TCONS_00046565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046565
Unique NameTCONS_00046565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046565 ID=TCONS_00046565|Name=TCONS_00046565|organism=Clytia hemisphaerica|type=transcript|length=256bp
attttctgggaaaaacctgTTCATTCGCGACGTGTCATGTTTTGAACGAG
ATGCATATAAATGTTCATGAGAAAAGTAGTCATTTCTGTTATATTCTTCA
AAGGGACAAGACATCTTCAGAATTTTCAATCAACTACTTAATACTGTTTT
TCAGGGGAAAACCCTtttaatcaaaaagaaaaaaactttgagaaGANTCA
TTCAAATCggttttctttgatttactatcattggaagcaaaaaaatccga
aatgtg
Run BLAST on NCBI

transcript from alignment at scaffold_113:191785..192040

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046565 ID=TCONS_00046565|Name=TCONS_00046565|organism=Clytia hemisphaerica|type=transcript|length=256bp|location=Sequence derived from alignment at scaffold_113:191785..192040 (Clytia hemisphaerica)
cacatttcggatttttttgcttccaatgatagtaaatcaaagaaaaccGA
TTTGAATGANTCttctcaaagtttttttctttttgattaaaAGGGTTTTC
CCCTGAAAAACAGTATTAAGTAGTTGATTGAAAATTCTGAAGATGTCTTG
TCCCTTTGAAGAATATAACAGAAATGACTACTTTTCTCATGAACATTTAT
ATGCATCTCGTTCAAAACATGACACGTCGCGAATGAAcaggtttttccca
gaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029714XLOC_029714Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046565-exon-scaffold_113-1491911889:191785..192040TCONS_00046565-exon-scaffold_113-1491911889:191785..192040Clytia hemisphaericaexon
TCONS_00046565-exon-scaffold_113-1510915933:191785..192040TCONS_00046565-exon-scaffold_113-1510915933:191785..192040Clytia hemisphaericaexon
TCONS_00046565-exon-scaffold_113-1575043694:191785..192040TCONS_00046565-exon-scaffold_113-1575043694:191785..192040Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:191785..192040 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.69794	1.40293	0	0	0	0.743757	0	5.04031	0	0.728507	1.41421	1.8593	0.928355	3.37437	1.18894	2.55183	1.04788	0.537022	3.70963	2.32911	2.69923	2.2184	0.800244	4.58288	0	0.668774	6.6991	3.06405	0.879646	0.874841
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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