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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046523 ID=TCONS_00046523|Name=TCONS_00046523|organism=Clytia hemisphaerica|type=transcript|length=335bp
CCTGTCCtggaatgaaatgaaaatatcatACCTTTGGAAAATTCATCATT
ATCAACTACGAATTTCAGAATATCTTCACGATCTGCACAAGTGGATTCAT
CAATATTCACTCCTTTTGTATCACAATTTTTGGTAAGACCTCTTTGTTGT
TTAAGTACTGTAGAAGTGGTTCCTTGATGACTTTCTAAAACCCACCAAGC
TGGTCCGAGAATCCCAGCGATGATTCCAGCAATCCCGATTATATATCCGA
TAATTGAGATTCCCAATAACACAAATGCTCCACTCGACCCCAtgattttg
tgtttgtttttgtgtttgttttttctCTCAGTTGG Run BLAST on NCBI transcript from alignment at scaffold_113:132562..141386- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046523 ID=TCONS_00046523|Name=TCONS_00046523|organism=Clytia hemisphaerica|type=transcript|length=8825bp|location=Sequence derived from alignment at scaffold_113:132562..141386- (Clytia hemisphaerica)
CCTGTCCTGGAATGAAATGAAAATATCATACCTTTGGAAAATTCATCATT
ATCAACTACGAATTTCAGAATATCTTCACGATCTGCACAAGTGGATTCAT
CAATATTCACTCCTTTTGTATCACAATTTTTGGTAAGACCTCTTTGTTGT
TTAAGTACTGTAGAAGTGGTTCCTTGATGACTTTCTAAAACCCACCAAGC
TGGTCCGAGAATCCCAGCGATGATTCCAGCAATCCCGATTATATATCCGA
TAATTGAGATTCCCAATAACACAAATGCTCCACTCGACCCCATGATTTTG
TGTTTGTTTTTGTGTTTGTTTTTTCTATGAATAAGTAGAGAAAAGTTATG
ATAATGCTCTTTATTACATAATACAATATCAATGAGGCTCAAAACACCAA
AAATTTGAATAGAATATACAGAATAGACTTGCTAGAACTAAACTACTAGG
CATAAGCTATTGAGATCGAAAAAGATTTTAAGTACATTTTAAAACATATT
AAGATTAGACGGAGACTAGATCATACAATCTCTTGGGGAAAATGTTTCTG
ACGGAAATGAAAGAAAGGTGCCAAGTGGTAAAACTTCAAATCAATTCGCT
AGATGACAGAATAAAGTAAAGCAGGGCCAAACTTGCAGGTTCTTGGATCA
CACGTTGATCAAAAATGGTCAAAAAACGGTCAAAATCTTTAAAAAATGAA
TTTTTGACAAATTTTTGCATTTTTTACTTTTTAGCATAAATTCTCGCTGG
AAAAACTCACTCTTAAATTTTTTATTGCTTGACCAAAGAGGCCAATCCAA
TTTCTACTAATTAGACCAAAAATGACGAATGTCCGATATACCCGCACTTA
AAAGATTAAGTAAGACTAGAAGTAAGACTAATAGCATACATTCTTTGAAC
TTTCAGCATTATGGATTTTAATATGTGTAATTTTTTCAAGAAATCAAGCT
GCAGAACAGACTTCGTAACCAAATACTAAGAACAAATTAAGAACATTTTA
CCAAAGCTTTGCTGAATCTAAAACACTCAATTTCTTAGGAAATTAAGCCA
ATTAAGCTGTAGTTTTCAGAAGGGAGGACAAAAGAAGATTTTTAAGACAA
ATTTTAGACTCACAAACCTAAAAAACATCCGGAAGCTTTTGCTCTTTCTT
ATAAAAAAAACATGTATCTGGATGGGAAAAATGCTTTTCCATGAGAATTG
ACGAAAGAAATTCACAGGTATTCGTATTACAGTCTAGAAAAAAAGAAAGT
TTAGGAGGATAAAAAGTCAGACGTTATTTTGATGGCAGTTTCAAGTTTTC
