TCONS_00046471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046471
Unique NameTCONS_00046471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length729

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046471 ID=TCONS_00046471|Name=TCONS_00046471|organism=Clytia hemisphaerica|type=transcript|length=729bp
ctaaaattgaTCTTAATGTTGATCTTTCAAATTCTAGATGAATCCGGTTC
ATTAATAACTTCACACATTTGGTATAAGATAAGTGATTCTTCATTTGCTA
TGCAATTAGATAAACGAATAAGACGGAAATTGTGGAAAAggcgttgtggt
atagtggacatcgaccttgattcctgtacaggcgaccaaggttcgatttc
cgctcacaacggttcacttggcaagtgaacaaaccttcgcccggatcaac
ccatgccatgtgaggggaattgggtagtcagttcaaggtgctgacgagat
gcttactcaaagcatctataaTTGAGAGATTGGGCTCCCAGAGCCacctg
taactcaaccataatagatagatagagaAGTAAGTTGTATTTTTGATGTT
TCGATTGTAAGTGATGTtatataaaaatctaaaatacaagTTTTTGGTTT
GGAATGGCCTAAACCATTCATATTTGTTGTCTTGAAGAAGTTGTATGGAA
TAGTGGAGGATCGGGAATATGTTCATTTACCAGAAGATCACCAAGGCTCA
TCACCAGATCTAAAGCACCACTTTGTCGTCGACGTCGTAAAATCTTGAAA
CAACTTCCATTATATTTCTcttcaaaatgtcttttcaaTTTGTTGAAGAG
ATTGACGATCTTGTTTTCACGTTTCTTGATCACCGATATAAAGTTGTTGA
ACTTGGAAATGTCATCCTTTTGTTCAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_110:119813..120541

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046471 ID=TCONS_00046471|Name=TCONS_00046471|organism=Clytia hemisphaerica|type=transcript|length=729bp|location=Sequence derived from alignment at scaffold_110:119813..120541 (Clytia hemisphaerica)
CTCTGAACAAAAGGATGACATTTCCAAGTTCAACAACTTTATATCGGTGA
TCAAGAAACGTGAAAACAAGATCGTCAATCTCTTCAACAAAttgaaaaga
cattttgaagAGAAATATAATGGAAGTTGTTTCAAGATTTTACGACGTCG
ACGACAAAGTGGTGCTTTAGATCTGGTGATGAGCCTTGGTGATCTTCTGG
TAAATGAACATATTCCCGATCCTCCACTATTCCATACAACTTCTTCAAGA
CAACAAATATGAATGGTTTAGGCCATTCCAAACCAAAAActtgtatttta
gatttttatataACATCACTTACAATCGAAACATCAAAAATACAACTTAC
TtctctatctatctattatggttgagttacaggtGGCTCTGGGAGCCCAA
TCTCTCAAttatagatgctttgagtaagcatctcgtcagcaccttgaact
gactacccaattcccctcacatggcatgggttgatccgggcgaaggtttg
ttcacttgccaagtgaaccgttgtgagcggaaatcgaaccttggtcgcct
gtacaggaatcaaggtcgatgtccactataccacaacgccTTTTCCACAA
TTTCCGTCTTATTCGTTTATCTAATTGCATAGCAAATGAAGAATCACTTA
TCTTATACCAAATGTGTGAAGTTATTAATGAACCGGATTCATCTAGAATT
TGAAAGATCAACATTAAGAtcaattttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029656XLOC_029656Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046471-exon-scaffold_110-1491911889:119813..120541TCONS_00046471-exon-scaffold_110-1491911889:119813..120541Clytia hemisphaericaexon
TCONS_00046471-exon-scaffold_110-1510915933:119813..120541TCONS_00046471-exon-scaffold_110-1510915933:119813..120541Clytia hemisphaericaexon
TCONS_00046471-exon-scaffold_110-1575043694:119813..120541TCONS_00046471-exon-scaffold_110-1575043694:119813..120541Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:119813..120541 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.214345	0.2141	0.533019	0.244214	0.474806	0.147311	0.359709	0.664316	0.179967	0	0.146084	0.372741	0.519392	0.554814	0.392762	0.213742	0.260461	0.108707	0	0.0785164	0.410278	0.20798	0.0794318	0.214715	0.229962	0.135426	0.194164	0	0.0832494	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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