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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046488 ID=TCONS_00046488|Name=TCONS_00046488|organism=Clytia hemisphaerica|type=transcript|length=1302bp
AGATGATGTCAAGCAAGTTGAGAGATGCGACTACCATCGAACTGGTATGA
AAGTCTTCACTCTGGAAAAAACGATGCGAATNAGATGATGTCAAGCAAGT
TGAGAGATGCGACTACCATCGAACTGGTATGAAAGTCTTCACTCTGGAAA
AAACGATGCGAATGGCGGTAAATATTCACCAGATGATTGAAATCTTTCAG
GAAGAAATCGAAAAGGAAATCGTCGACGTTCCGTTAGAATACAAAACACG
AATTCTACGCAGACCGTACGCCCCCTCCGCCCGAAAAACAAGAAAAGCTT
CCAAAGATGTCCCTCTTAAGCCTCAAGAACAGAAAGAACAAAAGCAACCA
ATACCAACGGATGACGTCAGTCTCCACGATAACCCGAATCATCCTTCAAC
TCAAAGCGTGCGAAGGAAAACCAACATTGCCTCATTCTGCGATCCAGAAA
AATTGTTAACAGACATAAATGCTCAATCAGGGTCTGTttccaaaaaactt
tcaacttcATTCTCTTATGTTCGTGGTCAAAGTGGTCATCAAATCAAAAG
TGATTCAAAGCCCAACCTCATTTATTTAAACGACTTTAGATTCGACTTCA
ATAACTTACTTTAATTCGTCTGATGCAGCTTATTTGAGTGCAATTTTAAG
AAGGCTGATGAAAAAGGATGTTCAGTTAACCGTTATATGTGGTACACTGG
AAGAACTGGCTATTTTAAAGTATGTTTTTCAACATAATTTAGAGGTATCA
GAAATAACAACATTTGCACCGTCTTTAACAGGAAAATACCCAACCAAAGC
AGAGAAATTGGAGGCTTTAAAAACGGGAAAAGTCTTACTCACTTGTTATA
GAGGTTTCAGAGGTTGCGAAATGGACCATTGTATTTTATTTGTTAAACCT
CAAGATAAAGTTCCAAAGAACTTGTACATTGAGATGCTCACTCGAGCTAT
CAATTTCGTGGATATAATTGTTCTTCCCGTAAAGAAATCAAGCAGGGTAT
CTCGTTTGATTGGAATTTTCGATAAATGGCTGCAAGATGGTCTTGTTTCT
CCTACAGATACTAAACGTTCAAGCACAAACATTATTTTCTCGTCATTGGA
AGAGCTAGATGTTATTGTACCACTTGATCAAACCTGCGATCATAATGTTG
AGAGACAGATTCTTCAAGTCATCGAGGATAGCTCGTTATTCAATCATTCC
CACATCGATGCAGCAGTAGGgaaTCTGCAACAATTCAGGACTAGGTATAt
ttccaatgaaataattttcaaactgtCTTAAGGGTCATGCCCTTTTTTGC
TA Run BLAST on NCBI protein sequence of TCONS_00046488-protein >TCONS_00046488-protein ID=TCONS_00046488-protein|Name=TCONS_00046488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MKKDVQLTVICGTLEELAILKYVFQHNLEVSEITTFAPSLTGKYPTKAEK
LEALKTGKVLLTCYRGFRGCEMDHCILFVKPQDKVPKNLYIEMLTRAINF
VDIIVLPVKKSSRVSRLIGIFDKWLQDGLVSPTDTKRSSTNIIFSSLEEL
DVIVPLDQTCDHNVERQILQVIEDSSLFNHSHIDAAVGNLQQFRTRYISN
EIIFKLS Run BLAST on NCBI transcript from alignment at scaffold_112:19404..21019+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046488 ID=TCONS_00046488|Name=TCONS_00046488|organism=Clytia hemisphaerica|type=transcript|length=1616bp|location=Sequence derived from alignment at scaffold_112:19404..21019+ (Clytia hemisphaerica)
