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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046536 ID=TCONS_00046536|Name=TCONS_00046536|organism=Clytia hemisphaerica|type=transcript|length=2091bp cgttaattacattcgaaaatatttaaaacaaaagaagagagaaaaacaaa gggcGGGTAAGCATgagcagaaattaaaattactaaatgtagataggcct taaatttcaaaacaaaggctgaataaagtctaaaccagactctatccgat ctgtcaatcaaaacaaacttatcgagaacaaaaacattgcttgcgaaaac gaaagtggtgacacacagcaTACAGAACACGGCTATTAATATCTAGAAGA ACAACGAGAAAATGGACGCAGAGAAACTGCGAAAACGACAGTTAAAACGA GAAAGAGAGCATAAGCAGAAACATAAATCAGGGAAGAGAGAACTACCTga tgaaaaagcagaaaaacaaaTGTACGAAATGAACGTACCAGAACGTGGTG TTGTGATCTCGAATGTCAGCACGTTGTTCAATTTGGATGAAGAAATTTGC GATGTAACTGTTTTGACGTACGAATCACCTAAAGAAGTTCTGAAATTACC ATCAAAGTATGTAAACTTCATCTCAGAGAAATTAAAGACATTGGTTGCTG AAGAGACTGGAGAAATTGATGTCACTAGTCTGGATGTCTCGATAGAGAGT ATCGAGCAAGCTATCTCGTTTTATCATCCTAAAAATTCTATCAAACTGGA AGACGAGAGTCCGTTTGAAGAACTTCTGACGCTCTGTGATGAATGGAATT TGCTTGCGTTTCGAACAAGTATCGAGGAATACTTCATCGAACATCATCAA TATGGTTGCAATTATTTTGATGGAGATGTCGGTCCGGAGCATATCAAGTT ATTCTACATATTAGAGAAATTCAACTTTGGTAATATTATCAACATGTTTG TAGAAGACTGTTGCAtcagtgatgacgtcataaagaATTATAAAGAGTGT GGCTTAGAGAAACTCAGTAAAGAACTCCAATATGAAATGTTGAAAGTGGA AATTTTAGATATGTTGGAAGTGAAGTCAAACAGAAGTGAACTCCATacta ttttgaatttctttaattttctggTTCATGAAGATCGTGTCGTAGACCAA TACGCGAAAAATGGTTACAAAAAGCAAATCGAATATGGAATTTATGAAGA AATCAAACAGAGCGATTTTGAAGAGAAGAGGTTTGGTGCCGACGTGACAA TCATCGTCAGCGACACAAAATTGTACGTCAATTCTCAAATCTTGATGGAT AACTCACCAGTTTTCAAGAGGCGCCTTGAGAATCTTGGAGATAAAGAGTT GGTGCTGGAATTACCTTGGAAAAACACTAAGGAGGTCGTCCTATTCTTCA CCTTTCTTACAAAACCGTGCAAAATTGAACGCGATGTTGATTTGTACGCA TTAGCATCAATATGTCAAGAATATCAAGTCCAGTGGATCATCGATAAAAT CGGAAACTATATTTCCACAAAAGTTAAATTTGGGGGTGAAACGTACCAAT CTCTGTTAAGATTCTTAAAACTAGCTTGTATGATTAAAAAGGAAGATGTT GTTAAAAAACTGATTCAAATTTTGGATCAGCCTTTTCAATTGTTGAAAAT GACTGAGGAATTCACTTGGCTGAACACATCGGCTAAAATATTGGTGGCTC GAAAATGCCTGTTTACGTTAGCTGAGGAGTCGTTTAATGAATCTGAAGCA TCTTTACCGGCAAATCGAGTGAAATTCAATTTACTGATGAACGAAGATGG GTGTGGTTTACTGAATATACTTCAAGAGTATTCACAAATTGAGTTTGATT TCCAGAATGATAATGATGAGGAGGAAAAGgatgattgaaaatttcaaaat