TCONS_00046456 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046456
Unique NameTCONS_00046456
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1134

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046456 ID=TCONS_00046456|Name=TCONS_00046456|organism=Clytia hemisphaerica|type=transcript|length=1134bp
GATATGGCGACACCATACCATCCCATTGGacggcaaaaatattttcagct
atttGGATCTTCTTTGGCGTCACATTCTTTGGGATGTATTTGGGCACAAT
CACATCTGTCATGACCACAAACCTAAAAATCGAAAGCAAGTTTGATATAG
TTGGTCAACCAATTGGTGTTTTGTCGTGGACGATTGCACCTGATCAAAAT
GTCATTCAAGAACATGGAATCCCTAAACATTATGATACGATTGAAGAGTT
GATACAAGcttttaaagaaggaaaaatacacGgAATCGCTCTTGATAAAT
GGATGTCCGAATATTTCTTACCAGAAATCAAGAAAGCAAACCCAAAAGCT
AAAATCCACAAGCACTCAGCACCGTTGGATTCTGGGATAGGTTTCATTAC
TCACgatgaaaatatattcaaaatgaagaagtTTTTTCATCAGCAAAATG
TGGATAATATGATCAAGTTGTGGTATGATATCGCATTGCAATTCAATATA
GGTAAATCGAACACGACGACTATGACGAGCTGGGAAGCAGAACAACTCAA
TGCAGCAGTTAAAGATGAGGAAATTGACGTCTTATTCACAACAGAACATA
TATCGTTCCCAGCATGTCTAATTTCGATGACAATTCTAACCTTTGGATGT
ATTGCTACCAACCTTTATCTTATCAAAAGACAAGACAAAACTCGAAACAG
AGCGCAGAACTCATCTGGAGAAGGAGAACCGGCACAgaacgaaacatcaa
attcaaattGGCAAAGTATATGTCGAGGACAAATCAGTGATGTAATGAAA
GTAATAAAATGCAAAAACGAATGATAAATGGAAACATAAATTCTTGTTAA
ATAGAAAACCTacaatttttcggaaaaatttacaaatgttTAATGTACTA
TGTGATAGTAGTTGGCATGACAAAGTTATACCTTGCTAATCTATATTTAA
AATGACAGTCATTCTCGGCTGCGCGCATGACTTGATCGATGGCTTCAAAT
CAAACTTTAAACGACATGGACCCCATGGACCAATCTCTTCTGATTTTATT
TACAGTAATGTTCTAatgttaaaatcttttgttttctttgctgATTATAT
ATTTACTATTTTGAGAAATCATTCTAGATTTTAT
Run BLAST on NCBI

transcript from alignment at scaffold_110:195372..201405-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046456 ID=TCONS_00046456|Name=TCONS_00046456|organism=Clytia hemisphaerica|type=transcript|length=6034bp|location=Sequence derived from alignment at scaffold_110:195372..201405- (Clytia hemisphaerica)
GATATGGCGACACCATACCATCCCATTGGACGGCAAAAATATTTTCAGCT
ATTTGGATCTTCTTTGGCGTCACATTCTTTGGGATGTATTTGGGCACAAT
CACATCTGTCATGACCACAAACCTAAAAATCGAAAGCAAGTTTGATATAG
TTGGTCAACCAGTAAGTATTCTCCTAAATCCTAAGAAAAGTTCATAGCAC
TTTAATAGTGCTCAAAATCCAAGTCCAATAGCAAATGTGAATATAACCAA
ATACAAATTAAAAGCAAATACGCTTGAGAGAACAATCTGAACAATTAATT
ATAAGGATATGTTTTCTATATAAAGAACAAGTGTGGTCTATATGAATATC
TGCTTATTAGAAACATGTACTTGTGTTATAATAGATTGGTGTTTTGTCGT
GGACGATTGCACCTGATCAAAATGTCATTCAAGAACATGGAATCCCTAAA
CGTACGTTTTTTAAGAACTCTATAAGTATTATAGATGTTCGCTTAACAGA
CTGTTGTACAGAAACATATTCAACATCTACAATAGTCTAAAATGCAAAAA
TTTCCAAACATTCCCAAATAGTATGCTTTAAAATTAAAATCTCGTATTCA
AAGCGTTGGCTCAATTTGGAGCAGGGTAAATTCAAACCCAACCCAAAGAA
ATTTAACAATTTCAAAGCAATCATTTTCTGACTTTTTAATACTTAGATTA
TGATACGATTGAAGAGTTGATACAAGCTTTTAAAGAAGGAAAAATACACG
GTAAGCGATTTTTTTTAACTTGATTTTTGCGCTTGGGTACCGGGTAGCGA
AAGAATAGTGGTAATCGTTCAAAGTTTTAGAAAAATCTCTATAGGCGTCC
CAAAAACATTAAACAATTTTCAGTTTTATTTCTTAAACGCTAAAAAATCG
GTTAGTGTAAAACACAGGTCACAGGTCACAGGTCACGGGTCACAGGTCAC
AGGTCAGTGTCGACAGGTCAGCTTCAATTACTGTAAAACCCAAAGAAAAT
GTTTGAAAAACAGTTGTTAATGTCAAAAATAGAATTCCAAAGGTATTCTA
TTGATCTAGAACTATTTTAAAGCTAAAAATCTACCCAAGTGCTAACCACG
TGATTTCGCGTTTTATGCCGTGTATAACACAGACCTGTAATACTTGTATT
ATATATTACATCTATATCACACATGTAAAAAAATTATCTTTTCAATGTTA
TACGCATGTTACGTATGTTATANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGCCCCCTAACAGGAAAATAGCTATTTCACAAT
CACTATGTCATATCTCATTTTATCTCCTGCATCACCTTGGGTATGATAAC
