TCONS_00046466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046466
Unique NameTCONS_00046466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046466 ID=TCONS_00046466|Name=TCONS_00046466|organism=Clytia hemisphaerica|type=transcript|length=514bp
CATTGATCCTGAGTTCTTCAATACCATCTGGATCCACTCCTGATCCAAGG
AACTTTTTCCAACTTCCACCACAAACTCTTGCAGAACTTCTTGTTCTCGA
CGCCATCTTGAAAATTGTACCATTTGCACgctgaaacaaatattttttca
cgCTTCCAAACACACGCGGGACGAATATTTAGCATaaatttgtatatttt
gaataattaagAAACGAGATAGGCTATTACGTAACTTTTACGCATAATTA
GAaaaataaaccaatcagattcagaTAGTGGAAAGAAACTTAAAATATGC
TTCCTTTTTTAGGGGTAAAATGAAGTTATATTTCCATGTCGACCTAATAA
CTGTTTCGAAATACCGTGTCGacttaaggaaatatttaactaAAAAATTC
TAACTTAGTTTGACCCCGATTGCGGACTGCCTGAGGTTTGTAAACTTTCA
TATCGGGTTCTCGCGTTGTAATCAGTGTTTTAATATGAGGGTCTTCGTTT
CAAACTTtgtattt
Run BLAST on NCBI

transcript from alignment at scaffold_110:14504..15017

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046466 ID=TCONS_00046466|Name=TCONS_00046466|organism=Clytia hemisphaerica|type=transcript|length=514bp|location=Sequence derived from alignment at scaffold_110:14504..15017 (Clytia hemisphaerica)
aaatacaAAGTTTGAAACGAAGACCCTCATATTAAAACACTGATTACAAC
GCGAGAACCCGATATGAAAGTTTACAAACCTCAGGCAGTCCGCAATCGGG
GTCAAACTAAGTTAGAATTTTTtagttaaatatttccttaagtCGACACG
GTATTTCGAAACAGTTATTAGGTCGACATGGAAATATAACTTCATTTTAC
CCCTAAAAAAGGAAGCATATTTTAAGTTTCTTTCCACTAtctgaatctga
ttggtttattttTCTAATTATGCGTAAAAGTTACGTAATAGCCTATCTCG
TTTcttaattattcaaaatatacaaatttATGCTAAATATTCGTCCCGCG
TGTGTTTGGAAGcgtgaaaaaatatttgtttcagcGTGCAAATGGTACAA
TTTTCAAGATGGCGTCGAGAACAAGAAGTTCTGCAAGAGTTTGTGGTGGA
AGTTGGAAAAAGTTCCTTGGATCAGGAGTGGATCCAGATGGTATTGAAGA
ACTCAGGATCAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029651XLOC_029651Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046466-exon-scaffold_110-1491911889:14504..15017TCONS_00046466-exon-scaffold_110-1491911889:14504..15017Clytia hemisphaericaexon
TCONS_00046466-exon-scaffold_110-1510915933:14504..15017TCONS_00046466-exon-scaffold_110-1510915933:14504..15017Clytia hemisphaericaexon
TCONS_00046466-exon-scaffold_110-1575043694:14504..15017TCONS_00046466-exon-scaffold_110-1575043694:14504..15017Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:14504..15017 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.113431	0.131704	0.257704	0.156865	0	0.448645	0	0.294063	0.364245	1.06063	0.0774688	0.309444	0.642722	0.132101	0	0.261964	0.358006	0.123651	0.388176	0	0.32914	0.133371	0	0.374664	0.334379	0	0	0.258213	0.263078
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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