TCONS_00046467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046467
Unique NameTCONS_00046467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046467 ID=TCONS_00046467|Name=TCONS_00046467|organism=Clytia hemisphaerica|type=transcript|length=286bp
GTCCGGGACAGTGTATATCATCTGTTTATGTCCACATTTACCAGCGGCTT
TACAATAAGCAAACAGAGTATCATCAAATTTTACACTTGCGTTTGATTCC
CAGTTTAGTGAAATCGGAGAGGTCATGTCGCAGTTATTGGTGAAATTTAC
CCTAATGGAGAGAAGATAAAAATTCCAATCGGGGAAAGAGAAAGATCCAT
TGAGTAATTCAGTCATTTTTAAGGGTTGAGATTGTCAATAGAACTTCCAA
AAGGAGATAAACCTGAACAATTCGGGGGGAaatgat
Run BLAST on NCBI

transcript from alignment at scaffold_110:17013..17298

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046467 ID=TCONS_00046467|Name=TCONS_00046467|organism=Clytia hemisphaerica|type=transcript|length=286bp|location=Sequence derived from alignment at scaffold_110:17013..17298 (Clytia hemisphaerica)
atcattTCCCCCCGAATTGTTCAGGTTTATCTCCTTTTGGAAGTTCTATT
GACAATCTCAACCCTTAAAAATGACTGAATTACTCAATGGATCTTTCTCT
TTCCCCGATTGGAATTTTTATCTTCTCTCCATTAGGGTAAATTTCACCAA
TAACTGCGACATGACCTCTCCGATTTCACTAAACTGGGAATCAAACGCAA
GTGTAAAATTTGATGATACTCTGTTTGCTTATTGTAAAGCCGCTGGTAAA
TGTGGACATAAACAGATGATATACACTGTCCCGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029652XLOC_029652Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046467-exon-scaffold_110-1491911889:17013..17298TCONS_00046467-exon-scaffold_110-1491911889:17013..17298Clytia hemisphaericaexon
TCONS_00046467-exon-scaffold_110-1510915933:17013..17298TCONS_00046467-exon-scaffold_110-1510915933:17013..17298Clytia hemisphaericaexon
TCONS_00046467-exon-scaffold_110-1575043694:17013..17298TCONS_00046467-exon-scaffold_110-1575043694:17013..17298Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:17013..17298 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.446602	1.03709	0	3.10964	0.892521	0	0	0.38593	0.478037	1.85786	0	0	0.316317	0	0	1.25535	0.059916	0.872784	0.0314802	0	0.276558	0.52511	0	0.491712	1.20084	0	0	0	0.343413
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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