AAGTTTCAATTCTGCCGAACAAATATACGATAAACATACAAAAATACAAC
CAGTACAGCTCAAGCTCAAAACTATAGACCAACTTACTGTAAAAGGGTCA
AAGAATCAAAAAAGTCAAAAAATCAGATATACAAACAAAAATACTCTTGC
CCAAAATATAAGAACAACATAAGAACAGTTCGAGGCTCAAAGTGAAAAAA
AATAAGAACAGTGTAGCCTTAAAAATAATTTATTGGTTTTTATAAAAAAA
AGTGTAAAAGAAACCATGAACATCATGAAGAAACTTGCAAAAGTTCAACA
CCAATGCCAAAACTTTCTCTCAACAACGGCATAAGATACTACACTGATCT
TACATGATTCAATTTAATTAACGACCACTCATTTAACTCATTATTTTATT
CATGTTAGCAAATTGTTCACTAATGATGTCATTAACGATGAAAAAGTTTA
AATGTAATTACATTTTGTGTTTTTCATTGATACAAGTTCCCCACCTGACA
TAAATCCGCAACAGTCAGCAAAATAGAAACAAAACAAAAACAATATTCTT
CAATAAAAATGTTTGCTTCACTTCATCTTCCTTAACTTTTCTTTCACAAT
GAAAAGAGAATAACGATATAACTATTCAACTTTGCTTGAAACTTTCATGT
ACTTTTTTTGTGGCGATACAGTAAACAAGTTACATGAAAGTTTGTGACAA
AAATTGGATGTTTTTTTATACCACTCCCTTTTTTTGAGTGATAGACTAAG
GCAGATTTTCTGAAGATGAATTTTGAATCTTTTTCTCCCAATTCTACTTT
AATTCTAGTTTATCCGTAAAACTTCTAACTACCACATACACAAAAAGCTC
TTTCTCAATTTCGAAACATCGTAAATAACAGAAAATAAACTTCACAAATA
TGAATCAAACAAATTATAAGCCCTTTTTCAAAAAGAGTTTAAGGTGTAAA
ACCAATATACTCCAACACATTTAGCAAATATTTTCATATGTCCTTCATGA
TAGAGACTTCCTAAAACTTACAATTTCATTTAGAACAACTGTCCAGCATT
TCATCCTTTTTCATCTTCGAAAATTCAAAATAAAAACAAGTCGACAAATA
CTTCTCATTTTCACTTACGTTGGAAAAGAACTTTTACCTTATAACAATCA
TTACTACAGTATATAGAGAGCCTTCAAAACTCATAAATGTTTTTATTGTA
GAGCAGAGTATTAAAGTAAAGCAAAAGTTTTTTTATAGTATACGTAAGAA
ATAATATATGATAAATAAATAAGAAATGTTCGTATTATGATATGAAAGCG
ACCTGCAGATAATAAGTAAAGCATTTAAAAGACGTCCTTCTTTTAAACTA
AAAGATTATGAATGATAAGCGAATTCATAGCTTGATTCTCTGTTCATATA
ACTATTTACTACACCTTCCTTTAAAAAAGTACGTCACTTTGTCCTACCCT
ACTTTATAAACAGGCCAGTTTCCTTTTGTAAACCTTAGAAAGTCATTTTA
CAATAAAACTGTGCCAACATTTATGTCTTTGACTCTTGTCTGAAAGTCAT
AACATGTTATAGAAGCAGCATATTTTTTTAGTACATAAGCGTTACAAAAC
AAAATCTCTTTTCAACGAAATTCAAATTTGACTATTTTTTTAAAAACTAT
GTAAGTATTTTCTAATCTTGTGACATTATTGTTGTATTTGTCATGTATAA
TATGACACTTCAAATATTTGTTCTATGTCATGAAAATTGTACGTACACGA
AAATAGTACGACACCAAGATACTTCCAATACTAATAAGTCTTTCTCTTAT
ACTGCCAACTTTACAGTAAGTCTGTTTTCTTTCACTGTAATTTCAACCGT
TATCAATGAATCTTTTCGCAATGAGGACTTTTTATAAGAACATCGAGAAT
CTAATTAGTATGTTCTTAAATGAATTGTTATTCTCAGATAAATAGGCACT
AGAACACTGTTTGACTTCTTTTAATGAGTAGATGATTTTTCTAACAGTTT
CCGTGATTTAACAAGACTAAGTGAAAGTACCTTTCAATGGCTAAGGTTAA
ATGCAGATTTTCACACCAAATTACAATGCACCTACCTACTAAGCGCTACT
AACATCTTAATATGTTCTTATAAACAATAGAATTGGGGTTGTAAGACATT