AAGAATTGATGAAAATAGCGTTAATGAGATTTTATTTTATAAATGTTTCA
ATATTTTTATCCCTTTGTATTTTTGATAAAATGACGTCACAATTTTCATC
TCTCTAAAACAGCTCTCTCGGAGTATTTATTGTTTTCAAAACCTGTCAAT
CTATATCCATTTGCAGCGTCAGCATCCTATTATGCATGAAAAATATTTTG
ATGTTAATTGGTGTACAAAACCTCATACTTTGAGATAACATCATTATTTA
CATAATTTAAGTGTCATTTGTTGTCAATATTTAGGGTTGATGATTTGTCA
TTTTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAGCTTATGCTATG
AGTTTTATGTTACGAGTGCGTTACAGTTTTCCGGTCTGTAATTTGTATGA
CCTGTGACCTGTGACCCGTGACCTGTGACCCGTGACCTGTGTTTTACACT
AACCGCTAAAAAATCTATGCACATGATAACAAGCAAAAATATTTTTTGGG
GAAAACATAAATTTTCTCTCCAAGCCACCGAATCATGATTCAAACAAATA
AACAACACCAAAATTTTGATTTTATTAAACAAAGCTTTTCGAGTCTTTAC
TAACTCATATCAGGTTAAAATGAAATTTCTAGGTTGAAAGGTGTATCTAC
ATAACATACAAGAATTGATTCTAGAATGATATGATCTAGATGGAAATTTG
TGGTATTACTGCCAGTGGGTTCTAAGATCAATTTTTGCATTTTAGGAATC
GCTCTTGATAAATGGATGTCCGAATATTTCTTACCAGAAATCAAGAAAGC
AAACCCAAAAGCTAAAATCCACAAGCACTCAGCACCGTTGGATTCTGGGA
TAGGTTTCATTACTCACGATGAAAATATATTCAAAATGAAGAAGTTTTTT
CATCAGCAAAATGTGGATAATATGATCAAGTTGTGGTATGATATCGCATT
GCAATTCAATATAGTAAGGAACCAATGAGCCCTAACGTTTATAGGAGACA
GTATATAATCATTCACTCAGTGTCTCTGTACTCCAGTCTCACTTCTACGA
GCAAAAATGTTTGGGATGGGGGTTTGTTCTGACATTCCCTCACATGATAG
AGTACACGATAAAGTCACGATCCAATAGACTAAAATTTCACCAACAAAGG
GAATATATTAGATCATAAATTGATCAAACAAAATCAGAACACCCTTGCCT
CTGTGACCCAGTGGGATCCACCCCACTGGCCACCCCAGTGAAATTTTTTA
CCAAAAATGGCTCATTTTTCAGCCCCACTGGACAAATCACTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGATAAAAAGTTTACACATACCCCACTCGAAATGCCCTTA
TTTTAACGTACCCCAGTAGAACTTTTCTTTCAAAAAATCACCCCACTAGA
ATTTTCTCCTTTCCCTTCTTTAAAGGTGAAATATCCAAAAAAGCCAGAAA
AATCTGCTCGCTTCGCTCGCTCGCCATCAAATGTTCCACATCAATATATT
AACTGTATTTAACCCGAATTCTATGGTCATTGTCACGGTCATTTTAAAAC
GTAGAACGTCATAAATGCCAAACGAGAGGTGTTGAAAATCAAAAGTTTCT
GTCAGCGCAAACCACAGTTGTACTTGTAACTTTCTTTCTTTAAAGCTAGG
TTATAGCCTGAAAGATTTTCGAGAGGCTTTCTCACTTGCGTAGATACTGA
AAGAAAGACCTGTTGACTAAACATTACTAGGTTCTAGCGTTCTTAAAATT
TGATATAACGTACTGCTCCTCTATAGCCCCCTTCCCCCAGACCTCATTAC
ATTTCCTGTTACAGTGTAAGAGTAGATCCACCTGATCAAGATGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCTAAACCAAAAGTTAGCCAACACCTTCTATCGTT
AAAACACGATAAAATTAAGCGGTCTACAGTCTAACACACAGGCTAACCAA
AATTTAGCTCATGCAAAAAGTTGTTTCTCACCCCAGTGAATGTCAAGGAA
ATTTTCGCCAACCCACTCAATATTTGAAAGAATATTTTTCACCCCAGTGA
ATTTCAGGTTTTTTGATTCTCACCCCACTGGGTAATCAACACCCACTGGG
GCACAGAGACAGGGGTGTATCAGAATCCATTCTTAGTTCTTCGAGCATCT
TAGGGGGGAGGGGGGCAAAGAGCCAATCTCAAAAGTGTGCGCGAGAAAGT
TTTTGAGATTTGCCCTTTTCACTTGTAGATAGAATCCTTGTCCACTACAA
GAAAAGGAGCAATCTTAAATTTTTAAACTTTAAAGTTAGCAAAGTATTTT
AAGACACAAATTTTGAGATTGGAATTTTTGCTTCGATGGCAGCGACATGA
TTTTGGTCAAGTTTACATTCTTGTCTGTAAAATTCCAACCAAACAGGTGG
CCCAACTAAAATTTTGTAAATCATCTTCAATTATATTTGTCAATCTTGAG
ATGCTTCCAAGATGCTTCCCATAGTAAAAAATAGGAAGATGCTCGAAGGG
TTAAACCATCATTGAATTCATCACTCAGTTGTTAGCAATGACAGGTGTTC
TCGCTTACTGACTCTCTGACTCAATCTTTTCCTTGTTTTGACCAGGGTAA
ATCGAACACGACGACTATGACGAGCTGGGAAGCAGAACAACTCAATGCAG
CAGTTAAAGATGAGGAAATTGACGTCTTATTCACAACAGAACATATATCG
TTCCCAGCATGTCTAATTTCGATGACAATTCTAACCTTTGGATGTATTGC
TACCAACCTTTATCTTATCAAAAGACAAGACAAAACTCGAAACAGAGCGC
AGAACTCATCTGGAGAAGGAGAACCGGCACAGAACGAAACATCAAATTCA
AATTGGCAAAGTANTTGGAGAAGGAGAACCAGCACAGAACGAAACATCAA
ATTCAAATTGGCAAAGTATATGTCGAGGACAAATCAGTGATGTAATGAAA
GTAATAAAATGCAAAAACGAATGATAAATGGAAACATAAATTCTTGTTAA
ATAGAAAACCTACAATTTTTCGGAAAAATTTACAAATGTTTAATGTACTA
TGTGATAGTAGTTGGCATGACAAAGTTATACCTTGCTAATCTATATTTAA