AGATGATGTCAAGCAAGTTGAGAGATGCGACTACCATCGAACTGGTATGA
AAGTCTTCACTCTGGAAAAAACGATGCGAATNAGATGATGTCAAGCAAGT
TGAGAGATGCGACTACCATCGAACTGGTATGAAAGTCTTCACTCTGGAAA
AAACGATGCGAATGGCGGTAAATATTCACCAGATGATTGAAATCTTTCAG
GAAGAAATCGAAAAGGAAATCGTCGACGTTCCGTTAGAATACAAAACACG
AATTCTACGCAGACCGTACGCCCCCTCCGCCCGAAAAACAAGAAAAGCTT
CCAAAGATGTCCCTCTTAAGCCTCAAGAACAGAAAGAACAAAAGCAACCA
ATACCAACGGATGACGTCAGTCTCCACGATAACCCGAATCATCCTTCAAC
TCAAAGCGTGCGAAGGAAAACCAACATTGCCTCATTCTGCGATCCAGAAA
AATTGTTAACAGACATAAATGCTCAATCAGGGTCTGTttccaaaaaactt
tcaacttcATTCTCTTATGTTCGTGGTCAAAGTGGTCATCAAATCAAAAG
TGATTCAAAGCCCAACCTCATTTATTTAAACGACTTTAGATTCGACTTCA
ATAACTTACTTTAATTCGTCTGATGCAGCTTATTTGAGTGCAATTTTAAG
AAGGCTGATGAAAAAGGATGTTCAGTTAACCGTTATATGTGGTACACTGG
AAGAACTGGCTATTTTAAAGTATGTTTTTCAACATAATTTAGAGGTATCA
GAAATAACAACATTTGCACCGTCTTTAACAGGAAAATACCCAACCAAAGC
AGAGAAATTGGAGGCTTTAAAAACGGGAAAAGTCTTACTCACTTGTTATA
GAGGTTTCAGAGGTTGCGAAATGGACCATTGTATTTTATTTGTTAAACCT
CAAGATAAAGTTCCAAAGAACTTGTACATTGAGATGCTCACTCGAGCTAT
CAATTTCGTGGATATAATTGTTCTTCCCGTAAAGAAATCAAGCAGGGTAT
CTCGTTTGATTGGAATTTTCGATAAATGGCTGCAAGATGGTCTTGTTTCT
CCTACAGATACTAAACGTTCAAGCACAAACATTATTTTCTCGTCATTGGA
AGAGCTAGATGTTATTGTACCACTTGATCAAACCTGCGATCATAATGTTG
AGAGACAGATTCTTCAAGTCATCGAGGATAGCTCGTTATTCAATCATTCC
CACATCGATGCAGCAGTAGGGTAAGTAGAATTTATTGTATATCGGTACTT
CATATACAATATTCACAGTAACCCTTACAACATAAGTGTTTTAGTATATT
CTCGAAAGTTTAATACTTACAACATAACCTACACTAAGTGCGTAACGTAA
AATCATTACTTCTTAAAAAGTCGAAGATACAGAGCACATATTGTCAGAAT
GATATCTTATCCCATAtcatattttatcacccgataACATCACCGTAAAT
AACTAGATTTGTGATACCAACGGAAgcatatattttgaaaacgcgttggt
ttttaaagaaagttatcttttcttattttttcaggaaTCTGCAACAATTC
AGGACTAGGTATAtttccaatgaaataattttcaaactgtCTTAAGGGTC
ATGCCCTTTTTTGCTA Coding sequence (CDS) from alignment at scaffold_112:19404..21019+ >TCONS_00046488 ID=TCONS_00046488|Name=TCONS_00046488|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_112:19404..21019+ (Clytia hemisphaerica)
ATGAAAAAGGATGTTCAGTTAACCGTTATATGTGGTACACTGGAAGAACT
GGCTATTTTAAAGTATGTTTTTCAACATAATTTAGAGGTATCAGAAATAA
CAACATTTGCACCGTCTTTAACAGGAAAATACCCAACCAAAGCAGAGAAA
TTGGAGGCTTTAAAAACGGGAAAAGTCTTACTCACTTGTTATAGAGGTTT
