTTGCACATCGTAGCTAGATGCTCCAtgattgagtttaaa
gcctttAACGGCAAGAGATGAATCTTCAACATTCTcaagcaaagaaaaat
gaaacctGAAGATTTGTGTCTCATTTAGAATGACGTTTTTAACCTAGTCT
TTTCTTCGTTTTCGTGcggcaaaaattttcaatttcccatccaggagtat
CGTATATAACTCCTTCGGGGCGCTGAAATCAATGACCATGCTACGATTCT
CTTCATATTACATCAAACTCAAATCGATCATCATTTTATTGTGTTTTCCC
TTATGTATTTCAGTTCCATTACCTAGCGCGATCATCGATTTACACCAATG
TTTTGTATGAGCGATATCAAACCATTGACAAAGAAATGATGAGCATCTCA
ATAAAAATCGCTGAACTTTTGTTAAAGGCGGGCGTTGATATCAACGGAGT
GAGTGATGAGGGCGTTACACCCTTAATTGCTGCAGTTGCTAATGTAagta
gtatttttgaaatttatttccaCTTGATTCGGAATTTCGTTTTGATAATG
AAACCCATATAATATAGTATATACATAGTATATGTATATACTATCGGGGA
AAACCGGAGAAGTGGGCGAAGAAAAGTGACGGTTTTCTCCGTTCAATTTT
TGCAAGGTATATAGTTATAAAGACCATGATCAGACGATCTCGTATCGCTC
CCGTATggttttcgttacggatcgagagtgttcatattggttttggAACG
TTTTAGAGCAAGAAAACGAAGCAATTCGGCTCCGCTAAAAATAGTGGAAT
GGAGCcttttcgatctgttttgctttgtaacgtgtTTTCTTTTggcgttt
cgaattttgacgttaaCACAGTGTTACGGAACGTTTTAATTTGGAACGAT
GTGGAGCCGTAACGTTTGAATATGGTCCAAATATATTTGAGTATTGACAC
CTAATTCAATTAGTATTTCTTGTTATTTTAGGAGAACTTTCCACTGACTG
ATTTTCTTCTTGAGAATGGCGCATCTGCCACTGTTGGGAAAACGGAAGAT
GATAATAAAACTGTATTACATTTCATCGACCAAAACTATGACAAAGACCT
GTCTGCTTATGTGGTGGTAAGTTTTCTCAACCTCGTCTCCGTCGCCTGTG
TACACCGGTTTAATATCGAAAATAACGTTTATACAGTTGAAGCTCTCTAA
TTTGACGTTCTGCTATTCGATAGGCTCCCTTATTCGATGAAATTTAAAGT
ccctgtcaacaagaaactctcataaacgatgctcccttattcgatgaaaa
tccaattccccttgaagatcgaattagagagcgttaaCTGTACTTGGATA
CGCCAGAGAACACTAAGGTTGAAGTTTTATTTGATTTGCTCTTGTTATGA
GCAAAATTTTTCCTGGTGGTTCTTTATATTGTATGTCTGGTTTACTGTTC
TCAGTTCAAATAGATGAACAATTGCCTTCTATGTCACTCAAAGATTCatt
ttaaaagccaaaataaCTTGGTTGGAGAGACATGttttttgaaagtaaat
ttatttgattgaatttatatatctaaagaaaattaaaacaagtgTGGTAA
ATCAATGCCATAAGAGTGCTCGAGTAGTTAGGAACCAGAGCcatatatca
atattttaaaagttatctttcattaaaacttaaaaagtgcaTCACTCTGA
CTTCCGTGCTCTAATGAAAGTtagaaaaatcttatatataagGATCAAAA
CACAAGTAATCACTTTCTTTAGTTCACTCATCTCTCTTAACCATACACTA
CAcgctttttcataagaacatccaaagccTTAGGACTTTCTTAActgttt
gagttttaagcctaaaattgttcctaacatgttcttattttcgccagttt
ttattatttttgtcaattttcttaagaaattcgGTGTTTTAAGATTccac
aaagccttgaaatgttcttaacatgttcttaacattctggccatcgaagc
cttatgttcttgtaaaaaaaaaacatgtacatacACAAATGAAACAAACG
CTTGAACAGGAGGCACATCGACAAAAAAAAGCATTAAGGaataaatttac
aaatagaaatacAACATTCAACAAAGGCACAAATATAAATAAGGGACACG
ACAAGATGAAGACAGATCCTAAAGTCAGATGCGGCCTTGAGTAAGCACCA
CTGATCTTTATATACcatggaccaagtttctcaatcctggcccagcaaaa
tctttgatcagagttttttgaaaagtgatacCCTAAATGGCGGCAATACT
CAATAGCGGTGCAAATgtatcgagagcgctagatctacgtTCCCTTGAAT
ACTTATAGATGTAGCGCCGTtaaggccggtttccacttgcCCGCGCTGTG
ATCGcatcttttggcttcaatcctttttgcttggaaaaaagattacgtca
taaaaatgtagcgcgccctagaaaaaaaagttgaacacatttcaacttta
tCCAACCGTtacgttacgtcagatcgcaccaatggagttgcttcattttt
cttttgaccaatagcgggTAAGCTCTGTTCGAAAAGTgcaatcgcagcgc
gcgcaagtggagaccggcctttagacgTAATTTTTTAACAcaggcttctt