tttaacttttgcctttttgggcacaaacgtcttttggacgtctaatgtac gttNtttattcaaaattttaccttTTGCAAAAGGTACACTGTACAGTGGA TGAAAATTAGTTGAAACTTTTCTGGGTGGTGAGCCCATAAATTTTCttaa gatatttttattttattttctgtatTTCTTGGTATTTTGGTACAAagtct taaatgttcttattatgTTCTGAAATTTTTAGCTTCAATACTTTGTTCTT ATTAGAATAAACATATGAGTGTTTTAACAACTAAGTGTTTG Run BLAST on NCBI protein sequence of TCONS_00046536-protein >TCONS_00046536-protein ID=TCONS_00046536-protein|Name=TCONS_00046536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bp
MDAEKLRKRQLKREREHKQKHKSGKRELPDEKAEKQMYEMNVPERGVVIS NVSTLFNLDEEICDVTVLTYESPKEVLKLPSKYVNFISEKLKTLVAEETG EIDVTSLDVSIESIEQAISFYHPKNSIKLEDESPFEELLTLCDEWNLLAF RTSIEEYFIEHHQYGCNYFDGDVGPEHIKLFYILEKFNFGNIINMFVEDC CISDDVIKNYKECGLEKLSKELQYEMLKVEILDMLEVKSNRSELHTILNF FNFLVHEDRVVDQYAKNGYKKQIEYGIYEEIKQSDFEEKRFGADVTIIVS DTKLYVNSQILMDNSPVFKRRLENLGDKELVLELPWKNTKEVVLFFTFLT KPCKIERDVDLYALASICQEYQVQWIIDKIGNYISTKVKFGGETYQSLLR FLKLACMIKKEDVVKKLIQILDQPFQLLKMTEEFTWLNTSAKILVARKCL FTLAEESFNESEASLPANRVKFNLLMNEDGCGLLNILQEYSQIEFDFQND NDEEEKDD Run BLAST on NCBI transcript from alignment at scaffold_113:262917..265397- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046536 ID=TCONS_00046536|Name=TCONS_00046536|organism=Clytia hemisphaerica|type=transcript|length=2481bp|location=Sequence derived from alignment at scaffold_113:262917..265397- (Clytia hemisphaerica) CGTTAATTACATTCGAAAATATTTAAAACAAAAGAAGAGAGAAAAACAAA
GGGCGGGTAAGCATGAGCAGAAATTAAAATTACTAAATGTAGATAGGCCT
TAAATTTCAAAACAAAGGCTGAATAAAGTCTAAACCAGACTCTATCCGAT
CTGTCAATCAAAACAAACTTATCGAGAACAAAAACATTGCTTGCGAAAAC
GAAAGTGGTGACACACAGCATACAGAACACGGCTATTAATATCTAGAAGA
ACAACGAGAAAATGGACGCAGAGAAACTGCGAAAACGACAGTTAAAACGA
GAAAGAGAGCATAAGCAGAAACATAAATCAGGGAAGAGAGAACTACCTGA
TGAAAAAGCAGAAAAACAAATGTACGAAATGAACGTACCAGAACGTGGTG
TTGTGATCTCGAATGTCAGCACGTTGTTCAATTTGGATGAAGAAATTTGC
GATGTAACTGTTTTGACGTACGAATCACCTAAAGAAGTTCTGAAATTACC
ATCAAAGTATGTAAACTTCATCTCAGAGAAATTAAAGACATTGGTTGCTG
AAGAGACTGGAGAAATTGATGTCACTAGTCTGGATGTCTCGATAGAGAGT
ATCGAGCAAGCTATCTCGTTTTATCATCCTAAAAATTCTATCAAACTGGA
AGGTAACACAGTTGTTCTCTTGATAAAAGATGTCCAAAGTCTACGTGAAT
CAAAATGAATATTTTAAAATCTTTGAACTGGTGAGCCTTAAGTTCATTTT
