TCONS_00046481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046481
Unique NameTCONS_00046481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046481 ID=TCONS_00046481|Name=TCONS_00046481|organism=Clytia hemisphaerica|type=transcript|length=567bp
GATGGAATAAAGGTGAACGCTGTATCTTATCAAAAACATCTAGATAAACA
ACTCATTCCCGAAATTAATAACTTGGTTAGCAAAAGAATTGGGTATTGGG
TTTGCATACAAGATAGCGCTCCATCACATAGGTCGAATCTCATGCAAGGT
TACTTGAAAGAAAAGCTACGGTAGCGATTTGTCAAGTCAAATGAGTGGCC
CCCAGCGTCACCTGATTGCAACCCGTTAGACTACCATTTCCGGGACAAAG
TAAAAGTCAAGGTTTACAAAAATCGATTCAATGAACCGTTTGAAAGTGAA
AAACAACTGAAAAGAAGAATAAAGAGAGTTTGGAATGAAATGGCTAGTGA
TGTTGTTGAAATTCGTAAGGCCTTAAAACAATTTGTGCCTCGCTTGAAGC
AGGTTGCTGAGAAAGAAGGAAATTGCATCAAAATGACTTTTAAATGAACA
TTATTATAATGGTATTATTCTATTTGTTAAAATGTCACTAATTAATAATT
GCTGAATGAAAGTTTCAATTTGCTGATTTGTTAAACTTGGATTTATCAGa
tctattttcattttttg
Run BLAST on NCBI

transcript from alignment at scaffold_111:23383..23949

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046481 ID=TCONS_00046481|Name=TCONS_00046481|organism=Clytia hemisphaerica|type=transcript|length=567bp|location=Sequence derived from alignment at scaffold_111:23383..23949 (Clytia hemisphaerica)
caaaaaatgaaaatagatCTGATAAATCCAAGTTTAACAAATCAGCAAAT
TGAAACTTTCATTCAGCAATTATTAATTAGTGACATTTTAACAAATAGAA
TAATACCATTATAATAATGTTCATTTAAAAGTCATTTTGATGCAATTTCC
TTCTTTCTCAGCAACCTGCTTCAAGCGAGGCACAAATTGTTTTAAGGCCT
TACGAATTTCAACAACATCACTAGCCATTTCATTCCAAACTCTCTTTATT
CTTCTTTTCAGTTGTTTTTCACTTTCAAACGGTTCATTGAATCGATTTTT
GTAAACCTTGACTTTTACTTTGTCCCGGAAATGGTAGTCTAACGGGTTGC
AATCAGGTGACGCTGGGGGCCACTCATTTGACTTGACAAATCGCTACCGT
AGCTTTTCTTTCAAGTAACCTTGCATGAGATTCGACCTATGTGATGGAGC
GCTATCTTGTATGCAAACCCAATACCCAATTCTTTTGCTAACCAAGTTAT
TAATTTCGGGAATGAGTTGTTTATCTAGATGTTTTTGATAAGATACAGCG
TTCACCTTTATTCCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029666XLOC_029666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046481-exon-scaffold_111-1491911889:23383..23949TCONS_00046481-exon-scaffold_111-1491911889:23383..23949Clytia hemisphaericaexon
TCONS_00046481-exon-scaffold_111-1510915933:23383..23949TCONS_00046481-exon-scaffold_111-1510915933:23383..23949Clytia hemisphaericaexon
TCONS_00046481-exon-scaffold_111-1575043694:23383..23949TCONS_00046481-exon-scaffold_111-1575043694:23383..23949Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_111supercontigscaffold_111:23383..23949 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.792799	0.289914	1.79529	2.08574	0.80185	0.316816	0.764451	0.357835	0.0835095	0.62064	0.502007	1.122	0.395449	0.205339	0.337633	0.0603887	0.0743939	0	0.421381	0.220473	0.0958153	0.140206	0.227252	0.103302	6.70314	5.12777	0	0.435062	0.329979	0.224131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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