TGATATGTGTTAGATTATTTTCGCATTACGAAGCTGTTTGATGAGTCAAC
ATAGACAATGTATGTAATTACATCCGCGTTTTTTCTTCTATTAATTAATA
CCAATTTCTAAATATACGATAAGATTTCAAAAATATTTCTAAATGTATCG
AAATTTTTGAGGAAGTGATACTTGCAAGTCACCTAACATACTTTAAGATT
TGAGATTTTGTCTTCTGATGATTGATGAATGGGCCTCCAACGGTTTGCGT
GAATGCGTGAATGGGCTTTTTCGGTTGCGTGAACAGTGAAAATAGACGTC
GTTCATAATCAATCAGCCAAAAAACAATGGTACTTATCATTTACACACCG
TAGCACTAGTACGGGATCATACCACAGATATCTTAAATGAAACACTAGAT
AGAGCTACTCCGTCCCTATTTGAATCAAAATAATCCCCTATCTTTGATAA
GTAGACCATAGTTCGGTGCCGATAATTTGATTGATGAAGCCTTTGATTGA
TGAATCCCTGCCATCTTTGATAAGTAGATCATAGTTCGAAGCCTATCTTG
CGCTTCGTGGCTTCGCGTCATTCAGGTTTAATTGCTTGGTTGAACAAATT
GCCGGTGCCGAACTGTGACCTACTATGATCTACTTTAAGCAACGATGACG
CATTATTTTGCTTCACCTGCTGTTGCTTGGGATATACATAGTAGCTCTAT
CTAGTGTCTTATATAAATGAATATAAAAAACACAGTAGTGTACACTAGTA
GTACACTACTGTGTTTTTTATGTTCATTTATAAGTTTTAGCACAAATATA
AATTGACTTTTACGGTCACTTAGTGTTTTATATAAGATATCTATGGATCA
TACATCTACGATGTCTGTCGCAGAATCCTGTCAGACCCACATGAAAATTC
GGCAACGAAACATCTCTAGTGAGAGAGACAAGAAGCCAAAGCCTTAGGAA
GGCCTGCAGGACATAGCAATAGTCAAATGTTTGTTCACAATGCGCACATT
TTGTACAAGAAGGTGTTGTTTCTTCAAAAACGGACATCAAGACGGTTGAC
ATGCTAATGAAACGACCGATGTGAGGCAAAAAGTGCTATGAAAATTTAAT
TTAATGTTACACTTAACCAACCCACTTGAAAAGAGACTGAATATTTTGAG
AATCCCGACTGGATTTTTTAGCTTTAAGATTTTTGAAATTCCCACCCCCT
CCCCCATTCAAGGCAAACGTTTTCATCCGGACCGTGCTATTTGAAGGTCT
ACTGCTCATTTCGCAATTTTTCCGGAATCAATTTTTCAAATGATGGTAAA
GTAAAAAAACAAAACAAATGGAAGATGTAAATTTTTAAAATTTATATAAA
AAAACATTACAAATAATTAAAAATTCAAAAAATAAGATTGTTATAAAAGT
TTATTTTTCCTTTACCGAAAATTTATTGACCTCAAAAAGAATTGTCGGGA
ATTTTGAAGAATGGCATTAGATATTTATTGGATGTTCGATTTAAATTCGT
AACATTTTGAATATTTTTAAAAATCTTACACATTGCATCAAAATTATTTA
TTCGTGATTACTCTTTAATAAAATTAGAATCAGAATTTCAATTTGGTTCA
AGAGTCATGAGGCTGAAAAGGATTTTCGGCAAGATTTTAGCAGCATTTTT
ATTCTTTGTTAGAACGAGATCGAAAGAACAAGTTTATCGGTACTTAGAGA
TTGCCATATTTCTTTTTGTTGTGATCGTCAATTTGANGATCGAAAGAACA
AGTTTATCTGTACTTAGAGATTGCCATATTTCTTTTTGTTGTGATCATCA
ATTTGGGTTTTATTTTGGGAGGTTTCAAAGGTATATTTCTTTCCTTCTTT
TGTAATTTTGCAACTAGTTTTCGATGGTTTCCCTTCGGCAAAACAACAAA
CAATAAGAATCTTGATCAACCCTTCTATTGCAAGGTGTAGTTTGTTGTAC
CACCTTGACGGTAGCTTCCAGAGCGAGTGAGACTTTTACCTTGCACCTGG
TGTAGAAGCTTTCCTCTGGCAGTCTTAAGTTCTGAAGGTCATGAAAAATT
TCAGCAACGGCAAGGTTTGGATTACAGTATACTCGCGTGCCATGCAGTTT
AGAACGACTTCGAGGCTTAAACTCAATGATAGGACCTTTTCTCTACTAGT
CAGCCTCTGTATCACTTTTTTTTTAGGACTCGCCAGCGATGGAAAAGAGA