TCAAACCTATTCTAATGGTTCCTACTTACATTTACTACTTTAAATTGACG
AATAGATCTTCGGCAATTTCCTCTCAGAAGGCATAAATTTGTATATAAAA
TGTATAATTTCCGTTTTAGACGAGAGTCCGTTTGAAGAACTTCTGACGCT
CTGTGATGAATGGAATTTGCTTGCGTTTCGAACAAGTATCGAGGAATACT
TCATCGAACATCATCAATATGGTTGCAATTATTTTGATGGAGATGTCGGT
CCGGAGCATATCAAGTTATTCTACATATTAGAGAAATTCAACTTTGGTAA
TATTATCAACATGTTTGTAGAAGACTGTTGCATCAGTGATGACGTCATAA
AGAATTATAAAGAGTGTGGCTTAGAGAAACTCAGTAAAGAACTCCAATAT
GAAATGTTGAAAGTGGAAATTTTAGATATGTTGGAAGTGAAGTCAAACAG
AAGTGAACTCCATACTATTTTGAATTTCTTTAATTTTCTGGTTCATGAAG
ATCGTGTCGTAGACCAATACGCGAAAAATGGTTACAAAAAGCAAATCGAA
TATGGAATTTATGAAGAAATCAAACAGAGCGATTTTGAAGAGAAGAGGTT
TGGTGCCGACGTGACAATCATCGTCAGCGACACAAAATTGTACGTCAATT
CTCAAATCTTGATGGATAACTCACCAGTTTTCAAGAGGCGCCTTGAGAAT
CTTGGAGATAAAGAGTTGGTGCTGGAATTACCTTGGAAAAACACTAAGGA
GGTCGTCCTATTCTTCACCTTTCTTACAAAACCGTGCAAAATTGAACGTA
AGTGACAGAACTCTTTTTTATTTCGAGATTCTGAAAATGTGTTACTTTTT
TTCTTAGAATGCTATTTTAGCCATTATTTAATTAAAAAAATCATCAAAAT
GAAATCGAGAATTTTCACGATTTTGATTCTCGTTTTGACATTAATTTTGT
GCAATTGATGTCATTTTTAGGCGATGTTGATTTGTACGCATTAGCATCAA
TATGTCAAGAATATCAAGTCCAGTGGATCATCGATAAAATCGGAAACTAT
ATTTCCACAAAAGTTAAATTTGGGGGTGAAACGTACCAATCTCTGTTAAG
ATTCTTAAAACTAGCTTGTATGATTAAAAAGGAAGATGTTGTTAAAAAAC
TGATTCAAATTTTGGATCAGCCTTTTCAATTGTTGAAAATGACTGAGGAA
TTCACTTGGCTGAACACATCGGCTAAAATATTGGTGGCTCGAAAATGCCT
GTTTACGTTAGCTGAGGAGTCGTTTAATGAATCTGAAGCATCTTTACCGG
CAAATCGAGTGAAATTCAATTTACTGATGAACGAAGATGGGTGTGGTTTA
CTGAATATACTTCAAGAGTATTCACAAATTGAGTTTGATTTCCAGAATGA
TAATGATGAGGAGGAAAAGGATGATTGAAAATTTCAAAATTTTAACTTTT
GCCTTTTTGGGCACAAACGTCTTTTGGACGTCTAATGTACGTTNTTTATT
CAAAATTTTACCTTTTGCAAAAGGTACACTGTACAGTGGATGAAAATTAG
TTGAAACTTTTCTGGGTGGTGAGCCCATAAATTTTCTTAAGATATTTTTA
TTTTATTTTCTGTATTTCTTGGTATTTTGGTACAAAGTCTTAAATGTTCT
TATTATGTTCTGAAATTTTTAGCTTCAATACTTTGTTCTTATTAGAATAA
ACATATGAGTGTTTTAACAACTAAGTGTTTG Coding sequence (CDS) from alignment at scaffold_113:262917..265397- >TCONS_00046536 ID=TCONS_00046536|Name=TCONS_00046536|organism=Clytia hemisphaerica|type=CDS|length=4581bp|location=Sequence derived from alignment at scaffold_113:262917..265397- (Clytia