CAGAGGTTGCGAAATGGACCATTGTATTTTATTTGTTAAACCTCAAGATA
AAGTTCCAAAGAACTTGTACATTGAGATGCTCACTCGAGCTATCAATTTC
GTGGATATAATTGTTCTTCCCGTAAAGAAATCAAGCAGGGTATCTCGTTT
GATTGGAATTTTCGATAAATGGCTGCAAGATGGTCTTGTTTCTCCTACAG
ATACTAAACGTTCAAGCACAAACATTATTTTCTCGTCATTGGAAGAGCTA
GATGTTATTGTACCACTTGATCAAACCTGCGATCATAATGTTGAGAGACA
GATTCTTCAAGTCATCGAGGATAGCTCGTTATTCAATCATTCCCACATCG
ATGCAGCAGTAGGgaaTCTGCAACAATTCAGGACTAGGTATAtttccaat
gaaataattttcaaactgtCTTAAATGAAAAAGGATGTTCAGTTAACCGT
TATATGTGGTACACTGGAAGAACTGGCTATTTTAAAGTATGTTTTTCAAC
ATAATTTAGAGGTATCAGAAATAACAACATTTGCACCGTCTTTAACAGGA
AAATACCCAACCAAAGCAGAGAAATTGGAGGCTTTAAAAACGGGAAAAGT
CTTACTCACTTGTTATAGAGGTTTCAGAGGTTGCGAAATGGACCATTGTA
TTTTATTTGTTAAACCTCAAGATAAAGTTCCAAAGAACTTGTACATTGAG
ATGCTCACTCGAGCTATCAATTTCGTGGATATAATTGTTCTTCCCGTAAA
GAAATCAAGCAGGGTATCTCGTTTGATTGGAATTTTCGATAAATGGCTGC
AAGATGGTCTTGTTTCTCCTACAGATACTAAACGTTCAAGCACAAACATT
ATTTTCTCGTCATTGGAAGAGCTAGATGTTATTGTACCACTTGATCAAAC
CTGCGATCATAATGTTGAGAGACAGATTCTTCAAGTCATCGAGGATAGCT
CGTTATTCAATCATTCCCACATCGATGCAGCAGTAGGgaaTCTGCAACAA
TTCAGGACTAGGTATAtttccaatgaaataattttcaaactgtCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046488-exon-scaffold_112-1491911889:19404..20623 | TCONS_00046488-exon-scaffold_112-1491911889:19404..20623 | Clytia hemisphaerica | exon |
| TCONS_00046488-exon-scaffold_112-1510915933:19404..20623 | TCONS_00046488-exon-scaffold_112-1510915933:19404..20623 | Clytia hemisphaerica | exon |
| TCONS_00046488-exon-scaffold_112-1575043694:19404..20623 | TCONS_00046488-exon-scaffold_112-1575043694:19404..20623 | Clytia hemisphaerica | exon |
| TCONS_00046488-exon-scaffold_112-1491911889:20938..21019 | TCONS_00046488-exon-scaffold_112-1491911889:20938..21019 | Clytia hemisphaerica | exon |
| TCONS_00046488-exon-scaffold_112-1510915933:20938..21019 | TCONS_00046488-exon-scaffold_112-1510915933:20938..21019 | Clytia hemisphaerica | exon |
| TCONS_00046488-exon-scaffold_112-1575043694:20938..21019 | TCONS_00046488-exon-scaffold_112-1575043694:20938..21019 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_112 | supercontig | scaffold_112:19404..21019 + |
Blast
The following BLAST results are available for this feature:
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