TCONS_00046490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046490
Unique NameTCONS_00046490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046490 ID=TCONS_00046490|Name=TCONS_00046490|organism=Clytia hemisphaerica|type=transcript|length=1314bp
CAATGGTGAGATGAGTATGGAAGACTTCGTTTCACAATCCTATCCTCAAC
AAATGATGTCTGCAACAACACAACAAGACTTCACCCAAGACAACAATCAA
ATCGTCACAGAATCAATGTGTTACTCTCCGGACATCATAAGGTCTAATCA
GAACCAAACTGCTTCCACAGGCAGCGCCTTCTCTCACATANCAACACAAC
AAGACTTCACCCAAGACAACAATCAAATCGTCACAGAATCAATATGTTAC
TCTCCGGACATCATAAGGTCTAATCAAAACCAAACTGCATCCACAGGCAG
CGCCTTCTCTCACATCGAAACGTATACAAGCAGTGCATGCAGCTTCCCAA
CAACTACACAAACCAACAGCAACGACTGTAGCTCTTTCACAACCAGCCTC
ACAGCAATGACAACCTCGACAACAAACACCAACAAAGAGGTCAACGAGCG
AGACATTCTTCAATACTTGATTGCTATGGAACAACACAACACATCTGCAA
CACCCTCAACCTCTACAACTGAAACATGTTTCACGCACGATAACAACAAC
GACAGGCAACATTTCCAACAAACTCAAACAGTAACCACACATCAACCATT
CTGCACAGAAAACACCTCCCCGACATTCCACCACACGGAAAACACCTCCC
CGACATTTCACAACACAGACACAACAAACACACCATCATTTCACAGTGAT
TCTACCAATTTCTCTTTCTCACAAAGCGATACTTCAGACGACGATCACGA
GACCAAGAAAGTCAAACGTTTGTACAAATTCAATCCCAAACCTCTCGTTT
CCAAGCCCTCCATGCGTCGCCATCGCTACACCAACACGCAAGCACACGAG
AACCCCGAATACTTCGAACGACGTCGCAAAAACAACGAAGCTTCAAGAAG
ATCACGGTTAGCAAGAAGGTACAAAGAATGTCTCATCGTTGAAGAGAtgg
aaaaattgaagaaagaaaacGAAGAGCTCAAAGAACAGATTCAAAAactg
aaagaagaaaaacagaaCAATCTTTAACAAAGCCGTCAATCGGGTAATCG
TCTCATCACAACACAACAGAAGAAATATCAAATTGTCGAACAAACGCATA
TCCtttttttaaactaaaatgtAAATAATTTTCAACTATTAATTTGTAgg
attttgtaaaaaagaaaacattttccctgtaaataaacaaagatcAAAGA
AGCAAACAAATACATTTCTCAATGGTTCCACATTTTTTTACGTGAATGGT
ACAAATGATAAAAACGTGGCAATCGATAATGGATGATTTGTATCCCTGTT
GCTATGATACGATC
Run BLAST on NCBI

protein sequence of TCONS_00046490-protein

>TCONS_00046490-protein ID=TCONS_00046490-protein|Name=TCONS_00046490-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
NGEMSMEDFVSQSYPQQMMSATTQQDFTQDNNQIVTESMCYSPDIIRSNQ
NQTASTGSAFSHIXTQQDFTQDNNQIVTESICYSPDIIRSNQNQTASTGS
AFSHIETYTSSACSFPTTTQTNSNDCSSFTTSLTAMTTSTTNTNKEVNER
DILQYLIAMEQHNTSATPSTSTTETCFTHDNNNDRQHFQQTQTVTTHQPF
CTENTSPTFHHTENTSPTFHNTDTTNTPSFHSDSTNFSFSQSDTSDDDHE
TKKVKRLYKFNPKPLVSKPSMRRHRYTNTQAHENPEYFERRRKNNEASRR
SRLARRYKECLIVEEMEKLKKENEELKEQIQKLKEEKQNNL
Run BLAST on NCBI