CGAAGAATCCACAGAAAGCAATCGGTGATAGTATTGGTAATCGTAAGTAA
AAAGATCCTGAGTATTCACGTTGTAGTCCTCGTATGAGAATTTTATGAAA
GAAACAAGTCATAGTAATTTTCTCCTGTCAAAGCAGGTCAAAGTTTTATT
TATACTACAGTCTACTTCTGGCTGAACTTTCTTTTTTGACAATTTTTTGA
TGACTCTGAGTCAAGTGAATTAATCTTAGTATCATCCAGTCTATCAAAAA
AGGTCAGCTTGGATGAATCAATTTACTGTTCTTTCTTTTCCAGCCACTAA
TTCATCTTTCGAAGTGGAAATCACAAAGCAAGGGAGAAGTCAGGTGGTAA
AAAGTCTCAGTGATGTCGTATCAAGCGCGAGAGCTCACCTCAAGGCGCTC
AAAAAACCAGGTAGATTAAAATATTTGTAAGCTATTCATGATATGCACCA
TTGCAATGTCTTCTAACATTACATCACGGACCCAACAGCTCATTGGTTGT
AACTGACGTATTGGCTGATTTTACGTCACTTACAACCAATGAGCTGTTGG
GTCTATGGTGAGATGTTGAAGACATTGCAGTGATGTATATCATGAATTAT
AGGCACTTATTTATTACGTCTTCGAAAGTTTTCGAGTAATTTGGGGTAGG
CTACTAGCATACCTTCGATTGGTTTTGTCATGAGGTGTGCAAATTTCAGC
GAGAAAGGATATTATTGTTAAGAACATCATGAATTGACAATTGCATTCCT
CCTGCGACGACACAAGATAAATCAAAAGATACAAACTTCAAAAAACTTGC
TTGGACTTGTTTTTCAAGTATTATCTCTTATAACAAAAAAGTACGCAAAA
TAGTAATTAATTATAGGGGACAAATTATTTCGGAAAACCACCTAAGTTCA
ACAGCAACTACTTTTTATCAACATTTTAGCCTTTGGAGACATTCGTAATA
TGGAGCGCTTTTACGGTAAATCAACATTAGTTCTTGGCAAACGGAGACCT
TCTAACGAGAAAGGTAAGAATTTATTTACTTTGTGTTTGTAATAACACAA
TCTCGTAGCCAGCGCCACTTGCAACAAACACAATATCGTAGGCAGCGCCA
CTTGCAACACCACCTTTTACTGATGGTCGTGATACAATCGTGAGCCTTAT
CAGATTATCAAAAAGAGAACTAAGAGGCTGGGTTAGAAATTGGCGATTGT
ATACGGAAGAAAATGCTTTTTAAAGTATCATTCATACGAGAAATTGTAAT
GAACTATTTTGAGCAATGTAAGCTGGTCAAAGATCCTTTCTATGCTTGGC
GAATGCCTTGTTTGATAGTGTGTTTATACATCATTTCTTGAAATATTTTA
TGAAGACAGAGCTATATACAATGTGGGGGATTTGAATAAAAAACTAGTGT
ATATGTATAAGAATATTTCATTTCCTACATAAGTTGCGCGTGGTTTTCAT
ACAAACGCTGGAAGTAACATTTACCATCAGAACTTGTAAAAAGATGTAAA
CGCGAAAACAAAACAAAAAGTACTGGATTCAATCCGCCATTCGGAATGCA
GCGCATAGTTTAAGGCTTTATTTTCCTTGTATGGGAAAGATTGAAGCTTT
GCCTCTAGCCTTCTGCTTTAAATTCAATGCCTAAAGGTTGACAAATAACT
AATGATATCTTTCTTTTCAGCATTTTTAGTGTTCGGAATACCAACAGTGA
AACGTAGCCATGCTTATTACCTAATGGATACTCTCCGCTCCTTAATGTCA
CGAGCGCCGGATGATGTCAAAAAACGTAAAGAAATCTTAATCATTATTTT
GGTAGCAGATCAACGAAAGGATTACCTGAGGCAAGTCACTATGGATGTCA
ACAGTGAATACGAAACGGAAGTCAAGAATGGTTTGATTCAGGTAATAGTA
CCAAATGAAAGCTTCTATCCAAACATGTTCAATTTACCACAACTGTATGG
AGATGACCAGAGACGTGTTTATTGGCGTTCCAAACAATCTCTAGATTACT
CATTCTTGTATTACTATTGTAAAGAATTGGGTGAATATTTTGTGCAACTA
GAAGATGACGTCATAGCAGCCAGTCAATACTATAGGAAAATGAGAGCTTT
CATAAAGAAGAATGAGTATAATAATTGGTCAGTGTTGGAATTTGGATCTC