hemisphaerica) GCGATGTTGATTTGTACGCATTAGCATCAATATGTCAAGAATATCAAGTC CAGTGGATCATCGATAAAATCGGAAACTATATTTCCACAAAAGTTAAATT TGGGGGTGAAACGTACCAATCTCTGTTAAGATTCTTAAAACTAGCTTGTA TGATTAAAAAGGAAGATGTTGTTAAAAAACTGATTCAAATTTTGGATCAG CCTTTTCAATTGTTGAAAATGACTGAGGAATTCACTTGGCTGAACACATC GGCTAAAATATTGGTGGCTCGAAAATGCCTGTTTACGTTAGCTGAGGAGT CGTTTAATGAATCTGAAGCATCTTTACCGGCAAATCGAGTGAAATTCAAT TTACTGATGAACGAAGATGGGTGTGGTTTACTGAATATACTTCAAGAGTA TTCACAAATTGAGTTTGATTTCCAGAATGATAATGATGAGGAGGAAAAGG ATGATTGAACGAGAGTCCGTTTGAAGAACTTCTGACGCTCTGTGATGAAT GGAATTTGCTTGCGTTTCGAACAAGTATCGAGGAATACTTCATCGAACAT CATCAATATGGTTGCAATTATTTTGATGGAGATGTCGGTCCGGAGCATAT CAAGTTATTCTACATATTAGAGAAATTCAACTTTGGTAATATTATCAACA TGTTTGTAGAAGACTGTTGCATCAGTGATGACGTCATAAAGAATTATAAA GAGTGTGGCTTAGAGAAACTCAGTAAAGAACTCCAATATGAAATGTTGAA AGTGGAAATTTTAGATATGTTGGAAGTGAAGTCAAACAGAAGTGAACTCC ATACTATTTTGAATTTCTTTAATTTTCTGGTTCATGAAGATCGTGTCGTA GACCAATACGCGAAAAATGGTTACAAAAAGCAAATCGAATATGGAATTTA TGAAGAAATCAAACAGAGCGATTTTGAAGAGAAGAGGTTTGGTGCCGACG TGACAATCATCGTCAGCGACACAAAATTGTACGTCAATTCTCAAATCTTG ATGGATAACTCACCAGTTTTCAAGAGGCGCCTTGAGAATCTTGGAGATAA AGAGTTGGTGCTGGAATTACCTTGGAAAAACACTAAGGAGGTCGTCCTAT TCTTCACCTTTCTTACAAAACCGTGCAAAATTGAACATGGACGCAGAGAA ACTGCGAAAACGACAGTTAAAACGAGAAAGAGAGCATAAGCAGAAACATA AATCAGGGAAGAGAGAACTACCTGATGAAAAAGCAGAAAAACAAATGTAC GAAATGAACGTACCAGAACGTGGTGTTGTGATCTCGAATGTCAGCACGTT GTTCAATTTGGATGAAGAAATTTGCGATGTAACTGTTTTGACGTACGAAT CACCTAAAGAAGTTCTGAAATTACCATCAAAGTATGTAAACTTCATCTCA GAGAAATTAAAGACATTGGTTGCTGAAGAGACTGGAGAAATTGATGTCAC TAGTCTGGATGTCTCGATAGAGAGTATCGAGCAAGCTATCTCGTTTTATC ATCCTAAAAATTCTATCAAACTGGAAGGCGATGTTGATTTGTACGCATTA GCATCAATATGTCAAGAATATCAAGTCCAGTGGATCATCGATAAAATCGG AAACTATATTTCCACAAAAGTTAAATTTGGGGGTGAAACGTACCAATCTC TGTTAAGATTCTTAAAACTAGCTTGTATGATTAAAAAGGAAGATGTTGTT AAAAAACTGATTCAAATTTTGGATCAGCCTTTTCAATTGTTGAAAATGAC TGAGGAATTCACTTGGCTGAACACATCGGCTAAAATATTGGTGGCTCGAA AATGCCTGTTTACGTTAGCTGAGGAGTCGTTTAATGAATCTGAAGCATCT TTACCGGCAAATCGAGTGAAATTCAATTTACTGATGAACGAAGATGGGTG TGGTTTACTGAATATACTTCAAGAGTATTCACAAATTGAGTTTGATTTCC AGAATGATAATGATGAGGAGGAAAAGGATGATTGAACGAGAGTCCGTTTG AAGAACTTCTGACGCTCTGTGATGAATGGAATTTGCTTGCGTTTCGAACA