transcript from alignment at scaffold_112:44985..46418+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046490 ID=TCONS_00046490|Name=TCONS_00046490|organism=Clytia hemisphaerica|type=transcript|length=1434bp|location=Sequence derived from alignment at scaffold_112:44985..46418+ (Clytia hemisphaerica)
CAATGGTGAGATGAGTATGGAAGACTTCGTTTCACAATCCTATCCTCAAC
AAATGATGTCTGCAACAACACAACAAGACTTCACCCAAGACAACAATCAA
ATCGTCACAGAATCAATGTGTTACTCTCCGGACATCATAAGGTCTAATCA
GAACCAAACTGCTTCCACAGGCAGCGCCTTCTCTCACATANCAACACAAC
AAGACTTCACCCAAGACAACAATCAAATCGTCACAGAATCAATATGTTAC
TCTCCGGACATCATAAGGTCTAATCAAAACCAAACTGCATCCACAGGCAG
CGCCTTCTCTCACATCGAAACGTATACAAGCAGTGCATGCAGCTTCCCAA
CAACTACACAAACCAACAGCAACGACTGTAGCTCTTTCACAACCAGCCTC
ACAGCAATGACAACCTCGACAACAAACACCAACAAAGAGGTCAACGAGCG
AGACATTCTTCAATACTTGATTGCTATGGAACAACACAACACATCTGCAA
CACCCTCAACCTCTACAACTGAAACATGTTTCACGCACGATAACAACAAC
GACAGGCAACATTTCCAACAAACTCAAACAGTAACCACACATCAACCATT
CTGCACAGAAAACACCTCCCCGACATTCCACCACACGGAAAACACCTCCC
CGACATTCCACCACACGGAAAACACCTCCCCGACATTCCACCACACGGAA
AACACCTTCCCGACATTCCACCACGCGGAAAACACCTCCCCGACATTCCA
CCACACGGAAAACACTTCCCCGACATTTCACAACACAGACACAACAAACA
CACCATCATTTCACAGTGATTCTACCAATTTCTCTTTCTCACAAAGCGAT
ACTTCAGACGACGATCACGAGACCAAGAAAGTCAAACGTTTGTACAAATT
CAATCCCAAACCTCTCGTTTCCAAGCCCTCCATGCGTCGCCATCGCTACA
CCAACACGCAAGCACACGAGAACCCCGAATACTTCGAACGACGTCGCAAA
AACAACGAAGCTTCAAGAAGATCACGGTTAGCAAGAAGGTACAAAGAATG
TCTCATCGTTGAAGAGAtggaaaaattgaagaaagaaaacGAAGAGCTCA
AAGAACAGATTCAAAAactgaaagaagaaaaacagaaCAATCTTTAACAA
AGCCGTCAATCGGGTAATCGTCTCATCACAACACAACAGAAGAAATATCA
AATTGTCGAACAAACGCATATCCtttttttaaactaaaatgtAAATAATT
TTCAACTATTAATTTGTAggattttgtaaaaaagaaaacattttccctgt
aaataaacaaagatcAAAGAAGCAAACAAATACATTTCTCAATGGTTCCA
CATTTTTTTACGTGAATGGTACAAATGATAAAAACGTGGCAATCGATAAT
GGATGATTTGTATCCCTGTTGCTATGATACGATC