AAGGTTTCATTGGAATGACATATCGTACCAAACACCTGAAAACCTTATCC
AAATTCATTCGATTCTTTTATTGGACAAGACCAGTGGATTGGCTGTTCCG
CGATTATAATCAAATCTACTTAAACGGAAATCCGTCTAATTTCCGGATAA
GACCACCTGTTTTCTTACATGCCGGAAAATTCTCATCACTTGATGGGCAG
GTTCGGAAACTCGGAAGGGGTGCGAAATCAGCACAATCTCGAACCGAACG
AGAACAGTTACTTCATTGGCCAGGCCAAAGACGATATCAATCTAAAGAAG
GCAATCCACTCGCAAAAATCACTTCAACTATTGACCAGCACTTCGGAAGC
AATCGATTAAGAAATCCGTACGGTCCCAAAGGTGTATTTTGGGCTAAGGG
TGTCCATAAGAAAGACAATATAACCATTCAGTTTAACAAGACGCAGAATA
TTTCTCAAATAGTGTTCGTGAGTGGACCAGAAGGGTTTAAGAATGATCGA
TTTTATACAACCCGGTTGTTTGTTTCATATACTAAACCATCTATTGATGG
TTGTAGTGACTTCGAATCTGTGGGAGTATTTGGTACACCGATTGTTCAAT
ATAAGATTGAAGATGATGTGAAGAGACCAGTTTGGTGTGTGAGATTGATG
CTGGAGAAAGTGATTCAGAAACGATGGATTATGGTGGAAGAAATTGCTAT
CCATGTTGATAAATAGTTAGTAGAAGGGAGTTCACACCCCTGTGTCACAG
ACTCGCTGGGACCCCAGCCCACTGAAAAAAATGGCAAAAATTTCGTCCCC
GGTGGACAAAATACCGTACAATTTCAGCCCCACTGGGAAAGTGACTTTGA
TTTCATCCCCATTCGAAATTCAATGCAAAAATTTGCTGTCCAAAACCATC
CCATTTGGATATTTTATTGTTCATCGGCTTCATTATTCGTCGGCTATAAA
GAGTCTTCGGTTAAAAATTTCTACAAAAAGCGATGTTTTCGAAAACTAAA
ATGGTACATCACAAACCTCAGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046523-exon-scaffold_113-1575043694:141061..141386 | TCONS_00046523-exon-scaffold_113-1575043694:141061..141386 | Clytia hemisphaerica | exon |
| TCONS_00046523-exon-scaffold_113-1575043694:132562..132570 | TCONS_00046523-exon-scaffold_113-1575043694:132562..132570 | Clytia hemisphaerica | exon |
| TCONS_00046523-exon-scaffold_113-1510915933:141061..141386 | TCONS_00046523-exon-scaffold_113-1510915933:141061..141386 | Clytia hemisphaerica | exon |
| TCONS_00046523-exon-scaffold_113-1510915933:132562..132570 | TCONS_00046523-exon-scaffold_113-1510915933:132562..132570 | Clytia hemisphaerica | exon |
| TCONS_00046523-exon-scaffold_113-1491911889:141061..141386 | TCONS_00046523-exon-scaffold_113-1491911889:141061..141386 | Clytia hemisphaerica | exon |
| TCONS_00046523-exon-scaffold_113-1491911889:132562..132570 | TCONS_00046523-exon-scaffold_113-1491911889:132562..132570 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_113 | supercontig | scaffold_113:132562..141386 - |
Blast
The following BLAST results are available for this feature:
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