AGTATCGAGGAATACTTCATCGAACATCATCAATATGGTTGCAATTATTT TGATGGAGATGTCGGTCCGGAGCATATCAAGTTATTCTACATATTAGAGA AATTCAACTTTGGTAATATTATCAACATGTTTGTAGAAGACTGTTGCATC AGTGATGACGTCATAAAGAATTATAAAGAGTGTGGCTTAGAGAAACTCAG TAAAGAACTCCAATATGAAATGTTGAAAGTGGAAATTTTAGATATGTTGG AAGTGAAGTCAAACAGAAGTGAACTCCATACTATTTTGAATTTCTTTAAT TTTCTGGTTCATGAAGATCGTGTCGTAGACCAATACGCGAAAAATGGTTA CAAAAAGCAAATCGAATATGGAATTTATGAAGAAATCAAACAGAGCGATT TTGAAGAGAAGAGGTTTGGTGCCGACGTGACAATCATCGTCAGCGACACA AAATTGTACGTCAATTCTCAAATCTTGATGGATAACTCACCAGTTTTCAA GAGGCGCCTTGAGAATCTTGGAGATAAAGAGTTGGTGCTGGAATTACCTT GGAAAAACACTAAGGAGGTCGTCCTATTCTTCACCTTTCTTACAAAACCG TGCAAAATTGAACATGGACGCAGAGAAACTGCGAAAACGACAGTTAAAAC GAGAAAGAGAGCATAAGCAGAAACATAAATCAGGGAAGAGAGAACTACCT GATGAAAAAGCAGAAAAACAAATGTACGAAATGAACGTACCAGAACGTGG TGTTGTGATCTCGAATGTCAGCACGTTGTTCAATTTGGATGAAGAAATTT GCGATGTAACTGTTTTGACGTACGAATCACCTAAAGAAGTTCTGAAATTA CCATCAAAGTATGTAAACTTCATCTCAGAGAAATTAAAGACATTGGTTGC TGAAGAGACTGGAGAAATTGATGTCACTAGTCTGGATGTCTCGATAGAGA GTATCGAGCAAGCTATCTCGTTTTATCATCCTAAAAATTCTATCAAACTG GAAGGCGATGTTGATTTGTACGCATTAGCATCAATATGTCAAGAATATCA AGTCCAGTGGATCATCGATAAAATCGGAAACTATATTTCCACAAAAGTTA AATTTGGGGGTGAAACGTACCAATCTCTGTTAAGATTCTTAAAACTAGCT TGTATGATTAAAAAGGAAGATGTTGTTAAAAAACTGATTCAAATTTTGGA TCAGCCTTTTCAATTGTTGAAAATGACTGAGGAATTCACTTGGCTGAACA CATCGGCTAAAATATTGGTGGCTCGAAAATGCCTGTTTACGTTAGCTGAG GAGTCGTTTAATGAATCTGAAGCATCTTTACCGGCAAATCGAGTGAAATT CAATTTACTGATGAACGAAGATGGGTGTGGTTTACTGAATATACTTCAAG AGTATTCACAAATTGAGTTTGATTTCCAGAATGATAATGATGAGGAGGAA AAGGATGATTGAACGAGAGTCCGTTTGAAGAACTTCTGACGCTCTGTGAT GAATGGAATTTGCTTGCGTTTCGAACAAGTATCGAGGAATACTTCATCGA ACATCATCAATATGGTTGCAATTATTTTGATGGAGATGTCGGTCCGGAGC ATATCAAGTTATTCTACATATTAGAGAAATTCAACTTTGGTAATATTATC AACATGTTTGTAGAAGACTGTTGCATCAGTGATGACGTCATAAAGAATTA TAAAGAGTGTGGCTTAGAGAAACTCAGTAAAGAACTCCAATATGAAATGT TGAAAGTGGAAATTTTAGATATGTTGGAAGTGAAGTCAAACAGAAGTGAA CTCCATACTATTTTGAATTTCTTTAATTTTCTGGTTCATGAAGATCGTGT CGTAGACCAATACGCGAAAAATGGTTACAAAAAGCAAATCGAATATGGAA TTTATGAAGAAATCAAACAGAGCGATTTTGAAGAGAAGAGGTTTGGTGCC GACGTGACAATCATCGTCAGCGACACAAAATTGTACGTCAATTCTCAAAT