TCONS_00046498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046498
Unique NameTCONS_00046498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length156

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046498 ID=TCONS_00046498|Name=TCONS_00046498|organism=Clytia hemisphaerica|type=transcript|length=156bp
TTGTTTTGAATGTAAGGACCCAAAGTGTCTTGAACATATTCACTGATCAT
TTGGCAAACTTGAGGTGAAGTGTTCTCGTCCCATCGGTTGCCCCAGATCA
CAACACCACTTGCACCGATACCAGCCGCAAGACCAATCGTGTTGTCAAGA
TCTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_113:42768..42993+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046498 ID=TCONS_00046498|Name=TCONS_00046498|organism=Clytia hemisphaerica|type=transcript|length=226bp|location=Sequence derived from alignment at scaffold_113:42768..42993+ (Clytia hemisphaerica)
TTGTTTTGAATGTAAGGACCCAAAGTGTCTTGAACATATTCACTGATCAT
TTGGCAAACTTGAGGTGAAGTATTCTCGTCCCATCGGTTGCCCCAGATCA
CAACACCACTTGCACCGATACCAGCCNACTTGAGGTGAAGTGTTCTCGTC
CCATCGGTTGCCCCAGATCACAACACCACTTGCACCGATACCAGCCGCAA
GACCAATCGTGTTGTCAAGATCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029682XLOC_029682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046498-exon-scaffold_113-1491911889:42768..42831TCONS_00046498-exon-scaffold_113-1491911889:42768..42831Clytia hemisphaericaexon
TCONS_00046498-exon-scaffold_113-1510915933:42768..42831TCONS_00046498-exon-scaffold_113-1510915933:42768..42831Clytia hemisphaericaexon
TCONS_00046498-exon-scaffold_113-1575043694:42768..42831TCONS_00046498-exon-scaffold_113-1575043694:42768..42831Clytia hemisphaericaexon
TCONS_00046498-exon-scaffold_113-1491911889:42902..42993TCONS_00046498-exon-scaffold_113-1491911889:42902..42993Clytia hemisphaericaexon
TCONS_00046498-exon-scaffold_113-1510915933:42902..42993TCONS_00046498-exon-scaffold_113-1510915933:42902..42993Clytia hemisphaericaexon
TCONS_00046498-exon-scaffold_113-1575043694:42902..42993TCONS_00046498-exon-scaffold_113-1575043694:42902..42993Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:42768..42993 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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