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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046489 ID=TCONS_00046489|Name=TCONS_00046489|organism=Clytia hemisphaerica|type=transcript|length=741bp
gattgaTTGTTTCCATTGTTTGTTTCATCGtttccaatgacgtcatcggt
tccAAATTATTTCCACattcccAACAGGACAGCACGCATGAGAAGTTACA
CCAGTCGTTTTTGACGCTGTTTCTACGCTTACGTTATTTATTCATTCCGT
CTCTACATTTCTGTTTGCGTTGAAACATTACTACCTTCATTTATGCTTGT
TTTTATATGTATTTTTACCACTTTACTAACTTGACTATTATTACGTCAAC
CATCACTAGTTTCGGCGGCGTGTCTACTCTTACGCCCTTACGTTTCCACC
TTATGGATTACCTTGGTTGAATATGAAAAAGAGTACAGTGCTAAAACTAA
TGTTGCTATTGAGTTCCCTTGTAAATATCCGACCCTACTCGGTGAAATTT
TGTTCAGTCAGTCAGGGAAAAAATTTTAGATACTATTTTTAGTGGAAAAC
CCTGTCAACAGTGACCTCGGTGAAAACATGAATTTTTCTAACTTTTGCTC
CCAGGATTTTTTTGTATGGTTTAGGTTTGTCACGTCCACGGGTGAAACAA
TCAAGTTAAATTATCTAAGTGGCTGTCAAAGTTTTTTCGGCCTTTTTCGG
GAGAGACTCGTGGGTGCTAAATGTTTGATGGTTTCGATTTGAAATTGCTC
TTCATTTCAAGCCGATGGACGTTTTTTAGTATATATAcgataaatattta
tattatatttagataagaatattttattgtatagaattaaa Run BLAST on NCBI transcript from alignment at scaffold_112:30701..32445+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046489 ID=TCONS_00046489|Name=TCONS_00046489|organism=Clytia hemisphaerica|type=transcript|length=1745bp|location=Sequence derived from alignment at scaffold_112:30701..32445+ (Clytia hemisphaerica)
gattgaTTGTTTCCATTGTTTGTTTCATCGtttccaatgacgtcatcggt
tccAAATTATTTCCACGTAAGTATATTTAATCATGTACTTGGTTTCCAGC
TGATGTGAAATCGTCTAAGGCCTAAATTTTTCTGCATATccgaattttta
aaaaaaagtggaTCCATTCAAAAATCTTGGAAAGGAGGGCTTtgttagcc
tgtaccaaactcgtCTTGGTGGAATGAAAAGGCTAAGGGGAATTCAGTAT
GATGTACAGTTCAGACTTTTATGTGACTGAGACGAATCCATGCAAGTCTC
GGTTGTAAAGAGTTGAACTATTTTCCGAATTTAAGCTTCTTCATTTAGTC
GAATAATTGCACTTGTTTCTTTATGTAGTAAAAATAGCGTATAAAGCCTA
AATTATCTCAATTTGACCTTAAAGTAAGAAAAGAAGTTATACCACGGGGG
Gtgctacccttgtcgaccgacgggggtgctccgctgaggttcgaaaaatg
gaccctatgtgggactcgaaatttgcgaaaaacgtgaccctgaatgggac
tgaaattccaaaattttcttaaatgttctacttttttcccaaattttcca
aaaatagacaccctacgagggactgatttttctattttggtgtttttgcg
accctacctgggacttgtggaggttaaaaaaggtacccNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTTTCAAACTTTTCCACCACATCAGA
TTTTCAGCATTCTCATTAGCcgctttttaccatttttataaaaactattt
ATTCATCTTCGAGTCAGCAAGTTTTGTTGTGCAAATTAacctcaaaaatt
ttcaaattttttatttttagattcccAACAGGACAGCACGCATGAGAAGT
TACACCAGTCGTTTTTGACGCTGTTTCTACGCTTACGTTATTTATTCATT
CCGTCTCTACATTTCTGTTTGCGTTGAAACATTACTACCTTCATTTATGC
TTGTTTTTATATGTATTTTTACCACTTTACTAACTTGACTATTATTACGT
CAACCATCACTAGTTTCGGCGGCGTGTCTACTCTTACGCCCTTACGTTTC
CACCTTATGGATTACCTTGGTTGAATATGAAAAAGAGTACAGTGCTAAAA
CTAATGTTGCTATTGAGTTCCCTTGTAAATATCCGACCCTACTCGGTGAA
ATTTTGTTCAGTCAGTCAGGGAAAAAATTTTAGATACTATTTTTAGTGGA
AAACCCTGTCAACAGTGACCTCGGTGAAAACATGAATTTTTCTAACTTTT
GCTCCCAGGATTTTTTTGTATGGTTTAGGTTTGTCACGTCCACGGGTGAA
ACAATCAAGTTAAATTATCTAAGTGGCTGTCAAAGTTTTTTCGGCCTTTT
TCGGGAGAGACTCGTGGGTGCTAAATGTTTGATGGTTTCGATTTGAAATT
GCTCTTCATTTCAAGCCGATGGACGTTTTTTAGTATATATAcgataaata
tttatattatatttagataagaatattttattgtatagaattaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046489-exon-scaffold_112-1491911889:30701..30766 | TCONS_00046489-exon-scaffold_112-1491911889:30701..30766 | Clytia hemisphaerica | exon |
| TCONS_00046489-exon-scaffold_112-1510915933:30701..30766 | TCONS_00046489-exon-scaffold_112-1510915933:30701..30766 | Clytia hemisphaerica | exon |
| TCONS_00046489-exon-scaffold_112-1575043694:30701..30766 | TCONS_00046489-exon-scaffold_112-1575043694:30701..30766 | Clytia hemisphaerica | exon |
| TCONS_00046489-exon-scaffold_112-1491911889:31771..32445 | TCONS_00046489-exon-scaffold_112-1491911889:31771..32445 | Clytia hemisphaerica | exon |
| TCONS_00046489-exon-scaffold_112-1510915933:31771..32445 | TCONS_00046489-exon-scaffold_112-1510915933:31771..32445 | Clytia hemisphaerica | exon |
| TCONS_00046489-exon-scaffold_112-1575043694:31771..32445 | TCONS_00046489-exon-scaffold_112-1575043694:31771..32445 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_112 | supercontig | scaffold_112:30701..32445 + |
Blast
The following BLAST results are available for this feature:
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