CTTGATGGATAACTCACCAGTTTTCAAGAGGCGCCTTGAGAATCTTGGAG ATAAAGAGTTGGTGCTGGAATTACCTTGGAAAAACACTAAGGAGGTCGTC CTATTCTTCACCTTTCTTACAAAACCGTGCAAAATTGAACATGGACGCAG AGAAACTGCGAAAACGACAGTTAAAACGAGAAAGAGAGCATAAGCAGAAA CATAAATCAGGGAAGAGAGAACTACCTGATGAAAAAGCAGAAAAACAAAT GTACGAAATGAACGTACCAGAACGTGGTGTTGTGATCTCGAATGTCAGCA CGTTGTTCAATTTGGATGAAGAAATTTGCGATGTAACTGTTTTGACGTAC GAATCACCTAAAGAAGTTCTGAAATTACCATCAAAGTATGTAAACTTCAT CTCAGAGAAATTAAAGACATTGGTTGCTGAAGAGACTGGAGAAATTGATG TCACTAGTCTGGATGTCTCGATAGAGAGTATCGAGCAAGCTATCTCGTTT TATCATCCTAAAAATTCTATCAAACTGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00046536-exon-scaffold_113-1575043694:264746..265397 | TCONS_00046536-exon-scaffold_113-1575043694:264746..265397 | Clytia hemisphaerica | exon |
TCONS_00046536-exon-scaffold_113-1575043694:263851..264528 | TCONS_00046536-exon-scaffold_113-1575043694:263851..264528 | Clytia hemisphaerica | exon |
TCONS_00046536-exon-scaffold_113-1575043694:262917..263677 | TCONS_00046536-exon-scaffold_113-1575043694:262917..263677 | Clytia hemisphaerica | exon |
TCONS_00046536-exon-scaffold_113-1510915933:264746..265397 | TCONS_00046536-exon-scaffold_113-1510915933:264746..265397 | Clytia hemisphaerica | exon |
TCONS_00046536-exon-scaffold_113-1510915933:263851..264528 | TCONS_00046536-exon-scaffold_113-1510915933:263851..264528 | Clytia hemisphaerica | exon |
TCONS_00046536-exon-scaffold_113-1510915933:262917..263677 | TCONS_00046536-exon-scaffold_113-1510915933:262917..263677 | Clytia hemisphaerica | exon |
TCONS_00046536-exon-scaffold_113-1491911889:264746..265397 | TCONS_00046536-exon-scaffold_113-1491911889:264746..265397 | Clytia hemisphaerica | exon |
TCONS_00046536-exon-scaffold_113-1491911889:263851..264528 | TCONS_00046536-exon-scaffold_113-1491911889:263851..264528 | Clytia hemisphaerica | exon |
TCONS_00046536-exon-scaffold_113-1491911889:262917..263677 | TCONS_00046536-exon-scaffold_113-1491911889:262917..263677 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_113 | supercontig | scaffold_113:262917..265397 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|