Coding sequence (CDS) from alignment at scaffold_112:44985..46418+

>TCONS_00046490 ID=TCONS_00046490|Name=TCONS_00046490|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_112:44985..46418+ (Clytia hemisphaerica)
AATGGTGAGATGAGTATGGAAGACTTCGTTTCACAATCCTATCCTCAACA
AATGATGTCTGCAACAACACAACAAGACTTCACCCAAGACAACAATCAAA
TCGTCACAGAATCAATGTGTTACTCTCCGGACATCATAAGGTCTAATCAG
AACCAAACTGCTTCCACAGGCAGCGCCTTCTCTCACATANCAACACAACA
AGACTTCACCCAAGACAACAATCAAATCGTCACAGAATCAATATGTTACT
CTCCGGACATCATAAGGTCTAATCAAAACCAAACTGCATCCACAGGCAGC
GCCTTCTCTCACATCGAAACGTATACAAGCAGTGCATGCAGCTTCCCAAC
AACTACACAAACCAACAGCAACGACTGTAGCTCTTTCACAACCAGCCTCA
CAGCAATGACAACCTCGACAACAAACACCAACAAAGAGGTCAACGAGCGA
GACATTCTTCAATACTTGATTGCTATGGAACAACACAACACATCTGCAAC
ACCCTCAACCTCTACAACTGAAACATGTTTCACGCACGATAACAACAACG
ACAGGCAACATTTCCAACAAACTCAAACAGTAACCACACATCAACCATTC
TGCACAGAAAACACCTCCCCGACATTCCACCACACGGAAAACACCTCCCC
GACATTTCACAACACAGACACAACAAACACACCATCATTTCACAGTGATT
CTACCAATTTCTCTTTCTCACAAAGCGATACTTCAGACGACGATCACGAG
ACCAAGAAAGTCAAACGTTTGTACAAATTCAATCCCAAACCTCTCGTTTC
CAAGCCCTCCATGCGTCGCCATCGCTACACCAACACGCAAGCACACGAGA
ACCCCGAATACTTCGAACGACGTCGCAAAAACAACGAAGCTTCAAGAAGA
TCACGGTTAGCAAGAAGGTACAAAGAATGTCTCATCGTTGAAGAGAtgga
aaaattgaagaaagaaaacGAAGAGCTCAAAGAACAGATTCAAAAactga
aagaagaaaaacagaaCAATCTTTAAAATGGTGAGATGAGTATGGAAGAC
TTCGTTTCACAATCCTATCCTCAACAAATGATGTCTGCAACAACACAACA
AGACTTCACCCAAGACAACAATCAAATCGTCACAGAATCAATGTGTTACT
CTCCGGACATCATAAGGTCTAATCAGAACCAAACTGCTTCCACAGGCAGC
GCCTTCTCTCACATANCAACACAACAAGACTTCACCCAAGACAACAATCA
AATCGTCACAGAATCAATATGTTACTCTCCGGACATCATAAGGTCTAATC
AAAACCAAACTGCATCCACAGGCAGCGCCTTCTCTCACATCGAAACGTAT
ACAAGCAGTGCATGCAGCTTCCCAACAACTACACAAACCAACAGCAACGA
CTGTAGCTCTTTCACAACCAGCCTCACAGCAATGACAACCTCGACAACAA
ACACCAACAAAGAGGTCAACGAGCGAGACATTCTTCAATACTTGATTGCT
ATGGAACAACACAACACATCTGCAACACCCTCAACCTCTACAACTGAAAC
ATGTTTCACGCACGATAACAACAACGACAGGCAACATTTCCAACAAACTC
AAACAGTAACCACACATCAACCATTCTGCACAGAAAACACCTCCCCGACA
TTCCACCACACGGAAAACACCTCCCCGACATTTCACAACACAGACACAAC
AAACACACCATCATTTCACAGTGATTCTACCAATTTCTCTTTCTCACAAA
GCGATACTTCAGACGACGATCACGAGACCAAGAAAGTCAAACGTTTGTAC
AAATTCAATCCCAAACCTCTCGTTTCCAAGCCCTCCATGCGTCGCCATCG
CTACACCAACACGCAAGCACACGAGAACCCCGAATACTTCGAACGACGTC
GCAAAAACAACGAAGCTTCAAGAAGATCACGGTTAGCAAGAAGGTACAAA
GAATGTCTCATCGTTGAAGAGAtggaaaaattgaagaaagaaaacGAAGA
GCTCAAAGAACAGATTCAAAAactgaaagaagaaaaacagaaCAATCTTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029674XLOC_029674Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046490-proteinTCONS_00046490-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046490-exon-scaffold_112-1491911889:44985..45638TCONS_00046490-exon-scaffold_112-1491911889:44985..45638Clytia hemisphaericaexon
TCONS_00046490-exon-scaffold_112-1510915933:44985..45638TCONS_00046490-exon-scaffold_112-1510915933:44985..45638Clytia hemisphaericaexon
TCONS_00046490-exon-scaffold_112-1575043694:44985..45638TCONS_00046490-exon-scaffold_112-1575043694:44985..45638Clytia hemisphaericaexon
TCONS_00046490-exon-scaffold_112-1491911889:45759..46418TCONS_00046490-exon-scaffold_112-1491911889:45759..46418Clytia hemisphaericaexon
TCONS_00046490-exon-scaffold_112-1510915933:45759..46418TCONS_00046490-exon-scaffold_112-1510915933:45759..46418Clytia hemisphaericaexon
TCONS_00046490-exon-scaffold_112-1575043694:45759..46418TCONS_00046490-exon-scaffold_112-1575043694:45759..46418Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_112supercontigscaffold_112:44985..46418 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0656654	0.39473	0.282787	0.105219	0.17765	0	0.077288	0.188691	0.370195	0.187144	0.59926	2.32822	1.08169	0.0845442	0.487683	0.381582	2.35173	0.373227	0.511627	0.103428	0.241882	0.117215	0.0726096	0.137886	0.0308843	0.199348	0.198944	0.241726	0.283122
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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