tgcgggtaccaattcaaaaaaaacttcgatcaataAAGGTCCGTGGTGAG
CACTATCTGCTATTCACGAGTCATCTTTACCAGAAAATCAATTTAATGTT
ATAATACTGTATTACTTTTCTGTAGGATAAATCTTTCACATCAAAGTCAA
ACGAGGAATCGGAAAAACGTGGAAAGATGTACAACCATGCTCAACTTGAG
CTTTTGAAAAACCTTCTCAAGCATGGGGCAGGATGTAAACAGTATACGCA
AAGACATGCATTCGTTATTCACGTTCGCTTTATCCCAATCCTACTTAAAA
ATCTGTGAAATTTTGTTGGTCGACCCGAACATAGACTTGATGGTGTACGA
GAATAAACACGGTCAAAATGTTTTACACATGATGTTGGGAAAGCTGGAGC
CAGAGGACAAGAAAACTTTTCAATTGTTTCATAATATTCTGAAAAAGGTA
TCTCACGTAGTCTTTCTttcacaaattattttttttcatgtaaCTTCCTA
TGGAAGCCGAGAAAGGTCGGTGcgcgaaaatttcaaaaacctgtCGTGAT
CTTTTTCAAATTGTCGCAATCTTGAACAGCGACAGCTTGAAAAATATCGT
GCTAGCTTCTGGAAACGCGATTGTTTGAGAATCATCGAATGTCATATAAA
CATTATACTCCATACCGCGAAATTCCtataactcaaacaaatttgtattc
cccgtgcgtgttcgagctGTGGAGACTGTAAATTATAtcaatttatatta
ttttctttttcaccagTGTAATTTGACCAAGGAGTTCAGCAACAAGGTAG
ACAATAACGGTTTCACACCTTTGCTATCATTCGTCTACAACATTGCAAGT
AAAAACCAGACGGAGAGAGCTCTACCGCAGTACACCAAACTGGTTAAAAC
TTTGTTGACAGAATGTTTCGTTGATACCGATATTCTGGTTCAAAAGAAAG
CAATCGGGCCTGACGACAAGGTTAATTTTCTCATCCATTTTCTTTAGATG
CTAGACGGGCATTCCTCAAGGTGTCCTGTAACCTATGTACCGGTCAATGT
TCTTAgctaaattattatttttcttattatttaaaaaaaaaaaaatgtca
cggtggagtgcgttggtttgagttttctagggACTtattattaagctgtg
catttttctgatagtggattattattattaaaaatatttctttttcaaaa
agtctttttcataatgttgatagtttctctttccaaattattttctcaaa
aatgtttaattttattatcaggtaggtccataaaagtatagctggtgata
tcaaaatcaaaatcttcttaATTCTATATCTTCTACTAGCCTGCTCTACA
ATACACTTTGTGGCCTAAACCCTCCCTGGATTACGAAAAATCAGACGAAA
ATCAAGAAAAGTTCAAAGGTTACAACAGTTTTGGACAAATGAACATTTTC
CATTTACTTGCTATGAAGAATATCAGCCGAGAAGTTATGGAGGTGTTTTA
CAAATATG

Coding sequence (CDS) from alignment at scaffold_114:108978..113835+

>TCONS_00046586 ID=TCONS_00046586|Name=TCONS_00046586|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_114:108978..113835+ (Clytia hemisphaerica)
GGTGATTTATTGTTAGACGCTGGTGTCGATGTGAATTTTGTTGACGAGAA
CGGCTTGACGATCCTGATGAAACATTTAACTGGAACGCTGTGTGAAGAAC
AATATACACTTGTCAAACATCTGCTAGAGAAATATCACGCCAATCCTCAG
TTGACGGATGGCTCAAATTCTAATCTGTTCCATTACCTAGCGCGATCATC
GATTTACACCAATGTTTTGTATGAGCGATATCAAACCATTGACAAAGAAA
TGATGAGCATCTCAATAAAAATCGCTGAACTTTTGTTAAAGGCGGGCGTT
GATATCAACGGAGTGAGTGATGAGGGCGTTACACCCTTAATTGCTGCAGT
TGCTAATGAGAACTTTCCACTGACTGATTTTCTTCTTGAGAATGGCGCAT
CTGCCACTGTTGGGAAAACGGAAGATGATAATAAAACTGTATTACATTTC
ATCGACCAAAACTATGACAAAGACCTGTCTGCTTATGTGGTGGATAAATC
TTTCACATCAAAGTCAAACGAGGAATCGGAAAAACGTGGAAAGATGTACA
ACCATGCTCAACTTGAGCTTTTGAAAAACCTTCTCAAGCATGGGGCAGGA
TGTAAACAGTATACGCAAAGACATGCATTCGTTATTCACGTTCGCTTTAT
CCCAATCCTACTTAAAAATCTGTGAGGTGATTTATTGTTAGACGCTGGTG
TCGATGTGAATTTTGTTGACGAGAACGGCTTGACGATCCTGATGAAACAT
TTAACTGGAACGCTGTGTGAAGAACAATATACACTTGTCAAACATCTGCT
AGAGAAATATCACGCCAATCCTCAGTTGACGGATGGCTCAAATTCTAATC
TGTTCCATTACCTAGCGCGATCATCGATTTACACCAATGTTTTGTATGAG