AATGACAGTCATTCTCGGCTGCGCGCATGACTTGATCGATGGCTTCAAAT
CAAACTTTAAACGACATGGACCCCATGGACCAATCTCTTCTGATTTTATT
TACAGTAATGTTCTAATGTTAAAATCTTTTGTTTTCTTTGCTGATTATAT
ATTTACTATTTTGAGAAATCATTCTAGATTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029648XLOC_029648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046456-exon-scaffold_110-1575043694:201245..201405TCONS_00046456-exon-scaffold_110-1575043694:201245..201405Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1575043694:200955..201021TCONS_00046456-exon-scaffold_110-1575043694:200955..201021Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1575043694:200656..200709TCONS_00046456-exon-scaffold_110-1575043694:200656..200709Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1575043694:198393..198610TCONS_00046456-exon-scaffold_110-1575043694:198393..198610Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1575043694:195816..196060TCONS_00046456-exon-scaffold_110-1575043694:195816..196060Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1575043694:195372..195760TCONS_00046456-exon-scaffold_110-1575043694:195372..195760Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1510915933:201245..201405TCONS_00046456-exon-scaffold_110-1510915933:201245..201405Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1510915933:200955..201021TCONS_00046456-exon-scaffold_110-1510915933:200955..201021Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1510915933:200656..200709TCONS_00046456-exon-scaffold_110-1510915933:200656..200709Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1510915933:198393..198610TCONS_00046456-exon-scaffold_110-1510915933:198393..198610Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1510915933:195816..196060TCONS_00046456-exon-scaffold_110-1510915933:195816..196060Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1510915933:195372..195760TCONS_00046456-exon-scaffold_110-1510915933:195372..195760Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1491911889:201245..201405TCONS_00046456-exon-scaffold_110-1491911889:201245..201405Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1491911889:200955..201021TCONS_00046456-exon-scaffold_110-1491911889:200955..201021Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1491911889:200656..200709TCONS_00046456-exon-scaffold_110-1491911889:200656..200709Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1491911889:198393..198610TCONS_00046456-exon-scaffold_110-1491911889:198393..198610Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1491911889:195816..196060TCONS_00046456-exon-scaffold_110-1491911889:195816..196060Clytia hemisphaericaexon
TCONS_00046456-exon-scaffold_110-1491911889:195372..195760TCONS_00046456-exon-scaffold_110-1491911889:195372..195760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:195372..201405 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0569248	0.133496	0.0890021	0.0849725	3.47535	2.80882	1.09561	0.779924	0	0.436535	0	0.119484	0.137336	0.161563	0	0	0	0.097171	0.0407715	0.0708521	0	0	0.133677	0	38.8123	20.518	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046456 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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