CGATATCAAACCATTGACAAAGAAATGATGAGCATCTCAATAAAAATCGC
TGAACTTTTGTTAAAGGCGGGCGTTGATATCAACGGAGTGAGTGATGAGG
GCGTTACACCCTTAATTGCTGCAGTTGCTAATGAGAACTTTCCACTGACT
GATTTTCTTCTTGAGAATGGCGCATCTGCCACTGTTGGGAAAACGGAAGA
TGATAATAAAACTGTATTACATTTCATCGACCAAAACTATGACAAAGACC
TGTCTGCTTATGTGGTGGATAAATCTTTCACATCAAAGTCAAACGAGGAA
TCGGAAAAACGTGGAAAGATGTACAACCATGCTCAACTTGAGCTTTTGAA
AAACCTTCTCAAGCATGGGGCAGGATGTAAACAGTATACGCAAAGACATG
CATTCGTTATTCACGTTCGCTTTATCCCAATCCTACTTAAAAATCTGTGA
GGTGATTTATTGTTAGACGCTGGTGTCGATGTGAATTTTGTTGACGAGAA
CGGCTTGACGATCCTGATGAAACATTTAACTGGAACGCTGTGTGAAGAAC
AATATACACTTGTCAAACATCTGCTAGAGAAATATCACGCCAATCCTCAG
TTGACGGATGGCTCAAATTCTAATCTGTTCCATTACCTAGCGCGATCATC
GATTTACACCAATGTTTTGTATGAGCGATATCAAACCATTGACAAAGAAA
TGATGAGCATCTCAATAAAAATCGCTGAACTTTTGTTAAAGGCGGGCGTT
GATATCAACGGAGTGAGTGATGAGGGCGTTACACCCTTAATTGCTGCAGT
TGCTAATGAGAACTTTCCACTGACTGATTTTCTTCTTGAGAATGGCGCAT
CTGCCACTGTTGGGAAAACGGAAGATGATAATAAAACTGTATTACATTTC
ATCGACCAAAACTATGACAAAGACCTGTCTGCTTATGTGGTGGATAAATC
TTTCACATCAAAGTCAAACGAGGAATCGGAAAAACGTGGAAAGATGTACA
ACCATGCTCAACTTGAGCTTTTGAAAAACCTTCTCAAGCATGGGGCAGGA
TGTAAACAGTATACGCAAAGACATGCATTCGTTATTCACGTTCGCTTTAT
CCCAATCCTACTTAAAAATCTGTGAGGTGATTTATTGTTAGACGCTGGTG
TCGATGTGAATTTTGTTGACGAGAACGGCTTGACGATCCTGATGAAACAT
TTAACTGGAACGCTGTGTGAAGAACAATATACACTTGTCAAACATCTGCT
AGAGAAATATCACGCCAATCCTCAGTTGACGGATGGCTCAAATTCTAATC
TGTTCCATTACCTAGCGCGATCATCGATTTACACCAATGTTTTGTATGAG
CGATATCAAACCATTGACAAAGAAATGATGAGCATCTCAATAAAAATCGC
TGAACTTTTGTTAAAGGCGGGCGTTGATATCAACGGAGTGAGTGATGAGG
GCGTTACACCCTTAATTGCTGCAGTTGCTAATGAGAACTTTCCACTGACT
GATTTTCTTCTTGAGAATGGCGCATCTGCCACTGTTGGGAAAACGGAAGA
TGATAATAAAACTGTATTACATTTCATCGACCAAAACTATGACAAAGACC
TGTCTGCTTATGTGGTGGATAAATCTTTCACATCAAAGTCAAACGAGGAA
TCGGAAAAACGTGGAAAGATGTACAACCATGCTCAACTTGAGCTTTTGAA
AAACCTTCTCAAGCATGGGGCAGGATGTAAACAGTATACGCAAAGACATG
CATTCGTTATTCACGTTCGCTTTATCCCAATCCTACTTAAAAATCTGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029733	XLOC_029733	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00046586-protein	TCONS_00046586-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_114	supercontig	scaffold_114:108978..113835 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26201	1.38668	1.63055	1.06114	7.70985	4.15313	6.29255	8.43383	4.68243	7.03227	6.77263	3.50088	5.47154	5.22335	3.08378	4.76194	4.02369	3.77257	4.39099	5.14858	2.89138	3.50431	2.30198	2.92065	3.94973	6.56233	1.64704	1.60368	1.97379	1.71448

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR020683	Ankyrin_rpt-contain_dom
IPR002110	Ankyrin_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00046586 vs. Swiss-Prot (Human)

BLAST of TCONS_00046586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00046586 (transcript) - C. hemisphaerica